Wall clock time and date at job start Tue Mar 31 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46714 * 2 1 4 4 N 1.46502 * 109.46912 * 180.02562 * 3 2 1 5 5 C 1.46767 * 124.35043 * 90.00248 * 4 3 2 6 6 C 1.54480 * 105.47449 * 163.00463 * 5 4 3 7 7 H 1.08997 * 110.97290 * 143.56927 * 6 5 4 8 8 C 1.52998 * 110.97063 * 267.29541 * 6 5 4 9 9 N 1.46898 * 109.47116 * 181.91115 * 8 6 5 10 10 C 1.46907 * 110.99723 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.46923 * 179.97438 * 10 9 8 12 12 H 1.09000 * 109.47193 * 305.00000 * 11 10 9 13 13 C 1.52998 * 109.47270 * 64.99762 * 11 10 9 14 14 C 1.53001 * 109.47197 * 184.99875 * 11 10 9 15 15 C 1.50694 * 109.47168 * 175.00067 * 14 11 10 16 16 H 1.08000 * 120.00563 * 0.02562 * 15 14 11 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.54629 * 101.79986 * 25.43504 * 6 5 4 24 24 C 1.34424 * 124.35219 * 270.02514 * 4 3 2 25 25 O 1.21285 * 124.93882 * 0.34596 * 24 4 3 26 26 H 1.08999 * 109.47052 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47165 * 299.99689 * 1 2 3 28 28 H 1.08996 * 109.47641 * 59.99830 * 1 2 3 29 29 H 1.09003 * 109.47393 * 240.00758 * 2 1 3 30 30 H 1.08996 * 109.47641 * 120.00170 * 2 1 3 31 31 H 1.08996 * 109.47307 * 60.00707 * 3 2 1 32 32 H 1.09002 * 109.47135 * 300.00003 * 3 2 1 33 33 H 1.08996 * 110.24371 * 43.99990 * 5 4 3 34 34 H 1.09002 * 110.24640 * 282.00143 * 5 4 3 35 35 H 1.09006 * 109.47120 * 61.90722 * 8 6 5 36 36 H 1.08997 * 109.47183 * 301.91453 * 8 6 5 37 37 H 1.00894 * 111.00126 * 303.94912 * 9 8 6 38 38 H 1.09007 * 109.47208 * 59.99959 * 10 9 8 39 39 H 1.09000 * 109.47152 * 299.99818 * 10 9 8 40 40 H 1.08997 * 109.47437 * 179.97438 * 13 11 10 41 41 H 1.08995 * 109.47676 * 300.00328 * 13 11 10 42 42 H 1.09007 * 109.47149 * 60.00032 * 13 11 10 43 43 H 1.09007 * 109.46922 * 54.99769 * 14 11 10 44 44 H 1.09003 * 109.46836 * 295.00525 * 14 11 10 45 45 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 46 46 H 1.08995 * 110.49119 * 93.86197 * 23 6 5 47 47 H 1.09000 * 110.48448 * 216.50760 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.3325 1.4429 -1.2127 6 6 5.7407 1.8780 -0.7501 7 1 6.5148 1.3462 -1.3033 8 6 5.9178 3.3918 -0.8844 9 7 7.2803 3.7632 -0.4800 10 6 7.4869 5.2130 -0.5957 11 6 8.9136 5.5607 -0.1662 12 1 9.0955 5.1744 0.8367 13 6 9.9082 4.9307 -1.1434 14 6 9.0906 7.0804 -0.1673 15 6 10.4541 7.4278 0.3723 16 1 11.1274 6.6431 0.6844 17 6 10.8421 8.7474 0.4676 18 7 10.0225 9.7030 0.0871 19 14 12.5320 9.1780 1.1371 20 1 12.7038 10.6531 1.1360 21 1 12.6600 8.6654 2.5249 22 1 13.5759 8.5579 0.2822 23 6 5.7311 1.4517 0.7362 24 6 4.2639 1.4420 1.1088 25 8 3.8355 1.4353 2.2435 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9376 2.1534 -1.9388 34 1 4.3696 0.4426 -1.6443 35 1 5.1972 3.9002 -0.2438 36 1 5.7534 3.6862 -1.9209 37 1 7.4794 3.4435 0.4561 38 1 6.7772 5.7337 0.0473 39 1 7.3334 5.5205 -1.6301 40 1 10.9246 5.1788 -0.8377 41 1 9.7822 3.8481 -1.1427 42 1 9.7264 5.3170 -2.1464 43 1 8.3245 7.5358 0.4604 44 1 8.9963 7.4564 -1.1861 45 1 10.2954 10.6314 0.1545 46 1 6.1605 0.4565 0.8505 47 1 6.2748 2.1749 1.3440 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602696146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:08 Heat of formation + Delta-G solvation = -64.694204 kcal Electronic energy + Delta-G solvation = -22120.538519 eV Core-core repulsion = 18915.899053 eV Total energy + Delta-G solvation = -3204.639466 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78455 -37.42219 -36.51043 -35.43733 -33.73557 -32.19566 -31.04769 -28.27640 -27.12727 -26.59766 -25.58433 -24.03274 -22.21818 -22.14943 -20.86344 -19.61796 -19.06886 -17.11185 -16.58615 -16.27044 -15.98135 -15.21836 -14.93372 -14.78011 -14.37012 -14.24486 -13.86411 -13.83699 -13.67947 -13.19937 -12.94759 -12.50858 -12.49590 -12.36010 -12.13624 -11.79791 -11.71299 -11.49062 -11.47268 -11.28087 -11.16602 -11.03104 -10.83587 -10.74363 -10.28763 -10.23318 -9.92110 -9.69745 -9.15126 -9.00935 -8.93128 -8.31683 -8.19125 -5.96587 -3.97738 2.41191 2.73259 3.35438 3.39693 3.42230 4.02485 4.11634 4.36168 4.49221 4.54387 4.57882 4.65944 4.82404 4.91283 5.05378 5.14311 5.20015 5.26460 5.30513 5.39045 5.40848 5.46843 5.53768 5.61798 5.66811 5.71611 5.76490 5.84491 5.86079 5.97131 6.15016 6.29373 6.39856 6.53814 6.67760 6.86710 6.99618 7.17180 7.19100 7.31843 7.58124 7.70146 7.85746 7.98232 8.03423 8.47340 9.08391 9.65494 11.14900 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.036069 B = 0.002484 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.095989 B =11271.569691 C =11346.895755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.621 5.621 5 C 0.107 3.893 6 C -0.097 4.097 7 H 0.108 0.892 8 C 0.065 3.935 9 N -0.686 5.686 10 C 0.064 3.936 11 C -0.083 4.083 12 H 0.053 0.947 13 C -0.122 4.122 14 C 0.027 3.973 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.288 1.288 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.152 4.152 24 C 0.517 3.483 25 O -0.534 6.534 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.027 0.973 36 H 0.077 0.923 37 H 0.336 0.664 38 H 0.024 0.976 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.106 0.894 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.744 -19.979 -4.820 25.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.003 3.997 4 N -0.355 5.355 5 C -0.016 4.016 6 C -0.116 4.116 7 H 0.127 0.873 8 C -0.065 4.065 9 N -0.317 5.317 10 C -0.065 4.065 11 C -0.102 4.102 12 H 0.072 0.928 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.214 1.214 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.193 4.193 24 C 0.305 3.695 25 O -0.411 6.411 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.124 0.876 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.792 -19.902 -4.861 25.867 hybrid contribution 0.342 0.730 1.027 1.306 sum -15.450 -19.172 -3.834 24.919 Atomic orbital electron populations 1.21695 0.94964 1.02049 1.02058 1.21908 0.96303 0.97145 1.02575 1.21445 0.78017 0.97019 1.03219 1.48320 1.06101 1.73643 1.07455 1.22163 0.90342 1.01801 0.87307 1.22237 0.96520 0.97501 0.95380 0.87336 1.21931 0.90466 0.92869 1.01187 1.60587 1.23777 1.15996 1.31365 1.22161 0.98259 0.85309 1.00747 1.21204 0.91439 0.99512 0.98032 0.92827 1.21585 0.99500 0.98474 0.98407 1.19118 0.96740 0.88049 0.97119 1.21198 1.00477 0.91710 1.41741 0.92601 1.25033 0.97168 0.96688 0.95736 1.69958 1.35851 0.99734 1.48147 0.86678 0.84770 0.77116 0.79549 1.21398 1.20307 1.20269 1.22459 0.94275 1.04821 0.97700 1.21034 0.89471 0.74710 0.84277 1.90723 1.78864 1.50297 1.21212 0.92394 0.92427 0.92511 0.91768 0.91612 0.90083 0.90354 0.90117 0.90843 0.95481 0.90476 0.84549 0.95765 0.91459 0.92779 0.93911 0.94183 0.96966 0.96570 0.93053 0.87580 0.87980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.14 -1.00 6.26 -26.73 -0.17 -1.16 16 3 C 0.12 1.00 5.93 -4.04 -0.02 0.98 16 4 N -0.62 -5.75 2.93 -172.36 -0.51 -6.25 16 5 C 0.11 0.73 6.90 -3.12 -0.02 0.71 16 6 C -0.10 -0.78 3.38 -88.99 -0.30 -1.08 16 7 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 8 C 0.07 0.69 5.07 -3.83 -0.02 0.67 16 9 N -0.69 -9.09 5.96 -113.77 -0.68 -9.76 16 10 C 0.06 1.07 5.07 -3.82 -0.02 1.05 16 11 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 12 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 13 C -0.12 -2.32 8.89 37.16 0.33 -1.99 16 14 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 15 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 16 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 23 C -0.15 -1.42 6.29 -26.69 -0.17 -1.59 16 24 C 0.52 6.23 8.02 -10.81 -0.09 6.15 16 25 O -0.53 -8.69 17.60 5.55 0.10 -8.59 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.47 7.91 -51.93 -0.41 0.06 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.34 4.32 7.24 -39.29 -0.28 4.04 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.10 6.95 -51.93 -0.36 0.74 16 41 H 0.04 0.71 7.75 -51.93 -0.40 0.31 16 42 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.10 1.04 6.59 -51.93 -0.34 0.70 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -32.53 375.30 -9.46 -41.99 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.90 Total: -2.16 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -0.84 Total: -11.29 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: -0.45 Total: -42.37 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.10 Total: -8.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.53 -9.46 -41.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.700 kcal (2) G-P(sol) polarization free energy of solvation -32.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds