Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47361 * 2 1 4 4 N 1.46506 * 109.47362 * 179.97438 * 3 2 1 5 5 C 1.47244 * 120.07349 * 269.97544 * 4 3 2 6 6 C 1.53105 * 108.40208 * 250.01142 * 5 4 3 7 7 C 1.51685 * 110.76083 * 274.41383 * 6 5 4 8 8 N 1.45752 * 113.93270 * 66.76686 * 7 6 5 9 9 C 1.46906 * 110.99723 * 167.26764 * 8 7 6 10 10 C 1.53002 * 109.47053 * 191.86806 * 9 8 7 11 11 H 1.09002 * 109.47495 * 305.00162 * 10 9 8 12 12 C 1.53005 * 109.46814 * 65.00187 * 10 9 8 13 13 C 1.53000 * 109.47125 * 184.99886 * 10 9 8 14 14 C 1.50699 * 109.47133 * 175.00170 * 13 10 9 15 15 H 1.07994 * 120.00160 * 0.02562 * 14 13 10 16 16 C 1.37880 * 119.99778 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99924 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00221 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46816 * 90.00349 * 18 16 14 20 20 H 1.48499 * 109.47133 * 210.00729 * 18 16 14 21 21 H 1.48502 * 109.46942 * 330.00530 * 18 16 14 22 22 C 1.46883 * 112.44114 * 292.28553 * 8 7 6 23 23 C 1.33605 * 120.07361 * 89.99725 * 4 3 2 24 24 O 1.21280 * 119.88603 * 0.51781 * 23 4 3 25 25 H 1.09000 * 109.47486 * 300.00648 * 1 2 3 26 26 H 1.09008 * 109.46938 * 60.00417 * 1 2 3 27 27 H 1.09001 * 109.47027 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47486 * 239.99352 * 2 1 3 29 29 H 1.09008 * 109.46938 * 119.99583 * 2 1 3 30 30 H 1.09000 * 109.47350 * 59.99269 * 3 2 1 31 31 H 1.08998 * 109.46752 * 299.99593 * 3 2 1 32 32 H 1.08997 * 109.67942 * 9.74813 * 5 4 3 33 33 H 1.08999 * 109.67506 * 130.24946 * 5 4 3 34 34 H 1.09003 * 109.21779 * 34.74592 * 6 5 4 35 35 H 1.09003 * 109.21962 * 154.08651 * 6 5 4 36 36 H 1.08996 * 108.58777 * 305.61944 * 7 6 5 37 37 H 1.08998 * 108.59297 * 187.92269 * 7 6 5 38 38 H 1.08992 * 109.47459 * 311.86889 * 9 8 7 39 39 H 1.09004 * 109.47040 * 71.87040 * 9 8 7 40 40 H 1.08993 * 109.46967 * 299.99663 * 12 10 9 41 41 H 1.08997 * 109.46762 * 60.00378 * 12 10 9 42 42 H 1.09004 * 109.46776 * 179.97438 * 12 10 9 43 43 H 1.08994 * 109.47370 * 295.00462 * 13 10 9 44 44 H 1.09006 * 109.46810 * 55.00266 * 13 10 9 45 45 H 0.96997 * 120.00137 * 179.97438 * 17 16 14 46 46 H 1.08997 * 109.60039 * 205.54210 * 22 8 7 47 47 H 1.08993 * 109.60140 * 325.86231 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.2424 1.4432 1.2752 6 6 4.9142 2.8086 1.4441 7 6 6.2589 2.8366 0.7426 8 7 6.1704 2.7437 -0.7093 9 6 7.4561 3.0763 -1.3373 10 6 7.2561 3.2581 -2.8433 11 1 6.7879 2.3654 -3.2580 12 6 6.3568 4.4699 -3.0957 13 6 8.6128 3.4811 -3.5146 14 6 8.4303 3.5376 -5.0095 15 1 7.4452 3.4260 -5.4378 16 6 9.5210 3.7317 -5.8303 17 7 9.3617 3.7815 -7.1348 18 14 11.2248 3.9254 -5.0894 19 1 11.8664 2.5917 -4.9681 20 1 12.0502 4.7940 -5.9666 21 1 11.1122 4.5447 -3.7444 22 6 5.6890 1.4309 -1.1588 23 6 4.1750 1.4423 -1.1553 24 8 3.5684 1.4516 -2.2054 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9562 -0.8900 32 1 3.5506 1.2699 2.0995 33 1 5.0001 0.6599 1.2612 34 1 4.2717 3.5797 1.0191 35 1 5.0592 3.0083 2.5058 36 1 6.8589 2.0033 1.1082 37 1 6.7664 3.7659 1.0011 38 1 7.8419 4.0008 -0.9079 39 1 8.1668 2.2691 -1.1600 40 1 5.3904 4.3110 -2.6175 41 1 6.8251 5.3625 -2.6811 42 1 6.2147 4.5996 -4.1687 43 1 9.0411 4.4205 -3.1652 44 1 9.2830 2.6597 -3.2612 45 1 10.1289 3.9184 -7.7122 46 1 6.0509 1.2347 -2.1681 47 1 6.0528 0.6570 -0.4831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602628686.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -44.934827 kcal Electronic energy + Delta-G solvation = -23373.182107 eV Core-core repulsion = 20169.399471 eV Total energy + Delta-G solvation = -3203.782635 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.44530 -37.81011 -36.40622 -35.00968 -33.44330 -32.08409 -31.28467 -28.67086 -27.51118 -26.29800 -25.64144 -24.23475 -22.11526 -22.00929 -20.78536 -19.28648 -18.59400 -17.39289 -16.93477 -16.57754 -15.44602 -15.24138 -14.99161 -14.65833 -14.34658 -14.05106 -13.72934 -13.61167 -13.47496 -13.13161 -12.95050 -12.48270 -12.31016 -12.24256 -12.10809 -11.73059 -11.64081 -11.60509 -11.43802 -11.21775 -11.10645 -10.90712 -10.87479 -10.65247 -10.33750 -9.88396 -9.71367 -9.55445 -9.37883 -9.00287 -8.75722 -8.46770 -8.17005 -5.96435 -3.93202 2.67767 2.94521 3.33765 3.41258 3.44439 3.98871 4.48637 4.50660 4.60862 4.65045 4.80416 4.83597 4.96168 5.03421 5.15328 5.23032 5.25400 5.33189 5.37052 5.44373 5.47141 5.58146 5.60062 5.64993 5.70544 5.79566 5.83240 5.94192 6.02575 6.03242 6.05366 6.30421 6.42690 6.46639 6.64994 6.88232 7.01898 7.14890 7.19694 7.26274 7.38411 7.39492 7.53874 7.87747 8.30880 8.63948 9.10913 9.66020 11.17160 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026632 B = 0.003733 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.105149 B = 7498.330368 C = 8183.787223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.114 3.886 4 N -0.612 5.612 5 C 0.111 3.889 6 C -0.138 4.138 7 C 0.057 3.943 8 N -0.533 5.533 9 C 0.064 3.936 10 C -0.075 4.075 11 H 0.065 0.935 12 C -0.122 4.122 13 C -0.008 4.008 14 C -0.511 4.511 15 H 0.075 0.925 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.878 3.122 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.037 3.963 23 C 0.530 3.470 24 O -0.535 6.535 25 H 0.053 0.947 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.043 0.957 41 H 0.037 0.963 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.007 0.993 45 H 0.261 0.739 46 H 0.114 0.886 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 -5.731 22.800 26.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.008 4.008 4 N -0.346 5.346 5 C -0.012 4.012 6 C -0.177 4.177 7 C -0.071 4.071 8 N -0.259 5.259 9 C -0.062 4.062 10 C -0.094 4.094 11 H 0.083 0.917 12 C -0.179 4.179 13 C -0.046 4.046 14 C -0.549 4.549 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.093 4.093 23 C 0.317 3.683 24 O -0.410 6.410 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.034 0.966 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.132 0.868 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.628 -5.352 21.921 25.858 hybrid contribution 1.654 -0.494 0.660 1.848 sum -10.974 -5.846 22.581 25.778 Atomic orbital electron populations 1.21687 0.95194 1.01836 1.01939 1.21888 0.96134 0.97379 1.02369 1.21507 0.79411 0.96788 1.03104 1.47956 1.06361 1.73939 1.06340 1.21823 0.96131 0.97563 0.85653 1.21864 0.97390 0.97942 1.00488 1.21631 0.96480 1.01491 0.87496 1.60792 1.30931 1.27361 1.06842 1.22376 0.87064 0.99831 0.96966 1.21101 0.98409 0.99130 0.90735 0.91717 1.21553 0.98067 0.96510 1.01765 1.19614 0.92203 0.95939 0.96857 1.21145 0.95931 1.48781 0.89060 0.90729 1.25034 0.98918 0.94962 0.94704 1.69919 1.30680 1.50863 1.02979 0.86811 0.84871 0.78236 0.79518 1.20484 1.21527 1.19098 1.22514 0.91509 0.91199 1.04128 1.20547 0.90140 0.74640 0.82943 1.90715 1.70184 1.48865 1.31266 0.92760 0.92357 0.92578 0.91492 0.92189 0.90918 0.89767 0.89831 0.91070 0.90220 0.90263 0.95283 0.90567 0.90777 0.94929 0.93749 0.94409 0.92192 0.96629 0.97424 0.92876 0.86776 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.15 0.37 -0.73 16 2 C -0.14 -1.24 6.26 -26.73 -0.17 -1.41 16 3 C 0.11 1.14 5.36 -4.04 -0.02 1.12 16 4 N -0.61 -6.85 2.48 -173.06 -0.43 -7.28 16 5 C 0.11 0.87 5.92 -3.58 -0.02 0.85 16 6 C -0.14 -1.12 5.86 -27.34 -0.16 -1.28 16 7 C 0.06 0.58 4.93 -5.11 -0.03 0.56 16 8 N -0.53 -7.41 3.82 -237.46 -0.91 -8.31 16 9 C 0.06 1.02 4.32 -3.82 -0.02 1.00 16 10 C -0.08 -1.52 2.27 -90.62 -0.21 -1.72 16 11 H 0.06 1.39 6.13 -51.93 -0.32 1.07 16 12 C -0.12 -2.48 8.89 37.16 0.33 -2.15 16 13 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 14 C -0.51 -14.74 8.96 -34.44 -0.31 -15.05 16 15 H 0.07 2.34 7.30 -52.49 -0.38 1.96 16 16 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 17 N -0.90 -28.47 13.96 55.43 0.77 -27.70 16 18 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C 0.04 0.52 5.08 -4.64 -0.02 0.50 16 23 C 0.53 7.99 7.19 -11.16 -0.08 7.91 16 24 O -0.54 -10.37 16.63 5.56 0.09 -10.28 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 30 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 31 H 0.08 1.03 7.40 -51.93 -0.38 0.65 16 32 H 0.08 0.46 7.92 -51.93 -0.41 0.05 16 33 H 0.07 0.53 6.77 -51.93 -0.35 0.17 16 34 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.03 0.27 7.79 -51.93 -0.40 -0.13 16 37 H 0.08 0.76 7.76 -51.93 -0.40 0.35 16 38 H 0.07 1.13 7.80 -51.93 -0.41 0.72 16 39 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 40 H 0.04 0.86 7.75 -51.93 -0.40 0.46 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.37 6.95 -51.93 -0.36 1.01 16 43 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 44 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 45 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 46 H 0.11 1.87 5.77 -51.93 -0.30 1.57 16 47 H 0.06 0.66 6.68 -51.93 -0.35 0.31 16 LS Contribution 359.34 15.07 5.42 5.42 Total: -1.00 -33.57 359.34 -8.87 -42.44 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -8.62 Total: -2.71 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -0.53 Total: -8.89 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: -0.56 Total: -43.29 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.57 -8.87 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602628686.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.498 kcal (2) G-P(sol) polarization free energy of solvation -33.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds