Wall clock time and date at job start Tue Mar 31 2020 05:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47267 * 2 1 4 4 H 1.09000 * 109.38711 * 178.15988 * 3 2 1 5 5 C 1.50262 * 109.29960 * 58.41847 * 3 2 1 6 6 O 1.21277 * 118.62423 * 42.69477 * 5 3 2 7 7 N 1.33719 * 122.74800 * 222.71720 * 5 3 2 8 8 C 1.46500 * 118.53231 * 181.64113 * 7 5 3 9 9 C 1.53002 * 109.46922 * 89.99908 * 8 7 5 10 10 C 1.46005 * 122.92788 * 1.66700 * 7 5 3 11 11 C 1.52993 * 110.03960 * 341.84009 * 10 7 5 12 12 N 1.46906 * 109.38819 * 297.95538 * 3 2 1 13 13 C 1.46901 * 110.99434 * 293.71510 * 12 3 2 14 14 C 1.53008 * 109.46617 * 162.11735 * 13 12 3 15 15 H 1.08999 * 109.46992 * 328.97292 * 14 13 12 16 16 C 1.53003 * 109.46977 * 88.97567 * 14 13 12 17 17 C 1.53000 * 109.47100 * 208.97440 * 14 13 12 18 18 C 1.50690 * 109.47268 * 175.00306 * 17 14 13 19 19 H 1.07999 * 119.99860 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00287 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99933 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00080 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47198 * 269.99787 * 22 20 18 24 24 H 1.48497 * 109.46923 * 30.00295 * 22 20 18 25 25 H 1.48506 * 109.46733 * 150.00171 * 22 20 18 26 26 H 1.09001 * 109.47260 * 64.62256 * 1 2 3 27 27 H 1.09002 * 109.47388 * 184.62098 * 1 2 3 28 28 H 1.09003 * 109.47597 * 304.62770 * 1 2 3 29 29 H 1.09000 * 109.47267 * 240.00397 * 2 1 3 30 30 H 1.08998 * 109.46742 * 119.99981 * 2 1 3 31 31 H 1.09001 * 109.47264 * 209.99608 * 8 7 5 32 32 H 1.09001 * 109.47443 * 330.00065 * 8 7 5 33 33 H 1.09001 * 109.46933 * 59.99844 * 9 8 7 34 34 H 1.08998 * 109.47458 * 179.97438 * 9 8 7 35 35 H 1.09002 * 109.47389 * 300.00129 * 9 8 7 36 36 H 1.09000 * 109.37232 * 102.01668 * 10 7 5 37 37 H 1.08999 * 109.37132 * 221.66061 * 10 7 5 38 38 H 1.09002 * 109.60998 * 290.52590 * 11 10 7 39 39 H 1.09008 * 109.58368 * 170.07301 * 11 10 7 40 40 H 1.09001 * 109.47282 * 42.12420 * 13 12 3 41 41 H 1.08994 * 109.47338 * 282.11754 * 13 12 3 42 42 H 1.08994 * 109.47174 * 161.95697 * 16 14 13 43 43 H 1.08996 * 109.46774 * 281.96021 * 16 14 13 44 44 H 1.09001 * 109.46821 * 41.95935 * 16 14 13 45 45 H 1.09004 * 109.47358 * 55.00027 * 17 14 13 46 46 H 1.09002 * 109.46640 * 295.00455 * 17 14 13 47 47 H 0.96998 * 119.99732 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4411 0.0330 5 6 1.5053 2.1583 1.2081 6 8 1.5045 1.5790 2.2736 7 7 1.0300 3.4072 1.1575 8 6 0.5648 4.0297 2.3994 9 6 1.7292 4.7609 3.0706 10 6 0.9535 4.1777 -0.0803 11 6 1.8699 3.5613 -1.1390 12 7 1.5901 2.1189 -1.2240 13 6 2.2203 1.5295 -2.4130 14 6 1.4273 1.9261 -3.6599 15 1 0.3754 2.0436 -3.3994 16 6 1.9676 3.2481 -4.2088 17 6 1.5704 0.8357 -4.7236 18 6 0.6927 1.1661 -5.9031 19 1 0.0924 2.0639 -5.8947 20 6 0.6559 0.3224 -6.9929 21 7 1.3866 -0.7711 -7.0030 22 14 -0.4327 0.7318 -8.4547 23 1 -1.7753 0.1292 -8.2561 24 1 -0.5647 2.2059 -8.5762 25 1 0.1766 0.1855 -9.6940 26 1 -0.3634 0.4404 -0.9285 27 1 -0.3634 -1.0243 0.0828 28 1 -0.3634 0.5840 0.8456 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 -0.2294 4.7413 2.1738 32 1 0.1834 3.2604 3.0709 33 1 2.1105 5.5302 2.3991 34 1 1.3830 5.2245 3.9943 35 1 2.5235 4.0493 3.2962 36 1 -0.0737 4.1748 -0.4451 37 1 1.2637 5.2045 0.1132 38 1 2.9112 3.7157 -0.8562 39 1 1.6781 4.0285 -2.1051 40 1 2.2297 0.4436 -2.3186 41 1 3.2431 1.8955 -2.5012 42 1 1.6431 3.3723 -5.2419 43 1 1.5879 4.0737 -3.6069 44 1 3.0568 3.2401 -4.1686 45 1 1.2685 -0.1237 -4.3035 46 1 2.6094 0.7792 -5.0484 47 1 1.9516 -0.9837 -6.2437 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:57 Heat of formation + Delta-G solvation = -43.827250 kcal Electronic energy + Delta-G solvation = -23839.969531 eV Core-core repulsion = 20636.234924 eV Total energy + Delta-G solvation = -3203.734607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86394 -37.92931 -36.32068 -35.05375 -32.94093 -32.26845 -30.82007 -29.05617 -27.20030 -26.59554 -25.01683 -23.93155 -22.75799 -22.22124 -21.09582 -19.41294 -18.40919 -17.26739 -16.89678 -16.49274 -15.77695 -15.22772 -14.90673 -14.57162 -14.25832 -13.92014 -13.75436 -13.55063 -13.28786 -13.14200 -12.71568 -12.57184 -12.39602 -12.25537 -12.06858 -11.85741 -11.71366 -11.47110 -11.21522 -11.14709 -11.00928 -10.88385 -10.67712 -10.58951 -10.14734 -10.09386 -9.87319 -9.77190 -9.35294 -8.83061 -8.52894 -8.30958 -8.27638 -6.32478 -4.00888 2.59229 2.86382 3.44773 3.47747 3.63177 3.80189 4.38502 4.56531 4.66679 4.80924 4.91089 4.97684 5.07222 5.13043 5.16107 5.20205 5.40728 5.43433 5.49728 5.50132 5.57884 5.65743 5.70860 5.73657 5.77043 5.91657 5.93684 5.97109 6.08050 6.19017 6.27057 6.30841 6.32945 6.41282 6.57637 6.73723 6.97990 7.00396 7.02608 7.16587 7.33539 7.42389 7.61520 8.11801 8.25743 8.50241 8.92443 9.70468 11.07961 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.003927 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.362726 B = 7129.176779 C = 7601.856091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C 0.067 3.933 4 H 0.068 0.932 5 C 0.532 3.468 6 O -0.550 6.550 7 N -0.603 5.603 8 C 0.104 3.896 9 C -0.165 4.165 10 C 0.119 3.881 11 C 0.020 3.980 12 N -0.519 5.519 13 C 0.053 3.947 14 C -0.073 4.073 15 H 0.072 0.928 16 C -0.142 4.142 17 C 0.016 3.984 18 C -0.594 4.594 19 H 0.050 0.950 20 C 0.013 3.987 21 N -0.916 5.916 22 Si 1.069 2.931 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.286 1.286 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.114 0.886 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.007 0.993 46 H 0.004 0.996 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.742 10.923 16.293 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.141 4.141 3 C -0.044 4.044 4 H 0.086 0.914 5 C 0.321 3.679 6 O -0.428 6.428 7 N -0.337 5.337 8 C -0.018 4.018 9 C -0.223 4.223 10 C -0.004 4.004 11 C -0.108 4.108 12 N -0.245 5.245 13 C -0.073 4.073 14 C -0.092 4.092 15 H 0.090 0.910 16 C -0.199 4.199 17 C -0.021 4.021 18 C -0.632 4.632 19 H 0.068 0.932 20 C -0.190 4.190 21 N -0.552 5.552 22 Si 0.898 3.102 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.211 1.211 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.132 0.868 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.025 0.975 46 H 0.022 0.978 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.237 10.023 15.306 18.297 hybrid contribution 1.441 0.797 1.535 2.252 sum 1.204 10.819 16.841 20.053 Atomic orbital electron populations 1.21637 0.94702 1.01046 1.02482 1.21447 0.97680 0.92426 1.02579 1.21813 0.98330 0.95955 0.88307 0.91416 1.20052 0.76881 0.80820 0.90186 1.90672 1.56447 1.65254 1.30397 1.47520 1.62816 1.14365 1.08956 1.21441 0.96507 0.97580 0.86313 1.22097 0.99292 1.00446 1.00509 1.21563 1.01165 0.94503 0.83177 1.22886 0.97083 0.89941 1.00873 1.62662 1.58361 1.01898 1.01576 1.22612 0.95529 0.99821 0.89372 1.21088 0.99070 0.96371 0.92705 0.90958 1.22057 0.99227 0.96339 1.02273 1.19259 0.96468 0.92985 0.93403 1.22039 1.27963 1.10293 1.02910 0.93177 1.25797 0.98422 0.93741 1.01072 1.70751 1.26001 1.24782 1.33707 0.83546 0.75720 0.75217 0.75763 1.21534 1.21547 1.21139 0.91190 0.93172 0.93487 0.90571 0.90900 0.90633 0.89666 0.92708 0.91638 0.92374 0.90726 0.90686 0.94336 0.86802 0.90382 0.94983 0.90984 0.94314 0.94316 0.97521 0.97764 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.52 37.16 0.35 -1.70 16 2 C -0.10 -1.45 5.29 -26.73 -0.14 -1.59 16 3 C 0.07 0.94 2.20 -69.07 -0.15 0.78 16 4 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 5 C 0.53 7.65 5.81 -11.67 -0.07 7.58 16 6 O -0.55 -9.27 15.31 5.56 0.09 -9.19 16 7 N -0.60 -7.15 2.83 -174.58 -0.49 -7.64 16 8 C 0.10 1.03 6.01 -4.04 -0.02 1.01 16 9 C -0.17 -1.43 10.23 37.16 0.38 -1.05 16 10 C 0.12 1.20 6.57 -4.31 -0.03 1.17 16 11 C 0.02 0.23 5.36 -3.68 -0.02 0.21 16 12 N -0.52 -7.26 3.75 -228.05 -0.86 -8.11 16 13 C 0.05 0.85 4.66 -3.82 -0.02 0.83 16 14 C -0.07 -1.40 2.31 -90.61 -0.21 -1.61 16 15 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 16 C -0.14 -2.45 8.58 37.16 0.32 -2.13 16 17 C 0.02 0.40 3.65 -27.89 -0.10 0.29 16 18 C -0.59 -16.26 8.15 -34.45 -0.28 -16.55 16 19 H 0.05 1.35 7.22 -52.49 -0.38 0.97 16 20 C 0.01 0.37 5.46 -17.82 -0.10 0.28 16 21 N -0.92 -27.78 13.65 55.43 0.76 -27.02 16 22 Si 1.07 25.09 29.90 -169.99 -5.08 20.01 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.07 1.10 7.80 -51.93 -0.41 0.70 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.71 6.81 -51.93 -0.35 0.35 16 29 H 0.08 1.07 6.19 -51.93 -0.32 0.75 16 30 H 0.07 1.01 7.87 -51.93 -0.41 0.60 16 31 H 0.08 0.58 8.03 -51.93 -0.42 0.17 16 32 H 0.08 0.97 7.21 -51.93 -0.37 0.60 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 39 H 0.11 1.33 4.25 -51.92 -0.22 1.11 16 40 H 0.08 1.31 5.50 -51.93 -0.29 1.02 16 41 H 0.03 0.49 7.41 -51.93 -0.38 0.11 16 42 H 0.07 1.43 6.64 -51.93 -0.34 1.08 16 43 H 0.04 0.55 5.53 -51.93 -0.29 0.26 16 44 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 45 H 0.01 0.17 7.87 -51.93 -0.41 -0.24 16 46 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 47 H 0.27 8.10 7.22 -40.82 -0.29 7.80 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -31.19 354.84 -8.62 -39.81 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.29 Total: -0.73 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.09 Total: -12.47 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: -0.59 Total: -42.78 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -5.08 Total: 20.01 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.19 -8.62 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.016 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds