Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.53001 * 109.46644 * 239.99958 * 2 1 3 5 5 O 1.42897 * 109.47209 * 60.00271 * 4 2 1 6 6 N 1.46903 * 109.47132 * 120.00356 * 2 1 3 7 7 C 1.46955 * 110.99884 * 299.99792 * 6 2 1 8 8 C 1.53051 * 109.36481 * 183.18946 * 7 6 2 9 9 N 1.46952 * 109.36256 * 301.59677 * 8 7 6 10 10 C 1.46903 * 110.99696 * 183.18475 * 9 8 7 11 11 C 1.53003 * 109.47021 * 160.86208 * 10 9 8 12 12 C 1.50707 * 115.54649 * 60.49312 * 11 10 9 13 13 H 1.07996 * 119.99924 * 232.83183 * 12 11 10 14 14 C 1.37883 * 119.99857 * 52.83772 * 12 11 10 15 15 N 1.31520 * 119.99743 * 5.88242 * 14 12 11 16 16 Si 1.86791 * 119.99997 * 186.16073 * 14 12 11 17 17 H 1.48503 * 109.47579 * 59.99697 * 16 14 12 18 18 H 1.48501 * 109.47389 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.47161 * 299.99763 * 16 14 12 20 20 C 1.52998 * 117.50177 * 206.16370 * 11 10 9 21 21 C 1.53000 * 117.50282 * 274.82567 * 11 10 9 22 22 C 1.46955 * 110.87958 * 59.32192 * 9 8 7 23 23 C 1.46952 * 110.99985 * 63.79545 * 6 2 1 24 24 H 1.09005 * 109.46837 * 300.00151 * 1 2 3 25 25 H 1.09000 * 109.47390 * 59.99873 * 1 2 3 26 26 H 1.08996 * 109.47500 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46699 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47157 * 300.00269 * 3 2 1 29 29 H 1.08998 * 109.47042 * 60.00759 * 3 2 1 30 30 H 1.09004 * 109.46883 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47137 * 300.00179 * 4 2 1 32 32 H 0.96700 * 114.00363 * 179.97438 * 5 4 2 33 33 H 1.09003 * 109.49083 * 63.22220 * 7 6 2 34 34 H 1.09010 * 109.50604 * 303.17068 * 7 6 2 35 35 H 1.09004 * 109.48919 * 181.62683 * 8 7 6 36 36 H 1.09002 * 109.50642 * 61.58027 * 8 7 6 37 37 H 1.08998 * 109.46829 * 40.86723 * 10 9 8 38 38 H 1.08994 * 109.47184 * 280.86321 * 10 9 8 39 39 H 0.96999 * 119.99800 * 185.06256 * 15 14 12 40 40 H 1.08999 * 117.50125 * 215.00806 * 20 11 10 41 41 H 1.09005 * 117.49510 * 0.02562 * 20 11 10 42 42 H 1.09000 * 117.49465 * 359.97438 * 21 11 10 43 43 H 1.08992 * 117.49885 * 144.97008 * 21 11 10 44 44 H 1.09003 * 109.49083 * 60.64401 * 22 9 8 45 45 H 1.09002 * 109.49193 * 180.70940 * 22 9 8 46 46 H 1.09003 * 109.49165 * 296.77982 * 23 6 2 47 47 H 1.09001 * 109.48952 * 56.82362 * 23 6 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 1.5636 -0.0476 -2.4160 6 7 2.0197 -0.6926 1.1994 7 6 1.5485 -0.0262 2.4215 8 6 2.1436 -0.7287 3.6442 9 7 1.7480 -2.1439 3.6335 10 6 2.2377 -2.8365 4.8329 11 6 1.4404 -4.1260 5.0386 12 6 1.5256 -5.1287 3.9168 13 1 0.6224 -5.5220 3.4742 14 6 2.7568 -5.5442 3.4555 15 7 3.8538 -5.1559 4.0684 16 14 2.8671 -6.6520 1.9557 17 1 2.2592 -5.9657 0.7874 18 1 4.2921 -6.9538 1.6668 19 1 2.1374 -7.9181 2.2207 20 6 1.3308 -4.6691 6.4647 21 6 0.1147 -4.0238 5.7955 22 6 2.2191 -2.8103 2.4114 23 6 1.6241 -2.1078 1.1887 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1300 -0.7217 -1.2491 31 1 1.6765 -1.7489 -1.2493 32 1 1.8492 -0.4509 -3.2472 33 1 0.4606 -0.0766 2.4669 34 1 1.8642 1.0171 2.4120 35 1 1.7725 -0.2542 4.5527 36 1 3.2307 -0.6546 3.6133 37 1 2.1136 -2.1901 5.7018 38 1 3.2932 -3.0780 4.7075 39 1 4.7217 -5.3869 3.7020 40 1 1.3204 -5.7516 6.5917 41 1 1.8264 -4.1074 7.2566 42 1 -0.1892 -3.0380 6.1474 43 1 -0.6959 -4.6815 5.4819 44 1 3.3071 -2.7599 2.3660 45 1 1.9032 -3.8535 2.4210 46 1 0.5370 -2.1818 1.2201 47 1 1.9948 -2.5822 0.2801 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602790599.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = -0.594811 kcal Electronic energy + Delta-G solvation = -24464.052612 eV Core-core repulsion = 21262.192704 eV Total energy + Delta-G solvation = -3201.859908 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.66869 -37.55661 -36.31356 -34.69160 -32.27099 -31.27407 -30.38470 -27.20901 -26.69406 -26.31583 -25.57680 -23.06536 -22.39593 -21.03647 -19.69431 -18.97608 -18.33416 -17.62130 -16.14708 -15.32461 -15.05022 -14.84985 -14.70248 -14.33563 -14.21040 -13.93247 -13.75010 -13.43165 -13.00270 -12.67431 -12.50490 -12.37966 -11.93315 -11.86789 -11.61716 -11.33022 -11.13350 -11.09780 -10.99677 -10.75045 -10.54513 -10.46131 -10.39632 -10.16300 -10.09015 -9.82844 -9.75303 -9.30095 -8.86816 -8.51881 -8.00146 -7.94136 -7.16816 -6.07448 -4.05392 3.23591 3.30582 3.32641 3.85219 4.32518 4.54701 4.79798 4.95833 4.99611 5.14081 5.25226 5.39735 5.53119 5.60466 5.63978 5.68781 5.78541 5.82493 5.84747 5.98454 5.99784 6.04779 6.10401 6.13292 6.18839 6.29141 6.37018 6.43676 6.46512 6.51246 6.68529 6.79265 6.83014 6.92533 7.04934 7.23075 7.30556 7.42091 7.46078 7.50788 7.54325 7.59639 7.86132 8.23926 8.28864 8.48675 8.87382 9.46128 10.96441 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017960 B = 0.006009 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.628631 B = 4658.841067 C = 5619.001193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.107 3.893 3 C -0.132 4.132 4 C 0.086 3.914 5 O -0.572 6.572 6 N -0.527 5.527 7 C 0.061 3.939 8 C 0.054 3.946 9 N -0.522 5.522 10 C 0.096 3.904 11 C 0.063 3.937 12 C -0.476 4.476 13 H 0.060 0.940 14 C 0.071 3.929 15 N -0.875 5.875 16 Si 0.876 3.124 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.276 1.276 20 C -0.193 4.193 21 C -0.200 4.200 22 C 0.044 3.956 23 C 0.049 3.951 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.377 0.623 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.029 0.971 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.261 0.739 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.025 0.975 45 H 0.137 0.863 46 H 0.041 0.959 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 9.789 -7.821 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.017 3.983 3 C -0.190 4.190 4 C 0.008 3.992 5 O -0.377 6.377 6 N -0.253 5.253 7 C -0.067 4.067 8 C -0.075 4.075 9 N -0.247 5.247 10 C -0.031 4.031 11 C 0.062 3.938 12 C -0.514 4.514 13 H 0.078 0.922 14 C -0.132 4.132 15 N -0.512 5.512 16 Si 0.703 3.297 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.232 4.232 21 C -0.237 4.237 22 C -0.083 4.083 23 C -0.079 4.079 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.223 0.777 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.043 0.957 45 H 0.154 0.846 46 H 0.059 0.941 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.433 10.111 -7.342 12.730 hybrid contribution 0.443 -0.974 -1.101 1.535 sum -1.990 9.137 -8.442 12.598 Atomic orbital electron populations 1.22372 0.96592 1.02239 1.02067 1.20911 0.93097 0.94612 0.89661 1.21795 1.01311 0.94334 1.01517 1.22200 0.97756 0.94562 0.84691 1.86399 1.77660 1.57587 1.16019 1.62399 1.59198 1.02946 1.00798 1.22159 0.98101 0.97225 0.89170 1.22120 0.97669 0.91393 0.96278 1.62018 1.59628 0.99769 1.03255 1.21566 0.99996 0.92734 0.88826 1.18772 0.91862 0.93351 0.89830 1.20411 0.92045 1.22255 1.16640 0.92231 1.24935 0.95862 0.95639 0.96753 1.69936 0.97476 1.46099 1.37664 0.86921 0.77260 0.81672 0.83846 1.19763 1.21122 1.20094 1.22846 1.02499 0.98844 0.98994 1.22771 0.92826 0.99580 1.08518 1.22886 0.96705 1.02230 0.86465 1.22446 0.98804 0.87130 0.99475 0.92483 0.91798 0.92459 0.92308 0.91878 0.92711 0.92953 0.93312 0.77663 0.93992 0.91094 0.91632 0.95260 0.95056 0.91201 0.92855 0.90583 0.92075 0.91631 0.91049 0.95680 0.84616 0.94065 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 7.63 37.16 0.28 -2.08 16 2 C 0.11 1.48 0.54 -131.60 -0.07 1.41 16 3 C -0.13 -1.65 8.10 37.16 0.30 -1.35 16 4 C 0.09 1.10 5.56 37.16 0.21 1.31 16 5 O -0.57 -6.50 12.31 -35.23 -0.43 -6.93 16 6 N -0.53 -8.48 4.53 -218.81 -0.99 -9.47 16 7 C 0.06 0.96 4.82 -3.77 -0.02 0.94 16 8 C 0.05 0.97 5.57 -3.77 -0.02 0.95 16 9 N -0.52 -10.98 4.64 -234.46 -1.09 -12.06 16 10 C 0.10 2.21 4.77 -3.82 -0.02 2.19 16 11 C 0.06 1.51 1.77 -155.66 -0.28 1.24 16 12 C -0.48 -12.26 6.53 -34.43 -0.22 -12.49 16 13 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 14 C 0.07 1.82 3.66 -17.82 -0.07 1.75 16 15 N -0.87 -23.32 11.48 55.43 0.64 -22.69 16 16 Si 0.88 19.95 29.03 -169.99 -4.94 15.01 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 C -0.19 -4.44 9.95 -26.69 -0.27 -4.70 16 21 C -0.20 -4.39 9.95 -26.69 -0.27 -4.66 16 22 C 0.04 0.95 4.74 -3.77 -0.02 0.93 16 23 C 0.05 0.88 4.83 -3.77 -0.02 0.87 16 24 H 0.06 0.77 6.48 -51.93 -0.34 0.43 16 25 H 0.06 0.83 7.68 -51.93 -0.40 0.44 16 26 H 0.06 0.83 6.56 -51.93 -0.34 0.49 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 29 H 0.05 0.65 6.34 -51.93 -0.33 0.32 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.64 6.28 -51.93 -0.33 0.32 16 32 H 0.38 2.61 9.12 45.56 0.42 3.03 16 33 H 0.04 0.68 6.48 -51.93 -0.34 0.34 16 34 H 0.07 0.98 6.14 -51.92 -0.32 0.66 16 35 H 0.07 1.09 8.00 -51.93 -0.42 0.67 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.03 0.68 7.82 -51.93 -0.41 0.27 16 38 H 0.07 1.79 6.19 -51.93 -0.32 1.47 16 39 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 40 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.14 3.25 3.23 -51.93 -0.17 3.09 16 46 H 0.04 0.77 6.57 -51.93 -0.34 0.42 16 47 H 0.07 1.14 6.06 -51.93 -0.31 0.82 16 LS Contribution 343.63 15.07 5.18 5.18 Total: -1.00 -27.03 343.63 -9.37 -36.39 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.26 Total: 8.25 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.47 Total: -13.69 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -1.44 Total: -44.22 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.43 Total: -6.93 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.94 Total: 15.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -27.03 -9.37 -36.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602790599.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.798 kcal (2) G-P(sol) polarization free energy of solvation -27.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds