Wall clock time and date at job start Tue Mar 31 2020 06:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47405 * 2 1 4 4 H 1.09004 * 109.46816 * 305.00656 * 3 2 1 5 5 O 1.42899 * 109.46621 * 64.99769 * 3 2 1 6 6 C 1.52996 * 109.47154 * 185.00270 * 3 2 1 7 7 N 1.46903 * 109.46952 * 179.97438 * 6 3 2 8 8 C 1.46949 * 111.00009 * 169.99558 * 7 6 3 9 9 C 1.53051 * 109.36657 * 183.18983 * 8 7 6 10 10 N 1.46964 * 109.36197 * 301.60157 * 9 8 7 11 11 C 1.46903 * 110.99955 * 183.18742 * 10 9 8 12 12 C 1.52992 * 109.47037 * 160.86286 * 11 10 9 13 13 C 1.50701 * 115.55321 * 60.48867 * 12 11 10 14 14 H 1.07997 * 120.00422 * 232.83836 * 13 12 11 15 15 C 1.37886 * 119.99818 * 52.83846 * 13 12 11 16 16 N 1.31513 * 119.99943 * 5.89506 * 15 13 12 17 17 Si 1.86794 * 120.00057 * 186.18135 * 15 13 12 18 18 H 1.48495 * 109.47532 * 89.99389 * 17 15 13 19 19 H 1.48500 * 109.47190 * 209.99741 * 17 15 13 20 20 H 1.48508 * 109.46821 * 329.99411 * 17 15 13 21 21 C 1.52999 * 117.49795 * 206.15802 * 12 11 10 22 22 C 1.52998 * 117.50047 * 274.81705 * 12 11 10 23 23 C 1.46960 * 110.88096 * 59.32131 * 10 9 8 24 24 C 1.46958 * 111.00076 * 293.80085 * 7 6 3 25 25 H 1.08999 * 109.47038 * 300.00268 * 1 2 3 26 26 H 1.09004 * 109.47191 * 60.00095 * 1 2 3 27 27 H 1.09000 * 109.46851 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47189 * 240.00425 * 2 1 3 29 29 H 1.08997 * 109.47428 * 120.00234 * 2 1 3 30 30 H 0.96699 * 113.99918 * 60.00836 * 5 3 2 31 31 H 1.08994 * 109.47391 * 59.99783 * 6 3 2 32 32 H 1.09003 * 109.46918 * 299.99553 * 6 3 2 33 33 H 1.08997 * 109.48722 * 63.22507 * 8 7 6 34 34 H 1.08998 * 109.49283 * 303.15701 * 8 7 6 35 35 H 1.08994 * 109.49516 * 181.63508 * 9 8 7 36 36 H 1.09002 * 109.49191 * 61.56434 * 9 8 7 37 37 H 1.09001 * 109.47172 * 40.86112 * 11 10 9 38 38 H 1.09003 * 109.46987 * 280.86450 * 11 10 9 39 39 H 0.96999 * 120.00038 * 185.06862 * 16 15 13 40 40 H 1.09002 * 117.50096 * 215.00242 * 21 12 11 41 41 H 1.08999 * 117.50001 * 0.02682 * 21 12 11 42 42 H 1.08998 * 117.50063 * 359.97438 * 22 12 11 43 43 H 1.09003 * 117.50206 * 144.97341 * 22 12 11 44 44 H 1.08997 * 109.49083 * 60.64290 * 23 10 9 45 45 H 1.08998 * 109.49087 * 180.71198 * 23 10 9 46 46 H 1.09000 * 109.48512 * 296.77409 * 24 7 6 47 47 H 1.09000 * 109.48710 * 56.81912 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0814 1.2211 6 6 3.5649 1.4443 -0.1258 7 7 4.0545 2.8293 -0.1264 8 6 5.5185 2.8704 -0.0068 9 6 5.9810 4.3274 0.0689 10 7 5.5333 5.0437 -1.1338 11 6 6.0229 6.4288 -1.1344 12 6 5.9646 6.9896 -2.5566 13 6 4.5943 7.0339 -3.1823 14 1 4.4282 6.5861 -4.1509 15 6 3.5526 7.6460 -2.5179 16 7 3.7780 8.2915 -1.3945 17 14 1.8200 7.5518 -3.2095 18 1 1.1344 6.3522 -2.6656 19 1 1.0656 8.7711 -2.8227 20 1 1.8825 7.4574 -4.6903 21 6 6.9408 8.1122 -2.9138 22 6 7.1528 6.7050 -3.4775 23 6 4.0691 5.0027 -1.2533 24 6 3.6068 3.5457 -1.3289 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.0142 1.6542 2.0139 31 1 3.8532 0.9570 -1.0571 32 1 3.9995 0.9053 0.7161 33 1 5.9680 2.3910 -0.8764 34 1 5.8245 2.3444 0.8975 35 1 7.0687 4.3612 0.1284 36 1 5.5532 4.7993 0.9535 37 1 7.0525 6.4503 -0.7772 38 1 5.3982 7.0353 -0.4787 39 1 3.0361 8.6590 -0.8891 40 1 6.5920 8.8828 -3.6014 41 1 7.6249 8.4509 -2.1358 42 1 7.9762 6.1185 -3.0701 43 1 6.9433 6.5493 -4.5359 44 1 3.6197 5.4822 -0.3837 45 1 3.7632 5.5287 -2.1576 46 1 4.0346 3.0739 -2.2135 47 1 2.5190 3.5116 -1.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602785457.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:10 Heat of formation + Delta-G solvation = -13.706965 kcal Electronic energy + Delta-G solvation = -23950.381086 eV Core-core repulsion = 20747.952592 eV Total energy + Delta-G solvation = -3202.428494 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.09443 -37.68287 -36.31476 -33.84900 -32.78307 -32.22710 -30.19186 -29.05959 -26.37993 -25.64000 -23.62077 -22.84907 -21.96800 -21.09192 -20.98221 -19.05652 -18.91455 -16.39977 -16.11765 -15.90809 -15.33606 -14.89988 -14.68427 -14.44097 -14.13886 -14.02152 -13.50976 -13.36362 -13.22903 -12.91266 -12.56118 -12.20429 -12.01868 -11.80464 -11.66754 -11.41209 -11.12599 -11.03506 -11.00460 -10.78590 -10.71189 -10.47783 -10.40283 -10.14835 -10.07876 -9.88424 -9.69715 -9.27026 -8.83486 -8.49231 -7.97583 -7.93042 -7.14696 -6.04013 -4.02130 3.27698 3.36631 3.37680 4.03743 4.36856 4.58142 4.70913 4.83540 4.95082 5.00660 5.16889 5.22517 5.38858 5.43921 5.60603 5.63382 5.67295 5.69584 5.72314 5.78287 5.82317 6.01420 6.09822 6.12078 6.13168 6.15502 6.26811 6.38076 6.46487 6.50519 6.70474 6.81276 6.84325 6.95281 7.06735 7.25600 7.34117 7.40252 7.46987 7.53898 7.58838 7.81021 7.89562 8.26303 8.31254 8.51577 8.90862 9.49870 10.99932 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.005478 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.819035 B = 5110.589392 C = 6177.864832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.098 0.902 5 O -0.544 6.544 6 C 0.023 3.977 7 N -0.529 5.529 8 C 0.064 3.936 9 C 0.055 3.945 10 N -0.523 5.523 11 C 0.096 3.904 12 C 0.064 3.936 13 C -0.477 4.477 14 H 0.060 0.940 15 C 0.072 3.928 16 N -0.874 5.874 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.272 1.272 21 C -0.193 4.193 22 C -0.200 4.200 23 C 0.045 3.955 24 C 0.056 3.944 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.367 0.633 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.035 0.965 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.027 0.973 45 H 0.136 0.864 46 H 0.034 0.966 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -14.298 4.482 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.115 0.885 5 O -0.348 6.348 6 C -0.106 4.106 7 N -0.254 5.254 8 C -0.064 4.064 9 C -0.074 4.074 10 N -0.247 5.247 11 C -0.031 4.031 12 C 0.063 3.937 13 C -0.515 4.515 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.511 5.511 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.197 1.197 21 C -0.232 4.232 22 C -0.238 4.238 23 C -0.082 4.082 24 C -0.072 4.072 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.213 0.787 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.153 0.847 46 H 0.052 0.948 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.674 -13.717 4.189 14.440 hybrid contribution -0.486 -0.499 0.084 0.701 sum -2.160 -14.216 4.273 15.001 Atomic orbital electron populations 1.21688 0.95116 1.01136 1.02582 1.22225 0.97170 0.97511 1.02408 1.21982 0.92670 0.91930 0.88511 0.88471 1.86645 1.76043 1.57137 1.14965 1.22804 0.96281 0.90854 1.00618 1.62156 1.10506 1.12389 1.40359 1.22085 0.87344 0.97328 0.99652 1.22097 0.98818 0.93311 0.93208 1.62034 1.11524 1.16197 1.34991 1.21568 0.96450 0.86838 0.98288 1.18763 0.89357 0.94592 0.90993 1.20446 0.92306 1.34680 1.04032 0.92186 1.24931 0.98613 0.94132 0.95454 1.69936 1.31157 1.34841 1.15170 0.86866 0.85270 0.78026 0.79711 1.19965 1.21105 1.19706 1.22846 1.05623 0.91702 1.03027 1.22774 1.02809 0.99167 0.99013 1.22860 0.87096 0.93089 1.05176 1.22364 0.99183 0.96162 0.89468 0.92007 0.92717 0.93083 0.91326 0.91817 0.78711 0.94509 0.91179 0.94683 0.91676 0.91693 0.95170 0.95098 0.91180 0.92880 0.90573 0.92086 0.91663 0.91050 0.95470 0.84700 0.94810 0.91425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.02 16 2 C -0.15 -1.44 5.61 -26.73 -0.15 -1.59 16 3 C 0.11 1.32 2.85 -26.73 -0.08 1.25 16 4 H 0.10 1.36 6.49 -51.93 -0.34 1.02 16 5 O -0.54 -7.34 12.74 -35.23 -0.45 -7.79 16 6 C 0.02 0.29 4.62 -3.82 -0.02 0.28 16 7 N -0.53 -8.64 4.58 -234.48 -1.07 -9.72 16 8 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 9 C 0.05 1.00 5.57 -3.76 -0.02 0.98 16 10 N -0.52 -11.23 4.64 -234.46 -1.09 -12.32 16 11 C 0.10 2.24 4.77 -3.83 -0.02 2.22 16 12 C 0.06 1.56 1.77 -155.67 -0.28 1.28 16 13 C -0.48 -12.49 6.53 -34.44 -0.22 -12.72 16 14 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.07 1.87 3.66 -17.82 -0.07 1.81 16 16 N -0.87 -23.77 11.48 55.43 0.64 -23.13 16 17 Si 0.87 20.42 29.03 -169.99 -4.94 15.49 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 21 C -0.19 -4.49 9.95 -26.70 -0.27 -4.75 16 22 C -0.20 -4.45 9.95 -26.70 -0.27 -4.72 16 23 C 0.04 1.00 4.74 -3.77 -0.02 0.98 16 24 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 25 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.37 3.62 9.05 45.56 0.41 4.03 16 31 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.88 8.07 -51.93 -0.42 0.46 16 35 H 0.06 1.09 8.00 -51.93 -0.42 0.68 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 38 H 0.07 1.83 6.19 -51.93 -0.32 1.51 16 39 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 40 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 43 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.14 3.32 3.23 -51.93 -0.17 3.16 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.25 6.34 -51.93 -0.33 0.92 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -27.87 357.63 -10.44 -38.32 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.85 Total: 7.76 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -1.07 Total: -13.99 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -1.53 Total: -45.17 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.45 Total: -7.79 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.94 Total: 15.49 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -27.87 -10.44 -38.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602785457.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.609 kcal (2) G-P(sol) polarization free energy of solvation -27.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds