Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 H 1.08999 * 109.47035 * 55.00036 * 3 2 1 5 5 O 1.42899 * 109.47296 * 294.99940 * 3 2 1 6 6 C 1.53001 * 109.46959 * 175.00080 * 3 2 1 7 7 N 1.46902 * 109.47163 * 179.67304 * 6 3 2 8 8 C 1.46953 * 111.00242 * 75.36176 * 7 6 3 9 9 C 1.53051 * 109.36850 * 183.19103 * 8 7 6 10 10 N 1.46959 * 109.36190 * 301.59619 * 9 8 7 11 11 C 1.46894 * 110.99709 * 183.18494 * 10 9 8 12 12 C 1.53009 * 109.46807 * 163.64423 * 11 10 9 13 13 C 1.50700 * 115.54598 * 305.25334 * 12 11 10 14 14 H 1.08008 * 119.99232 * 117.18834 * 13 12 11 15 15 C 1.37868 * 120.00396 * 297.19097 * 13 12 11 16 16 N 1.31521 * 120.00193 * 173.10303 * 15 13 12 17 17 Si 1.86802 * 120.00213 * 353.37459 * 15 13 12 18 18 H 1.48498 * 109.47086 * 94.29038 * 17 15 13 19 19 H 1.48501 * 109.47398 * 214.29314 * 17 15 13 20 20 H 1.48505 * 109.46814 * 334.28886 * 17 15 13 21 21 C 1.52997 * 117.49999 * 90.92882 * 12 11 10 22 22 C 1.52995 * 117.49736 * 159.59264 * 12 11 10 23 23 C 1.46962 * 110.87882 * 59.32043 * 10 9 8 24 24 C 1.46952 * 111.00219 * 199.16219 * 7 6 3 25 25 H 1.09001 * 109.47231 * 60.00066 * 1 2 3 26 26 H 1.09002 * 109.46852 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47302 * 299.99713 * 1 2 3 28 28 H 1.09003 * 109.46980 * 239.99908 * 2 1 3 29 29 H 1.09001 * 109.47231 * 119.99934 * 2 1 3 30 30 H 0.96708 * 114.00118 * 300.00277 * 5 3 2 31 31 H 1.08999 * 109.47413 * 59.67193 * 6 3 2 32 32 H 1.09002 * 109.47161 * 299.67150 * 6 3 2 33 33 H 1.09003 * 109.48987 * 63.21662 * 8 7 6 34 34 H 1.09007 * 109.48505 * 303.15845 * 8 7 6 35 35 H 1.08995 * 109.48967 * 181.62923 * 9 8 7 36 36 H 1.08997 * 109.50642 * 61.57587 * 9 8 7 37 37 H 1.08999 * 109.47473 * 43.64671 * 11 10 9 38 38 H 1.09006 * 109.47640 * 283.63829 * 11 10 9 39 39 H 0.97001 * 119.99990 * 179.97438 * 16 15 13 40 40 H 1.09000 * 117.49387 * 214.99985 * 21 12 11 41 41 H 1.09000 * 117.49936 * 0.02626 * 21 12 11 42 42 H 1.09007 * 117.50518 * 359.96748 * 22 12 11 43 43 H 1.08999 * 117.49818 * 144.97389 * 22 12 11 44 44 H 1.08998 * 109.48891 * 60.64311 * 23 10 9 45 45 H 1.08995 * 109.49090 * 180.70923 * 23 10 9 46 46 H 1.09003 * 109.48795 * 296.77992 * 24 7 6 47 47 H 1.09009 * 109.48922 * 56.84117 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4443 0.1257 7 7 4.0551 2.8291 0.1178 8 6 3.7963 3.4868 1.4062 9 6 4.2485 4.9470 1.3306 10 7 5.6783 4.9975 0.9946 11 6 6.1685 6.3822 0.9867 12 6 7.6976 6.3822 1.0420 13 6 8.3064 5.6181 2.1894 14 1 8.9323 4.7596 1.9947 15 6 8.0644 6.0147 3.4874 16 7 8.4810 5.2728 4.4903 17 14 7.1381 7.6021 3.8218 18 1 5.6946 7.3041 4.0030 19 1 7.6712 8.2361 5.0543 20 1 7.3122 8.5279 2.6738 21 6 8.4526 6.3791 -0.2887 22 6 8.4215 7.6452 0.5712 23 6 5.9371 4.3398 -0.2938 24 6 5.4848 2.8797 -0.2181 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.0141 1.6542 -2.0139 31 1 3.9992 0.9003 -0.7130 32 1 3.8529 0.9622 1.0599 33 1 4.3498 2.9750 2.1935 34 1 2.7295 3.4474 1.6268 35 1 4.0841 5.4290 2.2942 36 1 3.6758 5.4660 0.5620 37 1 5.7736 6.9125 1.8533 38 1 5.8380 6.8796 0.0748 39 1 8.3111 5.5521 5.4036 40 1 9.3897 5.8243 -0.3342 41 1 7.8601 6.3775 -1.2036 42 1 7.8085 8.4760 0.2215 43 1 9.3380 7.9235 1.0915 44 1 5.3835 4.8516 -1.0810 45 1 7.0038 4.3792 -0.5144 46 1 6.0576 2.3609 0.5507 47 1 5.6492 2.3976 -1.1819 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602785461.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -37.916154 kcal Electronic energy + Delta-G solvation = -23615.413871 eV Core-core repulsion = 20411.935588 eV Total energy + Delta-G solvation = -3203.478283 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 3.53 seconds Orbital eigenvalues (eV) -40.55585 -39.13408 -37.97930 -35.47431 -34.13264 -33.60761 -31.86573 -30.48281 -28.32122 -27.22360 -25.08028 -24.62694 -23.23719 -23.05643 -22.06559 -20.78108 -20.66151 -18.29306 -17.41171 -17.05899 -16.82309 -16.63850 -16.00120 -15.82436 -15.81473 -15.57706 -15.18292 -14.89142 -14.72704 -14.52401 -14.19059 -13.76859 -13.57642 -13.02779 -12.96816 -12.93114 -12.84929 -12.67895 -12.31051 -12.22094 -12.16854 -12.14062 -11.87783 -11.80810 -11.67419 -11.50454 -11.30396 -10.87180 -10.69614 -10.45034 -10.20236 -9.29047 -8.94849 -8.17429 -6.15724 1.34490 1.40219 1.52161 2.44473 2.81903 2.92394 3.20851 3.45714 3.69700 3.75477 3.93833 4.08483 4.13994 4.18675 4.22216 4.24352 4.30986 4.41320 4.45726 4.49568 4.53647 4.57138 4.62588 4.66420 4.71942 4.80564 4.84846 4.91384 4.91729 4.94182 4.95889 5.07955 5.11282 5.12533 5.16030 5.33670 5.40763 5.42054 5.53680 5.80757 6.01186 6.07363 6.33766 6.39253 6.47282 6.85746 7.01924 7.48428 8.99578 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024931 B = 0.004251 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.844178 B = 6585.651475 C = 6982.990516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.120 3.880 4 H 0.081 0.919 5 O -0.563 6.563 6 C 0.022 3.978 7 N -0.527 5.527 8 C 0.067 3.933 9 C 0.059 3.941 10 N -0.537 5.537 11 C 0.101 3.899 12 C -0.016 4.016 13 C -0.444 4.444 14 H 0.024 0.976 15 C 0.026 3.974 16 N -0.955 5.955 17 Si 0.926 3.074 18 H -0.279 1.279 19 H -0.303 1.303 20 H -0.227 1.227 21 C -0.166 4.166 22 C -0.191 4.191 23 C 0.068 3.932 24 C 0.064 3.936 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.382 0.618 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.060 0.940 36 H 0.041 0.959 37 H 0.046 0.954 38 H 0.035 0.965 39 H 0.259 0.741 40 H 0.074 0.926 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.018 0.982 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.434 -7.182 -12.474 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.060 3.940 4 H 0.098 0.902 5 O -0.370 6.370 6 C -0.107 4.107 7 N -0.252 5.252 8 C -0.062 4.062 9 C -0.070 4.070 10 N -0.261 5.261 11 C -0.026 4.026 12 C -0.017 4.017 13 C -0.482 4.482 14 H 0.042 0.958 15 C -0.170 4.170 16 N -0.597 5.597 17 Si 0.752 3.248 18 H -0.205 1.205 19 H -0.231 1.231 20 H -0.149 1.149 21 C -0.203 4.203 22 C -0.229 4.229 23 C -0.060 4.060 24 C -0.064 4.064 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.230 0.770 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.037 0.963 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.735 -6.797 -11.893 20.119 hybrid contribution 0.452 0.147 0.757 0.894 sum -14.283 -6.650 -11.136 19.294 Atomic orbital electron populations 1.21673 0.95023 1.01825 1.01866 1.22167 0.97109 0.96018 1.03505 1.21817 0.91446 0.93008 0.87685 0.90154 1.86573 1.76460 1.58018 1.15903 1.22945 0.97206 0.88668 1.01832 1.62163 1.16030 1.16762 1.30211 1.22066 1.00412 0.93704 0.89976 1.22107 0.88151 0.96826 0.99875 1.61821 1.15208 1.17087 1.31981 1.21620 0.94676 0.88212 0.98138 1.19284 0.90441 0.97739 0.94254 1.20188 1.27515 1.11036 0.89424 0.95809 1.25549 0.96137 0.99539 0.95795 1.70069 1.50522 1.39832 0.99245 0.86098 0.78496 0.81976 0.78180 1.20540 1.23058 1.14934 1.22828 1.01993 1.01173 0.94279 1.23092 1.02881 0.91893 1.05041 1.22080 1.00673 0.94076 0.89125 1.22138 0.87413 0.96164 1.00649 0.92596 0.91864 0.93395 0.90260 0.90865 0.76963 0.89040 0.94330 0.96099 0.89240 0.92162 0.94088 0.93622 0.94656 0.93226 0.90701 0.88328 0.88949 0.90704 0.94404 0.90730 0.96315 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 71.98 0.71 -1.33 16 2 C -0.15 -2.06 5.61 30.59 0.17 -1.88 16 3 C 0.12 2.21 3.01 30.59 0.09 2.30 16 4 H 0.08 1.71 6.87 -2.39 -0.02 1.69 16 5 O -0.56 -11.28 12.73 -148.98 -1.90 -13.17 16 6 C 0.02 0.45 4.66 86.30 0.40 0.85 16 7 N -0.53 -14.33 4.50 -895.70 -4.03 -18.37 16 8 C 0.07 2.06 5.43 86.31 0.47 2.53 16 9 C 0.06 2.05 5.58 86.31 0.48 2.54 16 10 N -0.54 -21.43 4.35 -895.71 -3.90 -25.32 16 11 C 0.10 4.16 4.46 86.31 0.38 4.55 16 12 C -0.02 -0.72 0.62 -52.93 -0.03 -0.75 16 13 C -0.44 -25.21 9.09 25.60 0.23 -24.98 16 14 H 0.02 1.53 8.06 -2.91 -0.02 1.51 16 15 C 0.03 1.51 5.46 84.65 0.46 1.97 16 16 N -0.96 -60.96 13.96 21.44 0.30 -60.66 16 17 Si 0.93 45.14 24.84 68.60 1.70 46.84 16 18 H -0.28 -13.32 7.06 99.48 0.70 -12.62 16 19 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 20 H -0.23 -9.93 5.85 99.48 0.58 -9.35 16 21 C -0.17 -6.32 8.39 30.62 0.26 -6.06 16 22 C -0.19 -7.61 8.28 30.62 0.25 -7.36 16 23 C 0.07 2.32 5.37 86.31 0.46 2.79 16 24 C 0.06 1.91 5.57 86.31 0.48 2.39 16 25 H 0.05 0.84 7.82 -2.39 -0.02 0.82 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.38 5.03 9.05 -74.05 -0.67 4.36 16 31 H 0.09 1.57 7.85 -2.39 -0.02 1.55 16 32 H 0.04 0.86 8.00 -2.39 -0.02 0.84 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.09 2.40 6.78 -2.38 -0.02 2.38 16 35 H 0.06 2.22 8.02 -2.39 -0.02 2.20 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.99 4.65 -2.39 -0.01 1.97 16 38 H 0.04 1.29 7.99 -2.38 -0.02 1.27 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.10 3.18 8.05 -2.39 -0.02 3.16 16 42 H 0.09 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 2.69 6.12 -2.39 -0.01 2.68 16 46 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 47 H 0.10 2.34 8.00 -2.38 -0.02 2.32 16 Total: -1.00 -68.47 356.89 -2.88 -71.34 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.12 Total: 21.77 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 4.82 Total: -22.43 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -7.63 Total: -104.35 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.90 Total: -13.17 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.70 Total: 46.84 kcal Total: -68.47 -2.88 -71.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602785461.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.429 kcal (2) G-P(sol) polarization free energy of solvation -68.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds