Wall clock time and date at job start Tue Mar 31 2020 06:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46623 * 2 1 4 4 N 1.46500 * 109.46998 * 179.97438 * 3 2 1 5 5 C 1.46762 * 124.34857 * 89.99876 * 4 3 2 6 6 C 1.54487 * 105.47159 * 197.01676 * 5 4 3 7 7 H 1.09002 * 110.96819 * 216.46362 * 6 5 4 8 8 C 1.52998 * 110.96781 * 92.70410 * 6 5 4 9 9 N 1.46900 * 109.47163 * 174.99589 * 8 6 5 10 10 C 1.46907 * 110.99999 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.46598 * 180.02562 * 10 9 8 12 12 H 1.08989 * 109.47802 * 55.00441 * 11 10 9 13 13 C 1.53000 * 109.47311 * 294.99811 * 11 10 9 14 14 C 1.53004 * 109.46628 * 175.00178 * 11 10 9 15 15 C 1.50701 * 109.47230 * 184.99831 * 14 11 10 16 16 H 1.08004 * 119.99939 * 359.97438 * 15 14 11 17 17 C 1.37874 * 120.00485 * 179.97438 * 15 14 11 18 18 N 1.31517 * 120.00463 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99683 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47123 * 90.00005 * 19 17 15 21 21 H 1.48503 * 109.46651 * 209.99983 * 19 17 15 22 22 H 1.48504 * 109.47066 * 329.99585 * 19 17 15 23 23 C 1.54622 * 101.76661 * 334.58544 * 6 5 4 24 24 C 1.34424 * 124.34955 * 269.70785 * 4 3 2 25 25 O 1.21283 * 124.94297 * 359.56441 * 24 4 3 26 26 H 1.09000 * 109.47486 * 299.99829 * 1 2 3 27 27 H 1.09001 * 109.47362 * 60.00551 * 1 2 3 28 28 H 1.09002 * 109.46716 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47486 * 240.00171 * 2 1 3 30 30 H 1.09001 * 109.47362 * 119.99448 * 2 1 3 31 31 H 1.08993 * 109.46955 * 300.00075 * 3 2 1 32 32 H 1.09000 * 109.47050 * 59.99904 * 3 2 1 33 33 H 1.09001 * 110.24891 * 316.01611 * 5 4 3 34 34 H 1.08996 * 110.24532 * 77.93735 * 5 4 3 35 35 H 1.08997 * 109.47457 * 294.99689 * 8 6 5 36 36 H 1.09001 * 109.47014 * 54.99843 * 8 6 5 37 37 H 1.00903 * 110.99932 * 56.05024 * 9 8 6 38 38 H 1.08996 * 109.46808 * 300.00414 * 10 9 8 39 39 H 1.08999 * 109.46633 * 60.00439 * 10 9 8 40 40 H 1.09003 * 109.46999 * 300.00807 * 13 11 10 41 41 H 1.08993 * 109.47380 * 60.00131 * 13 11 10 42 42 H 1.09002 * 109.47636 * 180.02562 * 13 11 10 43 43 H 1.08996 * 109.47562 * 304.99746 * 14 11 10 44 44 H 1.08997 * 109.47142 * 64.99873 * 14 11 10 45 45 H 0.97000 * 120.00040 * 180.02562 * 18 17 15 46 46 H 1.09003 * 110.48734 * 143.47416 * 23 6 5 47 47 H 1.08998 * 110.48816 * 265.98882 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.3335 1.4425 -1.2107 6 6 5.7413 1.0070 -0.7470 7 1 6.5158 1.5393 -1.2991 8 6 5.9180 -0.5068 -0.8816 9 7 7.3016 -0.8699 -0.5470 10 6 7.5087 -2.3195 -0.6649 11 6 8.9576 -2.6582 -0.3089 12 1 9.1901 -2.2651 0.6807 13 6 9.8965 -2.0300 -1.3408 14 6 9.1413 -4.1771 -0.3104 15 6 10.5329 -4.5153 0.1589 16 1 11.2180 -3.7258 0.4305 17 6 10.9316 -5.8325 0.2414 18 7 12.1462 -6.1276 0.6505 19 14 9.7470 -7.1981 -0.2291 20 1 9.8929 -7.5036 -1.6749 21 1 10.0520 -8.4140 0.5670 22 1 8.3544 -6.7623 0.0468 23 6 5.7294 1.4328 0.7394 24 6 4.2629 1.4486 1.1107 25 8 3.8336 1.4621 2.2450 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6765 1.9563 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.9392 0.7322 -1.9374 34 1 4.3699 2.4425 -1.6429 35 1 5.2345 -1.0144 -0.2009 36 1 5.7009 -0.8083 -1.9063 37 1 7.5481 -0.5436 0.3754 38 1 6.8361 -2.8392 0.0175 39 1 7.3025 -2.6339 -1.6880 40 1 9.6640 -2.4231 -2.3305 41 1 9.7657 -0.9479 -1.3399 42 1 10.9288 -2.2716 -1.0875 43 1 8.4115 -4.6321 0.3593 44 1 8.9955 -4.5598 -1.3205 45 1 12.4268 -7.0544 0.7082 46 1 6.2720 0.7092 1.3478 47 1 6.1610 2.4270 0.8549 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602696145.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:04 Heat of formation + Delta-G solvation = -61.282007 kcal Electronic energy + Delta-G solvation = -22330.775288 eV Core-core repulsion = 19126.283786 eV Total energy + Delta-G solvation = -3204.491502 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.82540 -37.49472 -36.57642 -35.47252 -33.79442 -32.20949 -31.16673 -28.36433 -27.54767 -26.77894 -25.62193 -23.97738 -22.20868 -21.90054 -20.92208 -19.66636 -19.10498 -17.02094 -16.86688 -16.59168 -16.00401 -15.31671 -14.90703 -14.87253 -14.40757 -14.07916 -14.04350 -13.81717 -13.55896 -13.37690 -12.95712 -12.80673 -12.48399 -12.44098 -12.19321 -11.88165 -11.74336 -11.67887 -11.49860 -11.48616 -11.14687 -11.09023 -10.96356 -10.73053 -10.44723 -9.95785 -9.79899 -9.73358 -9.41844 -9.06473 -8.99980 -8.50942 -8.27745 -6.01170 -3.98094 2.36737 2.71076 3.31734 3.39277 3.42640 3.97016 4.08330 4.30636 4.47449 4.52275 4.58223 4.61445 4.81034 4.89960 5.02289 5.10013 5.17439 5.25349 5.26717 5.32242 5.39557 5.40794 5.47935 5.57313 5.64782 5.66865 5.73277 5.77354 5.85813 5.90273 6.01741 6.26373 6.28267 6.40586 6.57815 6.82921 6.83426 7.02246 7.13281 7.19965 7.31037 7.44643 7.53384 7.83551 7.94719 8.58234 9.04628 9.61758 11.12272 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021955 B = 0.002974 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.031108 B = 9413.143791 C = 9998.903101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.142 4.142 3 C 0.126 3.874 4 N -0.621 5.621 5 C 0.107 3.893 6 C -0.097 4.097 7 H 0.110 0.890 8 C 0.066 3.934 9 N -0.685 5.685 10 C 0.061 3.939 11 C -0.074 4.074 12 H 0.060 0.940 13 C -0.124 4.124 14 C -0.009 4.009 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.065 3.935 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.153 4.153 24 C 0.517 3.483 25 O -0.534 6.534 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.076 0.924 37 H 0.338 0.662 38 H 0.024 0.976 39 H 0.067 0.933 40 H 0.038 0.962 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.012 0.988 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.102 0.898 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.712 17.229 -5.996 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.004 3.996 4 N -0.356 5.356 5 C -0.016 4.016 6 C -0.116 4.116 7 H 0.128 0.872 8 C -0.064 4.064 9 N -0.316 5.316 10 C -0.067 4.067 11 C -0.093 4.093 12 H 0.078 0.922 13 C -0.182 4.182 14 C -0.047 4.047 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.136 4.136 18 N -0.544 5.544 19 Si 0.706 3.294 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.193 4.193 24 C 0.305 3.695 25 O -0.411 6.411 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.120 0.880 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -20.662 17.218 -5.998 27.556 hybrid contribution -1.026 -1.282 0.471 1.708 sum -21.688 15.935 -5.527 27.474 Atomic orbital electron populations 1.21691 0.94948 1.02172 1.01889 1.21916 0.96291 0.97061 1.02819 1.21428 0.78006 0.97135 1.03027 1.48332 1.06122 1.73670 1.07448 1.22162 0.90263 1.01844 0.87364 1.22233 0.96607 0.97414 0.95394 0.87221 1.21934 0.90212 0.93023 1.01218 1.60557 1.21179 1.15610 1.34248 1.22184 0.98212 0.85748 1.00584 1.21009 0.91453 0.98002 0.98832 0.92185 1.21598 1.00081 0.98685 0.97788 1.19615 0.97753 0.91159 0.96208 1.21132 0.96945 0.93224 1.43737 0.90801 1.25031 0.94954 0.98755 0.94869 1.69915 1.17844 1.18701 1.47986 0.86806 0.82189 0.81779 0.78650 1.20366 1.21490 1.19175 1.22445 0.94312 1.04901 0.97643 1.21006 0.89469 0.74736 0.84277 1.90725 1.78825 1.50297 1.21241 0.92482 0.92582 0.92300 0.91665 0.91541 0.90416 0.90114 0.90191 0.90725 0.95482 0.90540 0.84374 0.95817 0.91468 0.94245 0.93651 0.92238 0.96986 0.97063 0.92834 0.87993 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.56 16 2 C -0.14 -1.10 6.26 -26.73 -0.17 -1.27 16 3 C 0.13 0.97 5.94 -4.04 -0.02 0.94 16 4 N -0.62 -5.51 2.93 -172.41 -0.51 -6.02 16 5 C 0.11 0.69 6.90 -3.12 -0.02 0.66 16 6 C -0.10 -0.73 3.37 -88.99 -0.30 -1.03 16 7 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 8 C 0.07 0.65 5.06 -3.82 -0.02 0.63 16 9 N -0.68 -8.55 5.96 -113.78 -0.68 -9.23 16 10 C 0.06 0.96 5.07 -3.82 -0.02 0.94 16 11 C -0.07 -1.42 2.48 -90.62 -0.22 -1.65 16 12 H 0.06 1.19 8.14 -51.94 -0.42 0.77 16 13 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.51 -14.46 8.96 -34.44 -0.31 -14.77 16 16 H 0.07 2.24 7.30 -52.48 -0.38 1.85 16 17 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 18 N -0.91 -28.02 13.96 55.43 0.77 -27.25 16 19 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 23 C -0.15 -1.36 6.27 -26.74 -0.17 -1.53 16 24 C 0.52 6.03 8.02 -10.85 -0.09 5.94 16 25 O -0.53 -8.49 17.59 5.55 0.10 -8.39 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 33 H 0.08 0.44 7.88 -51.93 -0.41 0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.34 4.11 7.46 -39.29 -0.29 3.81 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 42 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 43 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.10 0.99 6.80 -51.93 -0.35 0.64 16 47 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -32.96 371.96 -9.10 -42.05 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.89 Total: -1.78 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -0.84 Total: -12.19 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: -0.41 Total: -42.49 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.10 Total: -8.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.96 -9.10 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696145.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.228 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds