Wall clock time and date at job start Tue Mar 31 2020 06:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53007 * 109.46521 * 2 1 4 4 N 1.46501 * 109.46500 * 180.02562 * 3 2 1 5 5 C 1.46770 * 124.34838 * 269.94617 * 4 3 2 6 6 C 1.54472 * 105.47274 * 197.04192 * 5 4 3 7 7 H 1.09000 * 111.00064 * 216.45718 * 6 5 4 8 8 C 1.53004 * 110.97064 * 92.70683 * 6 5 4 9 9 N 1.46895 * 109.47035 * 181.16619 * 8 6 5 10 10 C 1.46906 * 110.99789 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47053 * 179.97438 * 10 9 8 12 12 H 1.09002 * 109.47495 * 305.00162 * 11 10 9 13 13 C 1.53005 * 109.46814 * 65.00187 * 11 10 9 14 14 C 1.53000 * 109.47125 * 184.99886 * 11 10 9 15 15 C 1.50699 * 109.47133 * 175.00170 * 14 11 10 16 16 H 1.07994 * 120.00160 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99778 * 180.02562 * 15 14 11 18 18 N 1.31511 * 120.00181 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99735 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47506 * 59.99442 * 19 17 15 21 21 H 1.48501 * 109.47124 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46983 * 299.99279 * 19 17 15 23 23 C 1.54630 * 101.76648 * 334.58529 * 6 5 4 24 24 C 1.34417 * 124.35066 * 89.97839 * 4 3 2 25 25 O 1.21280 * 124.94084 * 359.60183 * 24 4 3 26 26 H 1.09005 * 109.46429 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47022 * 299.99907 * 1 2 3 28 28 H 1.08995 * 109.47100 * 59.99797 * 1 2 3 29 29 H 1.09002 * 109.47211 * 240.00301 * 2 1 3 30 30 H 1.08991 * 109.47238 * 119.99705 * 2 1 3 31 31 H 1.09002 * 109.47133 * 60.00253 * 3 2 1 32 32 H 1.08991 * 109.47124 * 299.99775 * 3 2 1 33 33 H 1.09004 * 110.24089 * 78.04343 * 5 4 3 34 34 H 1.09000 * 110.24488 * 316.04507 * 5 4 3 35 35 H 1.08996 * 109.46863 * 61.16461 * 8 6 5 36 36 H 1.09002 * 109.46661 * 301.16638 * 8 6 5 37 37 H 1.00902 * 111.00273 * 303.95364 * 9 8 6 38 38 H 1.08992 * 109.47459 * 299.99826 * 10 9 8 39 39 H 1.09004 * 109.47040 * 59.99976 * 10 9 8 40 40 H 1.08993 * 109.46967 * 299.99663 * 13 11 10 41 41 H 1.08997 * 109.46762 * 60.00378 * 13 11 10 42 42 H 1.09004 * 109.46776 * 179.97438 * 13 11 10 43 43 H 1.08994 * 109.47370 * 295.00462 * 14 11 10 44 44 H 1.09006 * 109.46810 * 55.00266 * 14 11 10 45 45 H 0.96997 * 119.99969 * 180.02562 * 18 17 15 46 46 H 1.09003 * 110.48333 * 143.47693 * 23 6 5 47 47 H 1.08991 * 110.48769 * 265.98544 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3336 1.4436 1.2108 6 6 5.7411 1.8795 0.7470 7 1 6.5163 1.3481 1.2991 8 6 5.9173 3.3934 0.8810 9 7 7.2540 3.7747 0.4060 10 6 7.4592 5.2250 0.5194 11 6 8.8593 5.5828 0.0169 12 1 9.6009 4.9953 0.5583 13 6 8.9583 5.2758 -1.4787 14 6 9.1196 7.0724 0.2501 15 6 10.5404 7.3997 -0.1309 16 1 11.1924 6.6232 -0.5026 17 6 11.0079 8.6907 -0.0050 18 7 10.2137 9.6365 0.4471 19 14 12.7688 9.0966 -0.4779 20 1 12.9828 8.7758 -1.9120 21 1 13.0214 10.5424 -0.2515 22 1 13.7020 8.2945 0.3534 23 6 5.7294 1.4531 -0.7393 24 6 4.2630 1.4424 -1.1107 25 8 3.8336 1.4352 -2.2449 26 1 -0.3632 -1.0278 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8899 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 4.3716 0.4434 1.6425 34 1 3.9389 2.1540 1.9372 35 1 5.8077 3.6808 1.9267 36 1 5.1606 3.9016 0.2833 37 1 7.9721 3.2678 0.9014 38 1 6.7133 5.7455 -0.0811 39 1 7.3600 5.5254 1.5625 40 1 8.7729 4.2146 -1.6448 41 1 8.2168 5.8634 -2.0200 42 1 9.9556 5.5312 -1.8368 43 1 8.4349 7.6608 -0.3606 44 1 8.9620 7.3084 1.3025 45 1 10.5425 10.5448 0.5353 46 1 6.2718 2.1767 -1.3480 47 1 6.1615 0.4592 -0.8544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602696147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:11 Heat of formation + Delta-G solvation = -64.773282 kcal Electronic energy + Delta-G solvation = -22158.504507 eV Core-core repulsion = 18953.861612 eV Total energy + Delta-G solvation = -3204.642895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69388 -37.37543 -36.45847 -35.40320 -33.73215 -32.17985 -31.05292 -28.16253 -27.09708 -26.58772 -25.55329 -23.99069 -22.16858 -22.12096 -20.96797 -19.55224 -19.02779 -17.02746 -16.43171 -16.24371 -15.85694 -15.42915 -14.85337 -14.71737 -14.36377 -14.20074 -13.93068 -13.75545 -13.55545 -13.23081 -12.88946 -12.50490 -12.43962 -12.23176 -12.08508 -11.75591 -11.70536 -11.56140 -11.44711 -11.25369 -11.10011 -10.99458 -10.83598 -10.74126 -10.28382 -10.23351 -9.82737 -9.69456 -9.15044 -8.97973 -8.90654 -8.31989 -8.18072 -5.96845 -3.98015 2.51590 2.79433 3.35076 3.39454 3.41950 4.02283 4.21109 4.45400 4.49529 4.59840 4.61701 4.71024 4.81978 4.91571 5.08807 5.20452 5.23675 5.29207 5.31518 5.38823 5.44189 5.51387 5.56643 5.63772 5.72610 5.73418 5.86447 5.87586 5.92270 6.01768 6.15388 6.35680 6.41826 6.54365 6.68834 6.94028 7.00837 7.18216 7.20422 7.32173 7.60292 7.69849 7.85829 8.03249 8.07535 8.47129 9.08182 9.65251 11.14644 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041304 B = 0.002481 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.732189 B =11284.986249 C =11417.984527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.125 3.875 4 N -0.623 5.623 5 C 0.108 3.892 6 C -0.097 4.097 7 H 0.097 0.903 8 C 0.065 3.935 9 N -0.686 5.686 10 C 0.065 3.935 11 C -0.082 4.082 12 H 0.053 0.947 13 C -0.123 4.123 14 C 0.027 3.973 15 C -0.513 4.513 16 H 0.056 0.944 17 C 0.054 3.946 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.146 4.146 24 C 0.518 3.482 25 O -0.535 6.535 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.338 0.662 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.120 0.880 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 -19.835 4.237 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.179 4.179 3 C 0.003 3.997 4 N -0.357 5.357 5 C -0.016 4.016 6 C -0.116 4.116 7 H 0.115 0.885 8 C -0.064 4.064 9 N -0.317 5.317 10 C -0.064 4.064 11 C -0.101 4.101 12 H 0.072 0.928 13 C -0.180 4.180 14 C -0.010 4.010 15 C -0.551 4.551 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.186 4.186 24 C 0.307 3.693 25 O -0.411 6.411 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.155 0.845 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.138 0.862 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.275 -19.593 3.012 25.648 hybrid contribution 1.014 0.474 0.914 1.445 sum -15.262 -19.119 3.925 24.776 Atomic orbital electron populations 1.21697 0.95009 1.02010 1.02044 1.21912 0.96259 0.97227 1.02536 1.21428 0.78179 0.96929 1.03156 1.48331 1.06002 1.73965 1.07445 1.22122 0.90476 1.01578 0.87392 1.22176 0.96200 0.97099 0.96171 0.88494 1.21925 0.93072 0.93283 0.98159 1.60479 1.02606 1.07595 1.61011 1.22148 0.99641 0.86004 0.98572 1.21199 0.92748 1.00011 0.96128 0.92808 1.21592 1.01311 0.99205 0.95941 1.19118 0.96696 0.88568 0.96652 1.21197 0.97137 0.93959 1.42820 0.92603 1.25029 0.97473 0.96612 0.95511 1.69954 1.35635 1.01486 1.46622 0.86681 0.85258 0.77133 0.79055 1.20256 1.21402 1.20325 1.22377 0.93964 1.04743 0.97491 1.21099 0.89607 0.74426 0.84172 1.90712 1.78883 1.50260 1.21273 0.92429 0.92555 0.92406 0.91598 0.91848 0.90476 0.90073 0.91035 0.90329 0.94927 0.91136 0.84457 0.91597 0.95723 0.93902 0.94184 0.92779 0.96587 0.96980 0.93053 0.86220 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.14 -1.02 6.26 -26.72 -0.17 -1.19 16 3 C 0.13 1.03 5.93 -4.04 -0.02 1.01 16 4 N -0.62 -5.94 2.93 -172.41 -0.51 -6.44 16 5 C 0.11 0.75 6.90 -3.12 -0.02 0.73 16 6 C -0.10 -0.78 3.34 -88.99 -0.30 -1.07 16 7 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.07 0.68 5.03 -3.82 -0.02 0.66 16 9 N -0.69 -8.87 5.44 -113.78 -0.62 -9.49 16 10 C 0.06 1.07 5.08 -3.82 -0.02 1.05 16 11 C -0.08 -1.63 2.48 -90.62 -0.22 -1.86 16 12 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.12 -2.38 8.89 37.16 0.33 -2.05 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 15 C -0.51 -14.33 8.41 -34.44 -0.29 -14.62 16 16 H 0.06 1.52 7.05 -52.49 -0.37 1.15 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.15 -1.47 6.34 -26.74 -0.17 -1.64 16 24 C 0.52 6.50 8.02 -10.86 -0.09 6.41 16 25 O -0.53 -8.97 17.59 5.56 0.10 -8.87 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.47 7.91 -51.93 -0.41 0.06 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.34 3.99 8.73 -39.29 -0.34 3.64 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.12 1.44 7.52 -51.93 -0.39 1.05 16 47 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 377.16 15.07 5.68 5.68 Total: -1.00 -32.42 377.16 -9.48 -41.90 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -9.01 Total: -2.16 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.84 Total: -11.05 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.39 Total: -42.22 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.10 Total: -8.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.42 -9.48 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602696147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.869 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds