Wall clock time and date at job start Tue Mar 31 2020 06:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47197 * 2 1 4 4 N 1.46498 * 109.46959 * 179.97438 * 3 2 1 5 5 C 1.47246 * 120.07836 * 269.97516 * 4 3 2 6 6 C 1.53112 * 108.40633 * 250.01575 * 5 4 3 7 7 C 1.51688 * 110.75406 * 274.41142 * 6 5 4 8 8 N 1.45752 * 113.93727 * 66.76525 * 7 6 5 9 9 C 1.46902 * 111.00126 * 167.26176 * 8 7 6 10 10 C 1.52993 * 109.47228 * 289.59054 * 9 8 7 11 11 H 1.09006 * 109.47563 * 57.19243 * 10 9 8 12 12 C 1.53003 * 109.47340 * 297.19029 * 10 9 8 13 13 C 1.53002 * 109.47299 * 177.18991 * 10 9 8 14 14 C 1.50702 * 109.47360 * 185.00078 * 13 10 9 15 15 H 1.07993 * 119.99913 * 359.97438 * 14 13 10 16 16 C 1.37876 * 119.99823 * 180.27737 * 14 13 10 17 17 N 1.31516 * 120.00401 * 359.72355 * 16 14 13 18 18 Si 1.86796 * 119.99871 * 179.72182 * 16 14 13 19 19 H 1.48499 * 109.47409 * 59.99897 * 18 16 14 20 20 H 1.48505 * 109.47211 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47289 * 299.99692 * 18 16 14 22 22 C 1.46877 * 112.44068 * 292.28576 * 8 7 6 23 23 C 1.33611 * 120.07869 * 89.99775 * 4 3 2 24 24 O 1.21285 * 119.88279 * 0.51699 * 23 4 3 25 25 H 1.09003 * 109.46856 * 59.99803 * 1 2 3 26 26 H 1.08992 * 109.47280 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46857 * 299.99987 * 1 2 3 28 28 H 1.08995 * 109.47192 * 239.99449 * 2 1 3 29 29 H 1.09003 * 109.46856 * 120.00197 * 2 1 3 30 30 H 1.08997 * 109.47639 * 60.00163 * 3 2 1 31 31 H 1.09000 * 109.47006 * 299.99504 * 3 2 1 32 32 H 1.09005 * 109.67543 * 9.74419 * 5 4 3 33 33 H 1.09010 * 109.67849 * 130.24870 * 5 4 3 34 34 H 1.09000 * 109.21706 * 34.73512 * 6 5 4 35 35 H 1.08997 * 109.21778 * 154.12650 * 6 5 4 36 36 H 1.09004 * 108.58863 * 305.61405 * 7 6 5 37 37 H 1.08997 * 108.58706 * 187.91925 * 7 6 5 38 38 H 1.08996 * 109.47235 * 169.58498 * 9 8 7 39 39 H 1.09002 * 109.46703 * 49.58871 * 9 8 7 40 40 H 1.08997 * 109.46650 * 54.69813 * 12 10 9 41 41 H 1.08997 * 109.47234 * 174.69908 * 12 10 9 42 42 H 1.09000 * 109.46999 * 294.69820 * 12 10 9 43 43 H 1.09000 * 109.46863 * 64.99491 * 13 10 9 44 44 H 1.08999 * 109.46895 * 305.00095 * 13 10 9 45 45 H 0.96995 * 120.00716 * 179.97438 * 17 16 14 46 46 H 1.09008 * 109.60041 * 205.54266 * 22 8 7 47 47 H 1.09000 * 109.59643 * 325.85291 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2424 1.4431 1.2751 6 6 4.9144 2.8085 1.4441 7 6 6.2590 2.8364 0.7426 8 7 6.1706 2.7435 -0.7093 9 6 7.4562 3.0761 -1.3374 10 6 7.7285 4.5734 -1.1800 11 1 7.7160 4.8358 -0.1221 12 6 6.6477 5.3685 -1.9153 13 6 9.0991 4.9076 -1.7721 14 6 9.4208 6.3560 -1.5083 15 1 8.7177 6.9763 -0.9724 16 6 10.6098 6.8909 -1.9567 17 7 11.4658 6.1357 -2.6099 18 14 11.0050 8.6882 -1.6365 19 1 11.0294 8.9366 -0.1726 20 1 12.3333 9.0138 -2.2154 21 1 9.9670 9.5432 -2.2665 22 6 5.6890 1.4308 -1.1588 23 6 4.1751 1.4422 -1.1553 24 8 3.5685 1.4515 -2.2055 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6768 1.9563 -0.8900 32 1 3.5507 1.2699 2.0995 33 1 5.0003 0.6597 1.2612 34 1 4.2719 3.5796 1.0191 35 1 5.0600 3.0077 2.5058 36 1 6.8590 2.0030 1.1082 37 1 6.7666 3.7657 1.0011 38 1 7.4192 2.8230 -2.3969 39 1 8.2531 2.5093 -0.8560 40 1 5.6647 5.0613 -1.5584 41 1 6.7870 6.4327 -1.7255 42 1 6.7215 5.1777 -2.9860 43 1 9.0838 4.7287 -2.8472 44 1 9.8582 4.2768 -1.3096 45 1 12.3021 6.5120 -2.9256 46 1 6.0510 1.2345 -2.1682 47 1 6.0530 0.6568 -0.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628685.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:55 Heat of formation + Delta-G solvation = -50.255511 kcal Electronic energy + Delta-G solvation = -23158.708515 eV Core-core repulsion = 19954.695157 eV Total energy + Delta-G solvation = -3204.013358 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44688 -37.82447 -36.36407 -34.89352 -33.48039 -32.00346 -31.44269 -28.50877 -26.93024 -26.28896 -25.64682 -24.20982 -22.50381 -22.02421 -20.86128 -19.13810 -18.73017 -17.25717 -16.82149 -16.26020 -15.52455 -15.07359 -15.03087 -14.77876 -14.41550 -14.01549 -13.85563 -13.54765 -13.41666 -13.17396 -12.66280 -12.50420 -12.34348 -12.22141 -12.14389 -11.66562 -11.54253 -11.31255 -11.29547 -11.18001 -10.95030 -10.90209 -10.83587 -10.72288 -10.37128 -10.27906 -9.79645 -9.59918 -9.11923 -8.96205 -8.77360 -8.31322 -8.09818 -5.96411 -3.97520 2.61739 2.92108 3.35154 3.39616 3.42102 4.05496 4.48090 4.49280 4.66475 4.68210 4.77420 4.85006 4.96167 5.00611 5.17105 5.24128 5.32622 5.38209 5.39454 5.43586 5.48622 5.57586 5.62434 5.70214 5.75280 5.88187 5.90622 5.97025 5.98897 6.14270 6.16380 6.39326 6.42832 6.53709 6.71293 6.98991 7.14760 7.18578 7.27830 7.34336 7.38944 7.69677 7.86263 8.03617 8.23304 8.47621 9.08566 9.65765 11.15106 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036843 B = 0.003147 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.808156 B = 8895.280900 C = 8998.339273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.114 3.886 4 N -0.610 5.610 5 C 0.111 3.889 6 C -0.138 4.138 7 C 0.053 3.947 8 N -0.533 5.533 9 C 0.066 3.934 10 C -0.079 4.079 11 H 0.055 0.945 12 C -0.122 4.122 13 C 0.027 3.973 14 C -0.512 4.512 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.890 3.110 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.041 3.959 23 C 0.531 3.469 24 O -0.545 6.545 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.029 0.971 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.017 0.983 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.102 0.898 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.267 -12.865 10.197 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.009 4.009 4 N -0.343 5.343 5 C -0.012 4.012 6 C -0.177 4.177 7 C -0.075 4.075 8 N -0.259 5.259 9 C -0.061 4.061 10 C -0.098 4.098 11 H 0.074 0.926 12 C -0.179 4.179 13 C -0.010 4.010 14 C -0.550 4.550 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.718 3.282 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.090 4.090 23 C 0.319 3.681 24 O -0.421 6.421 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.121 0.879 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.744 -12.519 9.397 23.662 hybrid contribution 1.003 0.398 0.511 1.194 sum -16.741 -12.121 9.909 22.920 Atomic orbital electron populations 1.21688 0.95182 1.01826 1.01972 1.21884 0.96141 0.97367 1.02330 1.21513 0.79404 0.96768 1.03171 1.47944 1.06397 1.73474 1.06455 1.21877 0.96087 0.97845 0.85420 1.21866 0.97477 0.97570 1.00749 1.21696 0.96353 1.02387 0.87035 1.60820 1.31262 1.26180 1.07624 1.22387 0.86457 0.98633 0.98587 1.21232 0.98155 0.90703 0.99679 0.92619 1.21566 0.97225 0.99794 0.99356 1.19131 0.89469 0.96368 0.96056 1.21181 1.02662 0.95700 1.35496 0.92662 1.25014 0.96495 0.97643 0.95378 1.69950 1.09604 1.35746 1.38389 0.86696 0.77433 0.85649 0.78434 1.20346 1.21389 1.20271 1.22431 0.91491 0.91965 1.03127 1.20575 0.90203 0.74428 0.82937 1.90682 1.70358 1.49677 1.31408 0.92404 0.92582 0.92687 0.91607 0.92118 0.90796 0.89830 0.89817 0.91018 0.90227 0.90141 0.95273 0.89452 0.90852 0.94816 0.93833 0.93076 0.94067 0.96509 0.96935 0.93046 0.87930 0.92385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.14 -1.17 6.26 -26.73 -0.17 -1.33 16 3 C 0.11 1.10 5.36 -4.04 -0.02 1.08 16 4 N -0.61 -6.70 2.48 -173.05 -0.43 -7.12 16 5 C 0.11 0.90 5.92 -3.58 -0.02 0.88 16 6 C -0.14 -1.30 5.86 -27.34 -0.16 -1.46 16 7 C 0.05 0.64 4.80 -5.11 -0.02 0.62 16 8 N -0.53 -7.70 3.60 -237.47 -0.86 -8.56 16 9 C 0.07 1.11 4.36 -3.83 -0.02 1.09 16 10 C -0.08 -1.59 2.31 -90.62 -0.21 -1.80 16 11 H 0.06 1.12 6.37 -51.93 -0.33 0.79 16 12 C -0.12 -2.44 8.85 37.16 0.33 -2.11 16 13 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 14 C -0.51 -14.28 8.47 -34.44 -0.29 -14.58 16 15 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C 0.04 0.54 5.29 -4.65 -0.02 0.51 16 23 C 0.53 7.58 7.19 -11.16 -0.08 7.50 16 24 O -0.55 -9.82 16.63 5.55 0.09 -9.73 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 31 H 0.08 0.98 7.40 -51.93 -0.38 0.60 16 32 H 0.08 0.49 7.92 -51.93 -0.41 0.08 16 33 H 0.07 0.55 6.77 -51.92 -0.35 0.20 16 34 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.03 0.32 7.79 -51.93 -0.40 -0.08 16 37 H 0.09 1.18 6.09 -51.93 -0.32 0.87 16 38 H 0.07 1.27 7.61 -51.93 -0.40 0.88 16 39 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 40 H 0.04 0.81 7.54 -51.93 -0.39 0.41 16 41 H 0.05 1.07 7.11 -51.93 -0.37 0.70 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.10 1.41 7.45 -51.92 -0.39 1.02 16 47 H 0.06 0.63 6.68 -51.93 -0.35 0.29 16 LS Contribution 362.87 15.07 5.47 5.47 Total: -1.00 -32.20 362.87 -9.20 -41.40 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -8.65 Total: -3.74 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -0.54 Total: -8.19 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.55 Total: -41.91 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.20 -9.20 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628685.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.855 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds