Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46694 * 2 1 4 4 H 1.09004 * 109.29993 * 59.46303 * 3 2 1 5 5 C 1.50254 * 109.38393 * 179.20016 * 3 2 1 6 6 O 1.21286 * 118.62575 * 317.35996 * 5 3 2 7 7 N 1.33712 * 122.75171 * 137.35616 * 5 3 2 8 8 C 1.46499 * 118.54072 * 178.28895 * 7 5 3 9 9 C 1.52993 * 109.47590 * 270.02308 * 8 7 5 10 10 C 1.46016 * 122.92825 * 358.31782 * 7 5 3 11 11 C 1.52988 * 110.03738 * 18.15566 * 10 7 5 12 12 N 1.46891 * 109.38949 * 299.71986 * 3 2 1 13 13 C 1.46907 * 111.00137 * 312.91660 * 12 3 2 14 14 C 1.53001 * 109.47432 * 170.68556 * 13 12 3 15 15 H 1.08994 * 109.46824 * 321.08184 * 14 13 12 16 16 C 1.52995 * 109.47039 * 81.08131 * 14 13 12 17 17 C 1.52997 * 109.46957 * 201.08278 * 14 13 12 18 18 C 1.50705 * 109.47002 * 174.99880 * 17 14 13 19 19 H 1.08001 * 119.99655 * 359.97438 * 18 17 14 20 20 C 1.37872 * 119.99841 * 180.02562 * 18 17 14 21 21 N 1.31519 * 120.00375 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46789 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46944 * 119.99957 * 22 20 18 25 25 H 1.48498 * 109.46856 * 240.00014 * 22 20 18 26 26 H 1.09001 * 109.47028 * 299.99813 * 1 2 3 27 27 H 1.08997 * 109.47440 * 59.99984 * 1 2 3 28 28 H 1.09000 * 109.46687 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47479 * 240.00413 * 2 1 3 30 30 H 1.08999 * 109.46897 * 119.99494 * 2 1 3 31 31 H 1.09001 * 109.46745 * 30.02666 * 8 7 5 32 32 H 1.09001 * 109.47545 * 150.02076 * 8 7 5 33 33 H 1.09000 * 109.46731 * 59.99888 * 9 8 7 34 34 H 1.09001 * 109.47227 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.47369 * 299.99976 * 9 8 7 36 36 H 1.09004 * 109.37462 * 257.98831 * 10 7 5 37 37 H 1.08998 * 109.38110 * 138.33369 * 10 7 5 38 38 H 1.09000 * 109.58813 * 189.93621 * 11 10 7 39 39 H 1.09002 * 109.71502 * 69.56392 * 11 10 7 40 40 H 1.08996 * 109.47238 * 50.67868 * 13 12 3 41 41 H 1.09001 * 109.46698 * 290.68766 * 13 12 3 42 42 H 1.08997 * 109.47617 * 35.87087 * 16 14 13 43 43 H 1.09002 * 109.47366 * 155.86726 * 16 14 13 44 44 H 1.09004 * 109.47246 * 275.86827 * 16 14 13 45 45 H 1.08999 * 109.47346 * 294.99636 * 17 14 13 46 46 H 1.09003 * 109.47341 * 54.99925 * 17 14 13 47 47 H 0.96992 * 120.00106 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6672 1.9565 0.8861 5 6 3.5423 1.4405 0.0198 6 8 4.1127 0.6598 0.7521 7 7 4.2769 2.2631 -0.7363 8 6 5.7359 2.2086 -0.6159 9 6 6.1954 3.1880 0.4660 10 6 3.6897 3.2138 -1.6762 11 6 2.2144 3.4399 -1.3400 12 7 1.5548 2.1313 -1.2033 13 6 1.7648 1.3081 -2.4018 14 6 1.0456 1.9467 -3.5917 15 1 0.0891 2.3528 -3.2627 16 6 1.9081 3.0732 -4.1643 17 6 0.8065 0.8887 -4.6707 18 6 -0.0089 1.4864 -5.7884 19 1 -0.3252 2.5176 -5.7342 20 6 -0.3519 0.7164 -6.8794 21 7 0.0329 -0.5395 -6.9451 22 14 -1.3619 1.4575 -8.2652 23 1 -1.6650 2.8771 -7.9522 24 1 -0.5926 1.3828 -9.5331 25 1 -2.6316 0.7014 -8.4112 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 6.0405 1.1979 -0.3442 32 1 6.1896 2.4809 -1.5688 33 1 5.7418 2.9156 1.4190 34 1 7.2809 3.1470 0.5559 35 1 5.8908 4.1987 0.1943 36 1 3.7735 2.8196 -2.6890 37 1 4.2243 4.1615 -1.6134 38 1 1.7398 4.0067 -2.1411 39 1 2.1310 3.9910 -0.4033 40 1 1.3663 0.3082 -2.2303 41 1 2.8318 1.2422 -2.6149 42 1 2.9601 2.7965 -4.0949 43 1 1.6440 3.2380 -5.2089 44 1 1.7348 3.9877 -3.5970 45 1 1.7642 0.5464 -5.0626 46 1 0.2680 0.0449 -4.2392 47 1 -0.2080 -1.0810 -7.7129 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602626694.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = -27.980451 kcal Electronic energy + Delta-G solvation = -24204.532616 eV Core-core repulsion = 21001.485177 eV Total energy + Delta-G solvation = -3203.047438 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14335 -37.95939 -36.18383 -34.83912 -32.98705 -32.04385 -30.52462 -29.13172 -27.46368 -26.72491 -25.11265 -23.79194 -23.10654 -22.12479 -20.81330 -19.52957 -17.96662 -17.03109 -16.78387 -16.35469 -15.91055 -15.41661 -15.11528 -14.39654 -14.36357 -13.93622 -13.85516 -13.45707 -12.98176 -12.78760 -12.57903 -12.35706 -12.28367 -12.17946 -12.03408 -12.02547 -11.63433 -11.45038 -11.19912 -11.11958 -10.95943 -10.86620 -10.73320 -10.49032 -10.15954 -10.09170 -10.00807 -9.69992 -9.16042 -9.00132 -8.75047 -8.34919 -8.07023 -5.99419 -4.00794 2.62212 2.87121 3.30628 3.38742 3.41853 4.00046 4.41798 4.46529 4.79999 4.88024 4.92713 4.97376 5.08251 5.22348 5.23322 5.27362 5.36528 5.41209 5.55219 5.58539 5.64991 5.70481 5.75797 5.78291 5.86976 5.96010 6.00329 6.09570 6.14000 6.20467 6.30139 6.34870 6.39422 6.48372 6.60411 6.85427 7.04598 7.09719 7.14146 7.28552 7.39724 7.68527 7.83756 8.00474 8.14564 8.43500 9.05915 9.62907 11.11969 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022116 B = 0.004481 C = 0.004085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.743595 B = 6247.223385 C = 6852.100785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C 0.072 3.928 4 H 0.109 0.891 5 C 0.490 3.510 6 O -0.552 6.552 7 N -0.604 5.604 8 C 0.103 3.897 9 C -0.163 4.163 10 C 0.065 3.935 11 C 0.025 3.975 12 N -0.513 5.513 13 C 0.041 3.959 14 C -0.080 4.080 15 H 0.070 0.930 16 C -0.150 4.150 17 C 0.029 3.971 18 C -0.512 4.512 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.285 1.285 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.042 0.958 45 H 0.013 0.987 46 H 0.016 0.984 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.656 8.046 13.422 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.039 4.039 4 H 0.127 0.873 5 C 0.277 3.723 6 O -0.429 6.429 7 N -0.337 5.337 8 C -0.020 4.020 9 C -0.221 4.221 10 C -0.059 4.059 11 C -0.103 4.103 12 N -0.237 5.237 13 C -0.085 4.085 14 C -0.099 4.099 15 H 0.088 0.912 16 C -0.206 4.206 17 C -0.008 4.008 18 C -0.551 4.551 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.716 3.284 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.069 0.931 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.031 0.969 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.411 7.557 13.745 17.348 hybrid contribution 0.503 0.307 -0.990 1.152 sum 7.914 7.864 12.755 16.946 Atomic orbital electron populations 1.21694 0.94060 1.01471 1.02947 1.21558 0.97277 0.92856 1.03171 1.21993 0.87650 0.98128 0.96151 0.87295 1.21406 0.91840 0.79606 0.79498 1.90655 1.72854 1.39049 1.40391 1.47568 1.06828 1.38247 1.41073 1.21441 0.80047 1.01353 0.99139 1.22073 1.01209 0.99288 0.99557 1.22473 0.96316 0.93038 0.94076 1.22938 0.90422 0.93104 1.03828 1.62767 1.55153 1.03202 1.02552 1.22763 0.98787 0.97704 0.89265 1.21204 0.97748 0.97194 0.93749 0.91171 1.22296 0.98350 0.97385 1.02605 1.19120 0.96639 0.93052 0.91992 1.21251 1.32888 0.97463 1.03481 0.92483 1.25013 0.96222 0.94850 0.98378 1.69974 1.46403 1.06924 1.30213 0.86598 0.80103 0.79357 0.82315 1.19748 1.21169 1.21095 0.93068 0.90719 0.92927 0.91110 0.90739 0.89742 0.90713 0.92398 0.91700 0.92716 0.89650 0.90718 0.86548 0.90699 0.89767 0.94867 0.94130 0.91023 0.93934 0.96891 0.96604 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.51 37.16 0.35 -1.50 16 2 C -0.11 -1.52 4.62 -26.73 -0.12 -1.64 16 3 C 0.07 0.98 2.46 -69.08 -0.17 0.81 16 4 H 0.11 1.35 8.14 -51.93 -0.42 0.92 16 5 C 0.49 7.27 6.60 -11.68 -0.08 7.19 16 6 O -0.55 -9.72 15.53 5.55 0.09 -9.64 16 7 N -0.60 -7.73 2.66 -174.58 -0.47 -8.19 16 8 C 0.10 1.16 6.01 -4.05 -0.02 1.14 16 9 C -0.16 -1.56 10.23 37.15 0.38 -1.18 16 10 C 0.06 0.73 5.36 -4.31 -0.02 0.70 16 11 C 0.03 0.29 5.40 -3.67 -0.02 0.27 16 12 N -0.51 -7.02 4.24 -228.06 -0.97 -7.99 16 13 C 0.04 0.67 3.45 -3.82 -0.01 0.66 16 14 C -0.08 -1.50 2.23 -90.62 -0.20 -1.70 16 15 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 16 C -0.15 -2.47 7.83 37.15 0.29 -2.18 16 17 C 0.03 0.72 4.39 -27.88 -0.12 0.60 16 18 C -0.51 -13.77 8.07 -34.44 -0.28 -14.05 16 19 H 0.06 1.49 7.32 -52.49 -0.38 1.11 16 20 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 21 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 22 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.09 6.93 -51.93 -0.36 0.73 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.08 6.10 -51.93 -0.32 0.76 16 30 H 0.07 1.02 7.80 -51.93 -0.40 0.61 16 31 H 0.08 1.09 7.21 -51.93 -0.37 0.72 16 32 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.07 4.03 -51.93 -0.21 0.86 16 37 H 0.07 0.68 8.12 -51.93 -0.42 0.25 16 38 H 0.12 1.33 4.64 -51.93 -0.24 1.09 16 39 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.08 1.48 4.79 -51.93 -0.25 1.23 16 41 H 0.03 0.56 5.35 -51.93 -0.28 0.28 16 42 H 0.04 0.62 5.41 -51.93 -0.28 0.34 16 43 H 0.07 1.37 6.64 -51.93 -0.34 1.02 16 44 H 0.04 0.58 5.36 -51.93 -0.28 0.30 16 45 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.41 8.03 -51.93 -0.42 0.00 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 345.44 15.07 5.21 5.21 Total: -1.00 -30.41 345.44 -8.46 -38.87 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -7.91 Total: 0.67 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.13 Total: -9.41 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.70 Total: -41.87 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.41 -8.46 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602626694.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.890 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds