Wall clock time and date at job start Tue Mar 31 2020 05:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46993 * 2 1 4 4 H 1.08995 * 109.58963 * 58.93218 * 3 2 1 5 5 C 1.53191 * 109.70421 * 298.57961 * 3 2 1 6 6 C 1.53038 * 109.31471 * 185.50887 * 5 3 2 7 7 C 1.53045 * 109.53806 * 61.36382 * 6 5 3 8 8 C 1.53619 * 109.24237 * 298.51475 * 7 6 5 9 9 N 1.46924 * 108.54426 * 54.85533 * 8 7 6 10 10 C 1.34774 * 120.63146 * 126.37634 * 9 8 7 11 11 O 1.21281 * 119.99928 * 185.54273 * 10 9 8 12 12 C 1.50701 * 120.00085 * 5.52959 * 10 9 8 13 13 H 1.09004 * 109.46569 * 43.46053 * 12 10 9 14 14 C 1.52996 * 109.47253 * 283.46214 * 12 10 9 15 15 N 1.46896 * 109.46837 * 163.46125 * 12 10 9 16 16 C 1.46910 * 110.99691 * 204.99973 * 15 12 10 17 17 H 1.08995 * 109.46982 * 325.00257 * 16 15 12 18 18 C 1.53002 * 109.46700 * 85.00120 * 16 15 12 19 19 C 1.50703 * 109.47001 * 204.99982 * 16 15 12 20 20 H 1.07994 * 119.99797 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99551 * 179.72607 * 19 16 15 22 22 N 1.31517 * 119.99457 * 180.28025 * 21 19 16 23 23 Si 1.86797 * 120.00306 * 0.27676 * 21 19 16 24 24 H 1.48501 * 109.46847 * 89.99789 * 23 21 19 25 25 H 1.48499 * 109.47215 * 209.99928 * 23 21 19 26 26 H 1.48494 * 109.47088 * 330.00209 * 23 21 19 27 27 H 1.08998 * 109.47138 * 185.16208 * 1 2 3 28 28 H 1.09000 * 109.47130 * 305.15955 * 1 2 3 29 29 H 1.09000 * 109.46992 * 65.16687 * 1 2 3 30 30 H 1.08999 * 109.47253 * 239.99715 * 2 1 3 31 31 H 1.08999 * 109.46802 * 120.00027 * 2 1 3 32 32 H 1.09004 * 109.49939 * 305.46253 * 5 3 2 33 33 H 1.08997 * 109.49926 * 65.55526 * 5 3 2 34 34 H 1.09006 * 109.46107 * 181.38507 * 6 5 3 35 35 H 1.08993 * 109.46145 * 301.35950 * 6 5 3 36 36 H 1.08999 * 109.49347 * 58.58755 * 7 6 5 37 37 H 1.08997 * 109.49554 * 178.67876 * 7 6 5 38 38 H 1.09008 * 109.73675 * 295.11616 * 8 7 6 39 39 H 1.08997 * 109.66614 * 174.55277 * 8 7 6 40 40 H 1.09000 * 109.47444 * 184.66980 * 14 12 10 41 41 H 1.08994 * 109.47719 * 304.67453 * 14 12 10 42 42 H 1.09005 * 109.47173 * 64.67383 * 14 12 10 43 43 H 1.00894 * 111.00015 * 81.05296 * 15 12 10 44 44 H 1.09008 * 109.47034 * 60.00255 * 18 16 15 45 45 H 1.08999 * 109.46497 * 179.97438 * 18 16 15 46 46 H 1.08998 * 109.47711 * 300.00159 * 18 16 15 47 47 H 0.97000 * 119.99518 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6622 1.9636 0.8796 5 6 1.5617 2.1594 -1.2665 6 6 2.1881 3.5544 -1.3256 7 6 3.7121 3.4289 -1.3880 8 6 4.2147 2.7270 -0.1173 9 7 3.5091 1.4455 0.0188 10 6 4.1964 0.2952 0.1639 11 8 3.6082 -0.7654 0.1744 12 6 5.6957 0.3269 0.3130 13 1 5.9755 1.1251 1.0006 14 6 6.3386 0.5808 -1.0519 15 7 6.1624 -0.9615 0.8422 16 6 7.4437 -0.8091 1.5445 17 1 8.0441 -0.0495 1.0441 18 6 7.1848 -0.3833 2.9911 19 6 8.1827 -2.1224 1.5320 20 1 7.7446 -2.9839 1.0502 21 6 9.4208 -2.2224 2.1303 22 7 10.0682 -3.3671 2.1146 23 14 10.1788 -0.7320 2.9631 24 1 9.7676 -0.6997 4.3897 25 1 11.6589 -0.8159 2.8764 26 1 9.7125 0.5043 2.2855 27 1 -0.3633 -1.0235 0.0925 28 1 -0.3633 0.5918 0.8402 29 1 -0.3633 0.4316 -0.9326 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.8632 1.5876 -2.1442 33 1 0.4756 2.2489 -1.2457 34 1 1.8301 4.0760 -2.2133 35 1 1.9065 4.1170 -0.4356 36 1 3.9934 2.8452 -2.2645 37 1 4.1565 4.4220 -1.4538 38 1 4.0106 3.3508 0.7530 39 1 5.2868 2.5472 -0.1972 40 1 7.4231 0.5213 -0.9594 41 1 5.9929 -0.1705 -1.7619 42 1 6.0581 1.5725 -1.4069 43 1 6.2322 -1.6500 0.1080 44 1 6.5842 -1.1430 3.4915 45 1 8.1354 -0.2706 3.5122 46 1 6.6502 0.5666 3.0002 47 1 10.9391 -3.4375 2.5359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861618.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:49 Heat of formation + Delta-G solvation = -25.471695 kcal Electronic energy + Delta-G solvation = -23954.673021 eV Core-core repulsion = 20751.734370 eV Total energy + Delta-G solvation = -3202.938651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54824 -37.59545 -36.26144 -34.34543 -33.00380 -32.59076 -30.84748 -29.48762 -27.53502 -25.81312 -25.08208 -24.24812 -23.09135 -21.26991 -20.93745 -19.79903 -18.72302 -17.06706 -16.49822 -15.94305 -15.30823 -15.19882 -14.73737 -14.62151 -14.24072 -13.92038 -13.75951 -13.37702 -13.35231 -13.02941 -12.86214 -12.74309 -12.22390 -12.17989 -12.12505 -11.91137 -11.72786 -11.42461 -11.23429 -11.14095 -11.00734 -10.88854 -10.85739 -10.63103 -10.55051 -10.50387 -10.12472 -9.52514 -9.08529 -8.70601 -8.58998 -8.41811 -7.46665 -6.09545 -4.09459 2.99113 3.04931 3.25965 3.33524 3.37056 4.37391 4.46939 4.59549 4.64138 4.81977 4.92283 5.04835 5.09645 5.14296 5.24008 5.26331 5.33695 5.38325 5.41268 5.45951 5.56982 5.58853 5.67194 5.71786 5.73702 5.81615 5.84027 5.91636 6.01957 6.09716 6.12948 6.26838 6.38431 6.42102 6.47790 6.53586 6.68425 6.77886 6.84043 7.37159 7.52114 7.59374 7.91985 8.34546 8.57013 8.62120 8.96536 9.51955 11.03505 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026347 B = 0.004353 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.496177 B = 6431.033096 C = 6965.066047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.149 3.851 4 H 0.065 0.935 5 C -0.132 4.132 6 C -0.119 4.119 7 C -0.135 4.135 8 C 0.102 3.898 9 N -0.618 5.618 10 C 0.525 3.475 11 O -0.511 6.511 12 C 0.065 3.935 13 H 0.090 0.910 14 C -0.179 4.179 15 N -0.656 5.656 16 C 0.184 3.816 17 H 0.003 0.997 18 C -0.138 4.138 19 C -0.518 4.518 20 H 0.080 0.920 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.278 1.278 25 H -0.298 1.298 26 H -0.269 1.269 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.349 0.651 44 H 0.059 0.941 45 H 0.037 0.963 46 H 0.023 0.977 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.250 16.522 -6.963 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C 0.046 3.954 4 H 0.083 0.917 5 C -0.170 4.170 6 C -0.157 4.157 7 C -0.173 4.173 8 C -0.022 4.022 9 N -0.354 5.354 10 C 0.313 3.687 11 O -0.385 6.385 12 C -0.049 4.049 13 H 0.108 0.892 14 C -0.239 4.239 15 N -0.288 5.288 16 C 0.075 3.925 17 H 0.020 0.980 18 C -0.196 4.196 19 C -0.556 4.556 20 H 0.098 0.902 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.721 3.279 24 H -0.205 1.205 25 H -0.225 1.225 26 H -0.194 1.194 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.169 0.831 44 H 0.078 0.922 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.757 15.843 -6.315 23.219 hybrid contribution 1.139 1.072 -0.174 1.574 sum -14.618 16.914 -6.489 23.278 Atomic orbital electron populations 1.21993 0.97311 1.01542 1.00875 1.22072 0.93248 0.94158 1.05473 1.21278 0.79388 0.97716 0.96984 0.91721 1.22038 1.00379 0.96021 0.98569 1.21513 0.95254 0.97010 1.01901 1.21993 0.96283 1.00726 0.98321 1.21922 0.97765 0.84861 0.97613 1.48190 1.06014 1.06898 1.74302 1.20882 0.89833 0.83004 0.75024 1.90694 1.69314 1.30355 1.48183 1.21520 0.90969 0.96334 0.96091 0.89189 1.22545 1.02412 1.01705 0.97192 1.60240 1.32139 1.04697 1.31710 1.19562 0.85336 0.97156 0.90405 0.97998 1.22102 0.99182 0.98817 0.99489 1.21072 1.01906 0.95586 1.37075 0.90216 1.24925 0.96717 0.95732 0.95671 1.69895 1.14528 1.24506 1.44595 0.86810 0.77178 0.83723 0.80157 1.20498 1.22538 1.19426 0.92667 0.93309 0.93253 0.90774 0.89252 0.91557 0.90920 0.91896 0.91913 0.91392 0.90889 0.91654 0.89021 0.90906 0.92000 0.92294 0.83140 0.92198 0.94407 0.95816 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.45 37.16 0.35 -1.30 16 2 C -0.11 -1.48 3.86 -26.73 -0.10 -1.58 16 3 C 0.15 1.72 2.99 -67.60 -0.20 1.52 16 4 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.13 -1.21 4.90 -26.61 -0.13 -1.34 16 6 C -0.12 -0.92 5.88 -26.69 -0.16 -1.07 16 7 C -0.13 -1.08 6.10 -26.39 -0.16 -1.25 16 8 C 0.10 1.00 5.80 -3.49 -0.02 0.98 16 9 N -0.62 -7.91 2.97 -164.96 -0.49 -8.40 16 10 C 0.52 8.61 6.90 -10.99 -0.08 8.54 16 11 O -0.51 -9.93 11.92 5.56 0.07 -9.86 16 12 C 0.07 1.10 1.95 -68.87 -0.13 0.96 16 13 H 0.09 1.46 6.27 -51.93 -0.33 1.13 16 14 C -0.18 -2.58 8.82 37.16 0.33 -2.26 16 15 N -0.66 -13.87 5.59 -102.16 -0.57 -14.44 16 16 C 0.18 4.33 1.99 -68.86 -0.14 4.19 16 17 H 0.00 0.06 6.15 -51.93 -0.32 -0.26 16 18 C -0.14 -3.11 8.88 37.16 0.33 -2.78 16 19 C -0.52 -14.52 9.17 -34.44 -0.32 -14.84 16 20 H 0.08 2.44 7.86 -52.49 -0.41 2.03 16 21 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 22 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 23 Si 0.89 21.82 24.37 -169.99 -4.14 17.68 16 24 H -0.28 -6.70 6.88 56.52 0.39 -6.31 16 25 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.27 -6.24 6.52 56.52 0.37 -5.87 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.45 6.89 -51.93 -0.36 0.09 16 30 H 0.07 1.12 7.07 -51.93 -0.37 0.76 16 31 H 0.09 1.46 6.41 -51.93 -0.33 1.12 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.58 6.91 -51.93 -0.36 0.22 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 39 H 0.09 0.91 4.27 -51.93 -0.22 0.69 16 40 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.67 6.06 -51.93 -0.31 0.36 16 43 H 0.35 7.65 7.97 -39.29 -0.31 7.33 16 44 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 45 H 0.04 0.87 3.29 -51.93 -0.17 0.70 16 46 H 0.02 0.46 7.43 -51.93 -0.39 0.07 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 343.29 15.07 5.17 5.17 Total: -1.00 -31.15 343.29 -7.81 -38.96 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.09 Total: 5.74 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.52 Total: -8.26 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.29 Total: -49.44 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.68 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.15 -7.81 -38.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861618.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.491 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds