Wall clock time and date at job start Tue Mar 31 2020 05:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 H 1.09005 * 109.69893 * 59.31000 * 3 2 1 5 5 C 1.52760 * 109.51148 * 299.18803 * 3 2 1 6 6 C 1.53033 * 109.38173 * 185.70451 * 5 3 2 7 7 C 1.53040 * 109.53903 * 61.24367 * 6 5 3 8 8 C 1.53198 * 109.31058 * 298.63438 * 7 6 5 9 9 N 1.46921 * 108.77488 * 54.63250 * 8 7 6 10 10 C 1.34774 * 120.62821 * 126.37042 * 9 8 7 11 11 O 1.21280 * 120.00145 * 185.96789 * 10 9 8 12 12 C 1.50701 * 120.00297 * 5.96773 * 10 9 8 13 13 H 1.08999 * 109.47175 * 44.64809 * 12 10 9 14 14 C 1.52999 * 109.47076 * 284.64910 * 12 10 9 15 15 N 1.46896 * 109.47538 * 164.64787 * 12 10 9 16 16 C 1.46893 * 111.00246 * 208.60308 * 15 12 10 17 17 H 1.08998 * 109.47185 * 328.86978 * 16 15 12 18 18 C 1.53002 * 109.47141 * 208.87250 * 16 15 12 19 19 C 1.50697 * 109.47299 * 88.87200 * 16 15 12 20 20 H 1.07999 * 119.99872 * 359.97438 * 19 16 15 21 21 C 1.37876 * 120.00493 * 180.02562 * 19 16 15 22 22 N 1.31516 * 119.99390 * 359.97438 * 21 19 16 23 23 Si 1.86801 * 120.00451 * 179.97438 * 21 19 16 24 24 H 1.48495 * 109.46886 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47020 * 120.00033 * 23 21 19 26 26 H 1.48498 * 109.47147 * 239.99973 * 23 21 19 27 27 H 1.08999 * 109.47494 * 305.27681 * 1 2 3 28 28 H 1.09006 * 109.47449 * 65.27716 * 1 2 3 29 29 H 1.09000 * 109.47368 * 185.27447 * 1 2 3 30 30 H 1.09001 * 109.46962 * 240.00022 * 2 1 3 31 31 H 1.08997 * 109.47081 * 120.00348 * 2 1 3 32 32 H 1.09004 * 109.56192 * 65.67584 * 5 3 2 33 33 H 1.08993 * 109.36240 * 305.61638 * 5 3 2 34 34 H 1.09001 * 109.46433 * 301.22462 * 6 5 3 35 35 H 1.08997 * 109.45217 * 181.25641 * 6 5 3 36 36 H 1.09001 * 109.49956 * 178.68269 * 7 6 5 37 37 H 1.08998 * 109.49741 * 58.58287 * 7 6 5 38 38 H 1.09004 * 109.58152 * 294.84470 * 8 7 6 39 39 H 1.09000 * 109.58274 * 174.42411 * 8 7 6 40 40 H 1.09001 * 109.47418 * 304.65616 * 14 12 10 41 41 H 1.08999 * 109.47120 * 64.65493 * 14 12 10 42 42 H 1.08995 * 109.47279 * 184.65616 * 14 12 10 43 43 H 1.00906 * 110.99517 * 332.55828 * 15 12 10 44 44 H 1.08997 * 109.47584 * 54.63769 * 18 16 15 45 45 H 1.08997 * 109.47217 * 174.64135 * 18 16 15 46 46 H 1.09009 * 109.47014 * 294.63718 * 18 16 15 47 47 H 0.97003 * 119.99421 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6686 1.9635 0.8825 5 6 1.5480 2.1576 -1.2570 6 6 2.1744 3.5521 -1.3261 7 6 3.6975 3.4257 -1.4051 8 6 4.2139 2.7256 -0.1441 9 7 3.5092 1.4455 0.0082 10 6 4.1974 0.2951 0.1472 11 8 3.6092 -0.7654 0.1634 12 6 5.6980 0.3263 0.2825 13 1 5.9833 1.1107 0.9836 14 6 6.3274 0.6093 -1.0830 15 7 6.1720 -0.9718 0.7806 16 6 7.4160 -0.8193 1.5468 17 1 7.9880 0.0185 1.1481 18 6 8.2440 -2.1011 1.4354 19 6 7.0859 -0.5587 2.9939 20 1 6.0551 -0.5107 3.3125 21 6 8.0998 -0.3806 3.9111 22 7 9.3551 -0.4385 3.5230 23 14 7.6906 -0.0569 5.7048 24 1 6.2163 -0.0405 5.8809 25 1 8.2776 -1.1294 6.5477 26 1 8.2529 1.2560 6.1116 27 1 -0.3634 0.5935 0.8389 28 1 -0.3634 0.4298 -0.9335 29 1 -0.3634 -1.0233 0.0945 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.4622 2.2478 -1.2243 33 1 1.8396 1.5839 -2.1367 34 1 1.9028 4.1169 -0.4342 35 1 1.8068 4.0718 -2.2109 36 1 4.1417 4.4184 -1.4778 37 1 3.9689 2.8400 -2.2834 38 1 4.0234 3.3535 0.7263 39 1 5.2845 2.5444 -0.2393 40 1 5.9762 -0.1281 -1.8049 41 1 6.0417 1.6074 -1.4150 42 1 7.4128 0.5502 -1.0021 43 1 5.4613 -1.4288 1.3321 44 1 8.4019 -2.3414 0.3840 45 1 9.2075 -1.9548 1.9234 46 1 7.7122 -2.9204 1.9195 47 1 10.0684 -0.3128 4.1683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861615.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:43 Heat of formation + Delta-G solvation = -36.100062 kcal Electronic energy + Delta-G solvation = -24045.526901 eV Core-core repulsion = 20842.127369 eV Total energy + Delta-G solvation = -3203.399531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52107 -37.53184 -35.89766 -34.29296 -32.95165 -32.52172 -30.36012 -29.40036 -27.14885 -25.63726 -25.03127 -24.16872 -22.76911 -21.19368 -20.76341 -19.81583 -18.55696 -16.85628 -16.39413 -15.91547 -15.24418 -14.81884 -14.67180 -14.53359 -14.44936 -13.88530 -13.66442 -13.25821 -13.14994 -12.78988 -12.71548 -12.14976 -12.04920 -11.87653 -11.82269 -11.67970 -11.26181 -11.17461 -11.11109 -11.02401 -10.94894 -10.80860 -10.71507 -10.50734 -10.48052 -10.25175 -10.04834 -9.93781 -9.05349 -8.61580 -8.41504 -8.35358 -7.29582 -6.01358 -4.13039 3.01565 3.14406 3.25236 3.33968 3.38184 4.39186 4.56465 4.68364 4.72334 4.92397 5.02854 5.17965 5.19791 5.23372 5.29065 5.32823 5.43276 5.50721 5.62729 5.64454 5.73119 5.77867 5.79367 5.81225 5.90993 5.92178 5.93338 6.12902 6.15153 6.19765 6.38126 6.45508 6.54063 6.66751 6.87894 6.91437 7.18385 7.32768 7.47942 7.64372 7.75974 8.08538 8.15960 8.30153 8.54854 8.69362 9.00522 9.54917 11.00211 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.004717 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.506946 B = 5935.158669 C = 6065.859959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.147 3.853 4 H 0.065 0.935 5 C -0.131 4.131 6 C -0.119 4.119 7 C -0.135 4.135 8 C 0.099 3.901 9 N -0.613 5.613 10 C 0.518 3.482 11 O -0.525 6.525 12 C 0.072 3.928 13 H 0.068 0.932 14 C -0.134 4.134 15 N -0.672 5.672 16 C 0.207 3.793 17 H 0.032 0.968 18 C -0.121 4.121 19 C -0.545 4.545 20 H 0.053 0.947 21 C 0.068 3.932 22 N -0.885 5.885 23 Si 0.888 3.112 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.341 0.659 44 H 0.014 0.986 45 H 0.078 0.922 46 H 0.026 0.974 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.961 8.943 -9.856 18.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.149 4.149 3 C 0.044 3.956 4 H 0.083 0.917 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.173 4.173 8 C -0.024 4.024 9 N -0.348 5.348 10 C 0.307 3.693 11 O -0.400 6.400 12 C -0.042 4.042 13 H 0.086 0.914 14 C -0.192 4.192 15 N -0.306 5.306 16 C 0.100 3.900 17 H 0.050 0.950 18 C -0.180 4.180 19 C -0.584 4.584 20 H 0.071 0.929 21 C -0.134 4.134 22 N -0.524 5.524 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.210 1.210 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.161 0.839 44 H 0.033 0.967 45 H 0.097 0.903 46 H 0.045 0.955 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.754 8.204 -10.351 18.360 hybrid contribution -0.468 0.798 1.962 2.169 sum -13.222 9.002 -8.388 18.061 Atomic orbital electron populations 1.21994 0.97309 1.01484 1.00919 1.22062 0.93237 0.94229 1.05374 1.21207 0.79494 0.97693 0.97173 0.91681 1.21963 1.00315 0.96102 0.98589 1.21517 0.95364 0.96943 1.01882 1.21923 0.96147 1.00813 0.98424 1.21902 0.98144 0.84684 0.97628 1.48149 1.05964 1.07074 1.73638 1.21142 0.90427 0.82995 0.74755 1.90685 1.69557 1.30406 1.49398 1.21412 0.88855 0.95883 0.98026 0.91413 1.21824 1.01962 0.99873 0.95549 1.60924 1.08406 1.16541 1.44698 1.19234 0.85906 0.94732 0.90161 0.94983 1.21650 1.01813 0.97550 0.96970 1.21883 0.92697 1.49546 0.94252 0.92904 1.24917 0.95019 0.94869 0.98616 1.69910 0.98622 1.49590 1.34254 0.86605 0.78488 0.77849 0.85460 1.19946 1.20878 1.21024 0.93297 0.93207 0.92720 0.90678 0.89485 0.90916 0.91569 0.91905 0.91910 0.90774 0.91398 0.91573 0.88493 0.92342 0.92972 0.91266 0.83933 0.96682 0.90346 0.95498 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.43 37.16 0.35 -1.39 16 2 C -0.11 -1.55 3.85 -26.73 -0.10 -1.66 16 3 C 0.15 1.85 2.99 -67.82 -0.20 1.65 16 4 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 5 C -0.13 -1.31 4.85 -26.84 -0.13 -1.44 16 6 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 7 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 8 C 0.10 1.15 5.76 -3.71 -0.02 1.13 16 9 N -0.61 -8.72 2.98 -165.47 -0.49 -9.21 16 10 C 0.52 9.20 6.80 -10.99 -0.07 9.12 16 11 O -0.52 -10.52 11.26 5.56 0.06 -10.46 16 12 C 0.07 1.36 1.96 -68.87 -0.14 1.22 16 13 H 0.07 1.35 6.96 -51.93 -0.36 0.99 16 14 C -0.13 -2.15 9.10 37.16 0.34 -1.81 16 15 N -0.67 -15.02 5.91 -102.18 -0.60 -15.62 16 16 C 0.21 5.22 2.38 -68.87 -0.16 5.06 16 17 H 0.03 0.86 7.37 -51.93 -0.38 0.47 16 18 C -0.12 -3.04 9.21 37.16 0.34 -2.70 16 19 C -0.54 -14.85 8.47 -34.44 -0.29 -15.14 16 20 H 0.05 1.47 7.68 -52.49 -0.40 1.06 16 21 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 22 N -0.89 -24.96 11.38 55.43 0.63 -24.33 16 23 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.48 6.88 -51.93 -0.36 0.12 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.19 7.05 -51.93 -0.37 0.82 16 31 H 0.09 1.47 6.43 -51.93 -0.33 1.14 16 32 H 0.07 0.63 6.89 -51.93 -0.36 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 1.16 4.19 -51.93 -0.22 0.95 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.67 5.90 -51.93 -0.31 0.37 16 42 H 0.07 1.17 7.74 -51.93 -0.40 0.77 16 43 H 0.34 8.10 7.18 -39.29 -0.28 7.81 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 2.10 6.23 -51.93 -0.32 1.78 16 46 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 47 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -29.15 350.98 -8.94 -38.09 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.30 Total: 6.77 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -0.51 Total: -6.76 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.47 Total: -49.16 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.46 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.15 -8.94 -38.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861615.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.994 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds