Wall clock time and date at job start Tue Mar 31 2020 05:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47422 * 2 1 4 4 H 1.09000 * 109.58441 * 57.83269 * 3 2 1 5 5 C 1.53194 * 109.70184 * 297.48256 * 3 2 1 6 6 C 1.53038 * 109.31245 * 185.50743 * 5 3 2 7 7 C 1.53040 * 109.53945 * 61.35940 * 6 5 3 8 8 C 1.53192 * 109.31550 * 298.63967 * 7 6 5 9 9 N 1.46924 * 109.58652 * 178.11817 * 3 2 1 10 10 C 1.34772 * 120.63307 * 353.55928 * 9 3 2 11 11 O 1.21279 * 119.99945 * 4.78788 * 10 9 3 12 12 C 1.50697 * 119.99981 * 184.78220 * 10 9 3 13 13 H 1.09007 * 109.47439 * 317.34069 * 12 10 9 14 14 C 1.53001 * 109.47208 * 77.34380 * 12 10 9 15 15 N 1.46897 * 109.47095 * 197.34161 * 12 10 9 16 16 C 1.46907 * 110.99987 * 155.74798 * 15 12 10 17 17 H 1.08994 * 109.47103 * 338.17850 * 16 15 12 18 18 C 1.52992 * 109.47375 * 98.18742 * 16 15 12 19 19 C 1.50705 * 109.46638 * 218.18748 * 16 15 12 20 20 H 1.07998 * 120.00510 * 359.97438 * 19 16 15 21 21 C 1.37884 * 119.99485 * 180.02562 * 19 16 15 22 22 N 1.31521 * 119.99505 * 179.97438 * 21 19 16 23 23 Si 1.86794 * 120.00275 * 359.97438 * 21 19 16 24 24 H 1.48498 * 109.47095 * 90.00200 * 23 21 19 25 25 H 1.48493 * 109.47163 * 210.00318 * 23 21 19 26 26 H 1.48502 * 109.46933 * 330.00117 * 23 21 19 27 27 H 1.09001 * 109.46848 * 185.76550 * 1 2 3 28 28 H 1.09001 * 109.46650 * 305.76199 * 1 2 3 29 29 H 1.08994 * 109.47172 * 65.75984 * 1 2 3 30 30 H 1.08997 * 109.47078 * 239.99984 * 2 1 3 31 31 H 1.09007 * 109.46919 * 120.00098 * 2 1 3 32 32 H 1.08999 * 109.49488 * 305.45975 * 5 3 2 33 33 H 1.08994 * 109.49721 * 65.55285 * 5 3 2 34 34 H 1.09003 * 109.45743 * 301.34606 * 6 5 3 35 35 H 1.08994 * 109.44761 * 181.37741 * 6 5 3 36 36 H 1.09003 * 109.49857 * 178.68497 * 7 6 5 37 37 H 1.09008 * 109.49501 * 58.58724 * 7 6 5 38 38 H 1.08996 * 109.58234 * 294.84387 * 8 7 6 39 39 H 1.08998 * 109.70431 * 174.49390 * 8 7 6 40 40 H 1.08994 * 109.47093 * 58.31511 * 14 12 10 41 41 H 1.09001 * 109.47191 * 178.32420 * 14 12 10 42 42 H 1.09007 * 109.46466 * 298.31967 * 14 12 10 43 43 H 1.00900 * 111.00225 * 279.69757 * 15 12 10 44 44 H 1.09001 * 109.47386 * 186.23518 * 18 16 15 45 45 H 1.08998 * 109.47236 * 306.23479 * 18 16 15 46 46 H 1.09007 * 109.47612 * 66.23347 * 18 16 15 47 47 H 0.96999 * 119.99658 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6464 1.9692 0.8693 5 6 1.5848 2.1513 -1.2795 6 6 2.2123 3.5459 -1.3362 7 6 3.7372 3.4200 -1.3702 8 6 4.2168 2.7256 -0.0917 9 7 3.5086 1.4456 0.0455 10 6 4.1930 0.2962 0.2094 11 8 3.6026 -0.7628 0.2340 12 6 5.6919 0.3271 0.3621 13 1 6.1157 1.0317 -0.3536 14 6 6.0509 0.7655 1.7833 15 7 6.2374 -1.0135 0.1107 16 6 7.6411 -0.9392 -0.3163 17 1 7.8466 0.0529 -0.7179 18 6 8.5536 -1.2032 0.8830 19 6 7.8978 -1.9750 -1.3804 20 1 7.0984 -2.6238 -1.7066 21 6 9.1536 -2.0950 -1.9369 22 7 9.3778 -2.9992 -2.8653 23 14 10.5365 -0.9733 -1.3723 24 1 11.2522 -1.6042 -0.2344 25 1 11.4851 -0.7542 -2.4934 26 1 9.9713 0.3302 -0.9401 27 1 -0.3633 -1.0225 0.1032 28 1 -0.3633 0.6006 0.8339 29 1 -0.3633 0.4219 -0.9370 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.9021 1.5739 -2.1478 33 1 0.4985 2.2409 -1.2789 34 1 1.9145 4.1142 -0.4551 35 1 1.8704 4.0615 -2.2336 36 1 4.1829 4.4127 -1.4341 37 1 4.0343 2.8307 -2.2377 38 1 4.0008 3.3570 0.7701 39 1 5.2900 2.5448 -0.1522 40 1 5.6022 0.0777 2.4999 41 1 7.1344 0.7591 1.9027 42 1 5.6719 1.7722 1.9595 43 1 6.1375 -1.6028 0.9237 44 1 9.5915 -1.0396 0.5928 45 1 8.2921 -0.5246 1.6949 46 1 8.4275 -2.2335 1.2158 47 1 10.2611 -3.0834 -3.2570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861619.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:53 Heat of formation + Delta-G solvation = -21.593171 kcal Electronic energy + Delta-G solvation = -23968.034861 eV Core-core repulsion = 20765.264396 eV Total energy + Delta-G solvation = -3202.770465 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50361 -37.62614 -36.32996 -34.29127 -32.97350 -32.53435 -30.76084 -29.45370 -27.70093 -25.70175 -24.96556 -24.20486 -23.12698 -21.23789 -20.72066 -20.23409 -18.80940 -16.89157 -16.35437 -15.96118 -15.41054 -14.84759 -14.64970 -14.57257 -14.53521 -13.88771 -13.62697 -13.47234 -13.22828 -13.01147 -12.76824 -12.70636 -12.52502 -12.41720 -12.01387 -11.80199 -11.57225 -11.39044 -11.37017 -11.06778 -11.04139 -10.98821 -10.74056 -10.56215 -10.54648 -10.39504 -10.14874 -9.52438 -9.24456 -8.59892 -8.53008 -8.36075 -7.38744 -6.00236 -3.96962 2.99999 3.10744 3.26207 3.32981 3.38316 4.42009 4.51898 4.65189 4.71014 4.86992 4.96593 5.04407 5.13337 5.16558 5.27192 5.30141 5.33359 5.36381 5.41960 5.50820 5.60949 5.62208 5.73124 5.76997 5.79856 5.80257 5.92577 5.92751 5.96500 6.10356 6.15593 6.19319 6.29130 6.34716 6.45721 6.48788 6.52825 6.68918 6.87880 7.09614 7.57951 7.74262 7.92406 8.30919 8.61657 8.74713 9.15581 9.61981 11.13617 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021743 B = 0.004541 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.439957 B = 6164.177330 C = 6416.715402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.114 4.114 3 C 0.150 3.850 4 H 0.064 0.936 5 C -0.134 4.134 6 C -0.118 4.118 7 C -0.138 4.138 8 C 0.107 3.893 9 N -0.617 5.617 10 C 0.525 3.475 11 O -0.512 6.512 12 C 0.066 3.934 13 H 0.095 0.905 14 C -0.181 4.181 15 N -0.650 5.650 16 C 0.186 3.814 17 H 0.028 0.972 18 C -0.184 4.184 19 C -0.494 4.494 20 H 0.083 0.917 21 C 0.066 3.934 22 N -0.901 5.901 23 Si 0.885 3.115 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.271 1.271 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.339 0.661 44 H 0.043 0.957 45 H 0.032 0.968 46 H 0.058 0.942 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.526 15.611 7.825 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.151 4.151 3 C 0.047 3.953 4 H 0.082 0.918 5 C -0.172 4.172 6 C -0.156 4.156 7 C -0.176 4.176 8 C -0.016 4.016 9 N -0.353 5.353 10 C 0.313 3.687 11 O -0.386 6.386 12 C -0.049 4.049 13 H 0.113 0.887 14 C -0.240 4.240 15 N -0.280 5.280 16 C 0.077 3.923 17 H 0.046 0.954 18 C -0.243 4.243 19 C -0.532 4.532 20 H 0.101 0.899 21 C -0.135 4.135 22 N -0.540 5.540 23 Si 0.716 3.284 24 H -0.208 1.208 25 H -0.225 1.225 26 H -0.196 1.196 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.158 0.842 44 H 0.062 0.938 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.939 14.881 7.062 21.579 hybrid contribution 1.424 0.979 1.026 2.010 sum -12.515 15.860 8.088 21.762 Atomic orbital electron populations 1.21988 0.97344 1.01469 1.00884 1.22107 0.93224 0.94204 1.05592 1.21275 0.79402 0.97703 0.96882 0.91831 1.22051 1.00373 0.96141 0.98623 1.21501 0.95280 0.96960 1.01815 1.21942 0.96268 1.00859 0.98561 1.21754 0.97542 0.84834 0.97515 1.48193 1.06095 1.07043 1.73986 1.20831 0.89743 0.82939 0.75168 1.90689 1.69042 1.30260 1.48575 1.21648 0.91755 0.94869 0.96610 0.88737 1.22622 1.02849 1.01461 0.97061 1.60254 1.20745 1.07103 1.39856 1.19727 0.82140 0.97736 0.92673 0.95429 1.22972 1.00836 1.01128 0.99335 1.21049 0.96824 1.17223 1.18124 0.89866 1.24952 0.98251 0.95228 0.95066 1.69893 1.22355 1.34250 1.27535 0.86918 0.82569 0.81743 0.77205 1.20778 1.22467 1.19646 0.92692 0.93434 0.93177 0.90558 0.89320 0.91297 0.90967 0.92061 0.91854 0.90857 0.91074 0.91765 0.89377 0.92129 0.90983 0.92475 0.84246 0.93809 0.94933 0.92255 0.92759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.47 37.16 0.35 -1.34 16 2 C -0.11 -1.54 3.85 -26.73 -0.10 -1.65 16 3 C 0.15 1.78 2.98 -67.60 -0.20 1.57 16 4 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.13 -1.35 4.93 -26.61 -0.13 -1.48 16 6 C -0.12 -1.01 5.88 -26.69 -0.16 -1.17 16 7 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 8 C 0.11 1.10 5.55 -3.71 -0.02 1.08 16 9 N -0.62 -8.11 2.97 -165.22 -0.49 -8.60 16 10 C 0.53 8.77 6.88 -10.99 -0.08 8.70 16 11 O -0.51 -10.09 11.93 5.56 0.07 -10.02 16 12 C 0.07 1.10 2.11 -68.87 -0.15 0.95 16 13 H 0.09 1.56 5.72 -51.93 -0.30 1.27 16 14 C -0.18 -2.44 8.77 37.16 0.33 -2.11 16 15 N -0.65 -13.61 5.61 -102.17 -0.57 -14.19 16 16 C 0.19 4.32 2.15 -68.86 -0.15 4.17 16 17 H 0.03 0.65 6.29 -51.93 -0.33 0.33 16 18 C -0.18 -3.86 8.42 37.15 0.31 -3.55 16 19 C -0.49 -14.13 9.42 -34.44 -0.32 -14.45 16 20 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 21 C 0.07 1.91 5.45 -17.81 -0.10 1.82 16 22 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 23 Si 0.88 21.75 24.31 -169.99 -4.13 17.61 16 24 H -0.28 -6.74 6.93 56.52 0.39 -6.35 16 25 H -0.30 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.48 6.95 -51.93 -0.36 0.12 16 30 H 0.08 1.25 7.17 -51.93 -0.37 0.88 16 31 H 0.09 1.40 6.29 -51.93 -0.33 1.07 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.63 6.95 -51.93 -0.36 0.27 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.92 5.26 -51.93 -0.27 0.65 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.99 5.73 -51.93 -0.30 0.70 16 42 H 0.06 0.63 7.19 -51.93 -0.37 0.26 16 43 H 0.34 6.87 8.05 -39.29 -0.32 6.55 16 44 H 0.04 0.96 3.46 -51.93 -0.18 0.78 16 45 H 0.03 0.56 5.61 -51.93 -0.29 0.27 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 341.87 15.07 5.15 5.15 Total: -1.00 -32.05 341.87 -7.81 -39.86 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -8.03 Total: 6.29 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -0.58 Total: -8.90 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.29 Total: -49.99 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.13 Total: 17.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.05 -7.81 -39.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861619.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.265 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds