Wall clock time and date at job start Tue Mar 31 2020 05:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47013 * 2 1 4 4 C 1.50697 * 109.46740 * 180.02562 * 3 2 1 5 5 O 1.21284 * 120.00235 * 359.97438 * 4 3 2 6 6 N 1.34782 * 120.00006 * 180.02562 * 4 3 2 7 7 C 1.46498 * 120.00343 * 179.97438 * 6 4 3 8 8 C 1.53111 * 109.52307 * 204.99848 * 7 6 4 9 9 C 1.53040 * 109.27976 * 182.37685 * 8 7 6 10 10 N 1.46844 * 109.52213 * 59.17809 * 9 8 7 11 11 C 1.46901 * 111.00526 * 174.16367 * 10 9 8 12 12 C 1.52992 * 109.47859 * 170.00090 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.46848 * 111.20049 * 298.25822 * 10 9 8 23 23 C 1.53045 * 109.52212 * 61.74502 * 22 10 9 24 24 H 1.09002 * 109.46911 * 300.00127 * 1 2 3 25 25 H 1.09002 * 109.47336 * 59.99959 * 1 2 3 26 26 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46911 * 239.99873 * 2 1 3 28 28 H 1.09002 * 109.47336 * 120.00041 * 2 1 3 29 29 H 1.08996 * 109.47005 * 59.99973 * 3 2 1 30 30 H 1.08994 * 109.47113 * 299.99527 * 3 2 1 31 31 H 0.97003 * 119.99614 * 359.97438 * 6 4 3 32 32 H 1.09003 * 109.51897 * 325.12645 * 7 6 4 33 33 H 1.08993 * 109.50713 * 62.43648 * 8 7 6 34 34 H 1.08998 * 109.50742 * 302.31855 * 8 7 6 35 35 H 1.09001 * 109.46414 * 299.16653 * 9 8 7 36 36 H 1.08996 * 109.45780 * 179.18574 * 9 8 7 37 37 H 1.09002 * 109.46980 * 49.99749 * 11 10 9 38 38 H 1.09001 * 109.46628 * 290.00171 * 11 10 9 39 39 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 40 40 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 42 42 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.46861 * 181.75554 * 22 10 9 45 45 H 1.08996 * 109.46450 * 301.72736 * 22 10 9 46 46 H 1.08996 * 109.50378 * 180.88718 * 23 22 10 47 47 H 1.08993 * 109.50521 * 60.75626 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4425 -0.0006 5 8 4.1534 0.3921 -0.0006 6 7 4.2209 2.6097 -0.0002 7 6 5.6859 2.6097 -0.0003 8 6 6.1976 3.9174 0.6100 9 6 7.7268 3.9372 0.5531 10 7 8.1674 3.8223 -0.8429 11 6 9.6244 3.9767 -0.9497 12 6 10.0743 3.6068 -2.3644 13 6 11.5917 3.7682 -2.4756 14 6 12.0349 3.4033 -3.8690 15 1 11.3070 3.0882 -4.6020 16 6 13.3695 3.4726 -4.2083 17 7 14.2557 3.8568 -3.3158 18 14 13.9187 3.0210 -5.9356 19 1 12.7370 2.6251 -6.7432 20 1 14.5794 4.1916 -6.5669 21 1 14.8762 1.8878 -5.8701 22 6 7.7280 2.5527 -1.4357 23 6 6.1988 2.4916 -1.4382 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7359 3.4498 0.0001 32 1 6.0501 1.7666 0.5868 33 1 5.8712 3.9870 1.6476 34 1 5.8015 4.7618 0.0460 35 1 8.1226 3.1005 1.1288 36 1 8.0937 4.8734 0.9738 37 1 10.1130 3.3201 -0.2297 38 1 9.8964 5.0113 -0.7407 39 1 9.5857 4.2634 -3.0843 40 1 9.8022 2.5722 -2.5733 41 1 12.0806 3.1119 -1.7556 42 1 11.8632 4.8030 -2.2669 43 1 15.1947 3.9052 -3.5544 44 1 8.0958 2.4832 -2.4594 45 1 8.1237 1.7225 -0.8507 46 1 5.8732 1.5424 -1.8638 47 1 5.8027 3.3135 -2.0345 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608832328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:14 Heat of formation + Delta-G solvation = -68.510608 kcal Electronic energy + Delta-G solvation = -22083.257254 eV Core-core repulsion = 18878.452296 eV Total energy + Delta-G solvation = -3204.804958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25808 -38.73134 -35.71469 -34.61795 -33.74860 -32.22151 -30.94540 -30.31906 -28.25291 -26.31570 -24.12647 -23.31689 -22.33989 -21.65634 -20.57045 -20.00854 -19.50900 -17.26840 -16.63410 -16.24615 -16.12030 -15.30808 -14.94665 -14.61863 -14.48221 -14.35190 -14.24345 -13.55582 -13.49317 -13.39357 -13.22024 -12.40717 -12.30523 -12.23897 -12.06897 -11.67129 -11.58551 -11.52990 -11.22472 -11.12214 -11.08615 -11.01272 -10.83235 -10.67664 -10.47872 -10.27419 -9.93519 -9.63914 -9.33825 -9.15423 -9.00674 -8.32763 -8.04179 -5.97954 -3.99848 2.45813 2.95397 3.32633 3.39947 3.44507 4.12572 4.41495 4.48579 4.53343 4.64033 4.65383 4.81534 5.01329 5.07425 5.12858 5.22052 5.25172 5.34700 5.37574 5.38005 5.48691 5.55277 5.67352 5.69524 5.72820 5.80370 5.81022 5.88478 5.97874 5.98439 6.05465 6.12307 6.27068 6.31518 6.37535 6.71389 6.79044 7.10375 7.29521 7.39006 7.40677 7.70166 7.84804 8.02422 8.04757 8.45677 9.07467 9.64077 11.13504 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029320 B = 0.002523 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.762294 B =11094.474614 C =11812.729944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.141 4.141 4 C 0.509 3.491 5 O -0.540 6.540 6 N -0.728 5.728 7 C 0.142 3.858 8 C -0.120 4.120 9 C 0.058 3.942 10 N -0.540 5.540 11 C 0.056 3.944 12 C -0.113 4.113 13 C 0.021 3.979 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.051 3.949 23 C -0.123 4.123 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.399 0.601 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.014 0.986 42 H 0.016 0.984 43 H 0.259 0.741 44 H 0.092 0.908 45 H 0.032 0.968 46 H 0.068 0.932 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.252 -1.188 9.856 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.181 4.181 4 C 0.296 3.704 5 O -0.416 6.416 6 N -0.379 5.379 7 C 0.038 3.962 8 C -0.159 4.159 9 C -0.071 4.071 10 N -0.265 5.265 11 C -0.071 4.071 12 C -0.150 4.150 13 C -0.016 4.016 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.077 4.077 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.233 0.767 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.035 0.965 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.847 -1.546 9.625 27.624 hybrid contribution 0.636 -0.368 -0.446 0.859 sum -25.211 -1.915 9.180 26.899 Atomic orbital electron populations 1.21796 0.95508 1.01997 1.01723 1.21283 0.95207 0.94703 1.03641 1.21729 0.91843 1.00244 1.04279 1.20799 0.90315 0.83708 0.75598 1.90721 1.70524 1.31306 1.49075 1.46164 1.07413 1.08589 1.75691 1.21080 0.78861 0.98874 0.97370 1.21843 0.96271 0.97080 1.00676 1.21991 0.93965 1.01233 0.89940 1.62078 1.14328 1.33889 1.16160 1.22281 0.84643 1.00980 0.99165 1.21799 0.99931 1.00017 0.93281 1.19079 0.88505 0.97147 0.96892 1.21285 0.92497 1.44612 0.97176 0.92655 1.25036 0.96925 0.95441 0.97202 1.69977 1.01738 1.48007 1.33836 0.86543 0.78654 0.78058 0.84789 1.19736 1.21033 1.21055 1.22170 0.93961 0.90099 1.01511 1.21970 0.95807 1.02353 0.96105 0.92743 0.92670 0.92393 0.91177 0.91275 0.89045 0.88939 0.76725 0.89820 0.91297 0.90532 0.94922 0.90357 0.95283 0.90995 0.92543 0.93116 0.96792 0.96532 0.93111 0.88961 0.94958 0.91343 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 3 C -0.14 -0.91 5.70 -27.88 -0.16 -1.07 16 4 C 0.51 5.20 7.80 -10.98 -0.09 5.12 16 5 O -0.54 -7.94 15.64 5.55 0.09 -7.85 16 6 N -0.73 -6.30 5.08 -53.69 -0.27 -6.57 16 7 C 0.14 1.55 2.52 -67.81 -0.17 1.38 16 8 C -0.12 -1.15 5.57 -26.65 -0.15 -1.30 16 9 C 0.06 0.70 5.42 -3.83 -0.02 0.68 16 10 N -0.54 -8.03 4.81 -234.67 -1.13 -9.16 16 11 C 0.06 0.98 5.27 -3.83 -0.02 0.96 16 12 C -0.11 -2.35 4.40 -26.74 -0.12 -2.47 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 14 C -0.52 -14.88 9.11 -34.44 -0.31 -15.19 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 18 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.05 0.75 4.85 -3.83 -0.02 0.73 16 23 C -0.12 -1.54 5.68 -26.64 -0.15 -1.69 16 24 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.40 2.26 8.61 -40.82 -0.35 1.91 16 32 H 0.08 1.10 7.58 -51.93 -0.39 0.70 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 37 H 0.03 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.05 6.21 -51.93 -0.32 0.72 16 41 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.09 1.47 5.81 -51.93 -0.30 1.17 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -32.77 370.35 -10.16 -42.93 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -8.93 Total: -3.00 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.21 Total: -12.36 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.66 Total: -42.26 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.77 -10.16 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608832328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.577 kcal (2) G-P(sol) polarization free energy of solvation -32.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds