Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47229 * 2 1 4 4 H 1.08997 * 109.70278 * 56.75880 * 3 2 1 5 5 C 1.52760 * 109.51387 * 296.63685 * 3 2 1 6 6 C 1.53035 * 109.38550 * 185.70882 * 5 3 2 7 7 C 1.53044 * 109.54374 * 61.23679 * 6 5 3 8 8 C 1.53189 * 109.31034 * 298.63754 * 7 6 5 9 9 N 1.46927 * 108.77813 * 54.63380 * 8 7 6 10 10 C 1.34771 * 120.63631 * 126.36581 * 9 8 7 11 11 O 1.21279 * 120.00662 * 183.74372 * 10 9 8 12 12 C 1.50709 * 119.99819 * 3.74206 * 10 9 8 13 13 H 1.09003 * 109.46790 * 309.35634 * 12 10 9 14 14 C 1.53005 * 109.46723 * 69.35056 * 12 10 9 15 15 N 1.46894 * 109.47043 * 189.35259 * 12 10 9 16 16 C 1.46898 * 110.99952 * 155.00543 * 15 12 10 17 17 H 1.08999 * 109.47190 * 34.99245 * 16 15 12 18 18 C 1.53003 * 109.46622 * 274.99655 * 16 15 12 19 19 C 1.50697 * 109.47665 * 154.99843 * 16 15 12 20 20 H 1.07997 * 119.99541 * 359.97438 * 19 16 15 21 21 C 1.37877 * 120.00441 * 179.97438 * 19 16 15 22 22 N 1.31517 * 119.99800 * 359.97438 * 21 19 16 23 23 Si 1.86802 * 120.00031 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46532 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47012 * 299.99683 * 23 21 19 26 26 H 1.48493 * 109.47220 * 59.99976 * 23 21 19 27 27 H 1.08998 * 109.47321 * 67.42685 * 1 2 3 28 28 H 1.08999 * 109.47139 * 187.43207 * 1 2 3 29 29 H 1.09005 * 109.46660 * 307.42387 * 1 2 3 30 30 H 1.09008 * 109.46750 * 240.00073 * 2 1 3 31 31 H 1.09004 * 109.47243 * 120.00729 * 2 1 3 32 32 H 1.08995 * 109.56455 * 65.66550 * 5 3 2 33 33 H 1.09004 * 109.35496 * 305.61667 * 5 3 2 34 34 H 1.08999 * 109.46070 * 301.21322 * 6 5 3 35 35 H 1.09004 * 109.45107 * 181.25623 * 6 5 3 36 36 H 1.08995 * 109.49956 * 178.68582 * 7 6 5 37 37 H 1.09005 * 109.49036 * 58.58918 * 7 6 5 38 38 H 1.09002 * 109.58781 * 294.84525 * 8 7 6 39 39 H 1.08997 * 109.70405 * 174.48694 * 8 7 6 40 40 H 1.08998 * 109.47082 * 302.91012 * 14 12 10 41 41 H 1.08994 * 109.47118 * 62.91538 * 14 12 10 42 42 H 1.08997 * 109.46712 * 182.91394 * 14 12 10 43 43 H 1.00901 * 110.99743 * 278.95122 * 15 12 10 44 44 H 1.08994 * 109.47446 * 299.99514 * 18 16 15 45 45 H 1.08994 * 109.47251 * 60.00008 * 18 16 15 46 46 H 1.09004 * 109.47165 * 179.97438 * 18 16 15 47 47 H 0.96995 * 119.99978 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6322 1.9764 0.8582 5 6 1.6015 2.1387 -1.2870 6 6 2.2308 3.5322 -1.3505 7 6 3.7559 3.4051 -1.3636 8 6 4.2186 2.7240 -0.0718 9 7 3.5077 1.4460 0.0699 10 6 4.1890 0.2979 0.2547 11 8 3.5955 -0.7587 0.3023 12 6 5.6886 0.3270 0.4022 13 1 6.1229 0.9026 -0.4153 14 6 6.0571 0.9785 1.7367 15 7 6.2108 -1.0455 0.3665 16 6 7.6095 -1.0650 -0.0822 17 1 8.1224 -0.1776 0.2887 18 6 7.6542 -1.0782 -1.6115 19 6 8.2910 -2.2988 0.4509 20 1 7.7403 -2.9983 1.0623 21 6 9.6175 -2.5347 0.1582 22 7 10.2880 -1.6831 -0.5867 23 14 10.4624 -4.0638 0.8197 24 1 11.8759 -4.0841 0.3649 25 1 10.4195 -4.0500 2.3040 26 1 9.7633 -5.2729 0.3154 27 1 -0.3634 0.3945 -0.9489 28 1 -0.3633 -1.0190 0.1329 29 1 -0.3633 0.6246 0.8162 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 0.5154 2.2289 -1.3014 33 1 1.9296 1.5519 -2.1451 34 1 1.9221 4.1101 -0.4794 35 1 1.9008 4.0386 -2.2576 36 1 4.2031 4.3967 -1.4323 37 1 4.0636 2.8064 -2.2210 38 1 3.9919 3.3646 0.7805 39 1 5.2923 2.5418 -0.1166 40 1 5.6256 1.9783 1.7844 41 1 5.6666 0.3748 2.5558 42 1 7.1417 1.0465 1.8205 43 1 6.1133 -1.4929 1.2656 44 1 7.1413 -1.9655 -1.9824 45 1 7.1614 -0.1858 -1.9971 46 1 8.6921 -1.0922 -1.9445 47 1 11.2211 -1.8492 -0.7930 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -33.565519 kcal Electronic energy + Delta-G solvation = -23885.659467 eV Core-core repulsion = 20682.369841 eV Total energy + Delta-G solvation = -3203.289625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46337 -37.48221 -36.05115 -34.25880 -32.99908 -32.55510 -30.21309 -29.42698 -26.94404 -25.69294 -25.14251 -24.14851 -23.11607 -21.22173 -20.74661 -19.63134 -18.75115 -16.89408 -16.20100 -15.71572 -15.38272 -14.81639 -14.60232 -14.56131 -14.22525 -13.86655 -13.61800 -13.36295 -13.05214 -13.01238 -12.64554 -12.35113 -12.26543 -12.06613 -11.87863 -11.54554 -11.47559 -11.24293 -11.03401 -10.96398 -10.87400 -10.71625 -10.69889 -10.54783 -10.43914 -10.39685 -10.11259 -9.95278 -8.87540 -8.59838 -8.43601 -8.31511 -7.21165 -6.02114 -4.07763 3.07824 3.15704 3.33094 3.37025 3.41076 4.41424 4.56698 4.67953 4.72311 4.91816 5.02778 5.18046 5.20739 5.24781 5.30884 5.33973 5.42451 5.46904 5.52354 5.58527 5.63401 5.65961 5.76233 5.78631 5.82418 5.92226 5.96506 6.01806 6.15050 6.17916 6.19423 6.41948 6.47749 6.54872 6.85203 6.91727 7.13646 7.21627 7.46447 7.67681 7.80528 7.89551 8.27203 8.40141 8.63314 8.72307 9.02596 9.58030 11.04345 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026296 B = 0.004110 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.537355 B = 6811.643562 C = 7322.948879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C 0.150 3.850 4 H 0.064 0.936 5 C -0.133 4.133 6 C -0.118 4.118 7 C -0.137 4.137 8 C 0.106 3.894 9 N -0.618 5.618 10 C 0.523 3.477 11 O -0.512 6.512 12 C 0.069 3.931 13 H 0.092 0.908 14 C -0.176 4.176 15 N -0.665 5.665 16 C 0.214 3.786 17 H 0.003 0.997 18 C -0.125 4.125 19 C -0.516 4.516 20 H 0.060 0.940 21 C 0.063 3.937 22 N -0.891 5.891 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.276 1.276 27 H 0.048 0.952 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.338 0.662 44 H 0.032 0.968 45 H 0.001 0.999 46 H 0.081 0.919 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.089 12.734 0.578 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.153 4.153 3 C 0.047 3.953 4 H 0.082 0.918 5 C -0.171 4.171 6 C -0.156 4.156 7 C -0.176 4.176 8 C -0.017 4.017 9 N -0.354 5.354 10 C 0.311 3.689 11 O -0.386 6.386 12 C -0.046 4.046 13 H 0.110 0.890 14 C -0.236 4.236 15 N -0.297 5.297 16 C 0.107 3.893 17 H 0.021 0.979 18 C -0.183 4.183 19 C -0.555 4.555 20 H 0.078 0.922 21 C -0.139 4.139 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.213 1.213 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.157 0.843 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.100 0.900 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.444 12.011 -0.101 19.565 hybrid contribution 0.990 -0.220 0.959 1.395 sum -14.454 11.791 0.857 18.673 Atomic orbital electron populations 1.21987 0.97398 1.01425 1.00839 1.22145 0.93175 0.94282 1.05677 1.21181 0.79668 0.97688 0.96800 0.91839 1.21976 1.00412 0.96208 0.98550 1.21506 0.95320 0.96953 1.01813 1.21942 0.96254 1.00929 0.98453 1.21780 0.97675 0.84934 0.97291 1.48222 1.06058 1.07301 1.73824 1.21017 0.90058 0.82777 0.75060 1.90664 1.68847 1.30438 1.48685 1.21466 0.91068 0.94169 0.97884 0.88972 1.22503 1.03016 1.00446 0.97616 1.60444 1.23490 1.11628 1.34092 1.19133 0.81238 0.96225 0.92718 0.97942 1.21743 1.02070 0.96733 0.97776 1.21206 0.95293 1.07261 1.31743 0.92182 1.24897 0.97261 0.96683 0.95068 1.69882 1.09659 1.35976 1.37495 0.86574 0.78276 0.83444 0.79197 1.21339 1.20327 1.20170 0.93300 0.92736 0.93378 0.90947 0.88832 0.90982 0.91482 0.92009 0.91914 0.90838 0.91270 0.91741 0.89183 0.92598 0.92331 0.91047 0.84282 0.94849 0.98016 0.90012 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.44 37.16 0.35 -1.35 16 2 C -0.12 -1.58 3.84 -26.74 -0.10 -1.69 16 3 C 0.15 1.80 2.96 -67.82 -0.20 1.60 16 4 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 5 C -0.13 -1.34 4.92 -26.84 -0.13 -1.47 16 6 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 7 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 8 C 0.11 1.14 5.06 -3.71 -0.02 1.12 16 9 N -0.62 -8.36 2.98 -165.47 -0.49 -8.85 16 10 C 0.52 9.04 6.96 -10.98 -0.08 8.96 16 11 O -0.51 -10.35 11.87 5.56 0.07 -10.28 16 12 C 0.07 1.23 1.95 -68.86 -0.13 1.10 16 13 H 0.09 1.66 5.98 -51.93 -0.31 1.35 16 14 C -0.18 -2.71 8.81 37.16 0.33 -2.38 16 15 N -0.67 -14.77 5.56 -102.17 -0.57 -15.33 16 16 C 0.21 5.39 2.42 -68.87 -0.17 5.23 16 17 H 0.00 0.08 7.14 -51.93 -0.37 -0.29 16 18 C -0.12 -3.14 9.17 37.16 0.34 -2.80 16 19 C -0.52 -14.24 8.59 -34.44 -0.30 -14.54 16 20 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 22 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 23 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H 0.05 0.47 7.05 -51.93 -0.37 0.10 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.18 7.29 -51.92 -0.38 0.80 16 31 H 0.09 1.53 6.15 -51.93 -0.32 1.21 16 32 H 0.07 0.63 6.99 -51.93 -0.36 0.26 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.01 5.05 -51.93 -0.26 0.75 16 40 H 0.06 0.69 6.21 -51.93 -0.32 0.37 16 41 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 42 H 0.07 1.18 7.46 -51.93 -0.39 0.79 16 43 H 0.34 7.59 7.93 -39.29 -0.31 7.27 16 44 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.00 0.02 7.43 -51.93 -0.39 -0.37 16 46 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 47 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -29.82 350.14 -8.91 -38.73 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.27 Total: 5.90 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.52 Total: -7.20 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.43 Total: -48.82 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.82 -8.91 -38.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.165 kcal (2) G-P(sol) polarization free energy of solvation -29.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds