Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.46928 * 2 1 4 4 H 1.09002 * 109.47063 * 303.39657 * 3 2 1 5 5 N 1.46903 * 109.47614 * 63.39928 * 3 2 1 6 6 C 1.46892 * 110.99722 * 261.77819 * 5 3 2 7 7 C 1.53044 * 109.45967 * 270.37741 * 6 5 3 8 8 C 1.53196 * 109.31024 * 178.60532 * 7 6 5 9 9 N 1.46928 * 108.76549 * 54.65699 * 8 7 6 10 10 C 1.36943 * 120.62813 * 126.36019 * 9 8 7 11 11 H 1.07994 * 119.99736 * 210.64391 * 10 9 8 12 12 C 1.38808 * 119.99818 * 30.64285 * 10 9 8 13 13 N 1.31620 * 120.00554 * 11.51469 * 12 10 9 14 14 Si 1.86805 * 119.99888 * 191.51060 * 12 10 9 15 15 H 1.48502 * 109.47001 * 60.00108 * 14 12 10 16 16 H 1.48497 * 109.47363 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46828 * 300.00287 * 14 12 10 18 18 C 1.46921 * 118.74049 * 306.38284 * 9 8 7 19 19 C 1.53043 * 109.45876 * 150.32533 * 6 5 3 20 20 C 1.53007 * 109.46745 * 183.40377 * 3 2 1 21 21 H 1.09002 * 110.74696 * 299.28890 * 20 3 2 22 22 C 1.55299 * 110.85116 * 62.76974 * 20 3 2 23 23 C 1.55205 * 100.82652 * 152.17747 * 22 20 3 24 24 O 1.43647 * 105.26065 * 323.81709 * 23 22 20 25 25 C 1.43231 * 109.97106 * 24.28176 * 24 23 22 26 26 H 1.08998 * 109.47020 * 178.94036 * 1 2 3 27 27 H 1.09005 * 109.46635 * 298.93377 * 1 2 3 28 28 H 1.08991 * 109.46883 * 58.93604 * 1 2 3 29 29 H 1.09002 * 109.47057 * 119.99413 * 2 1 3 30 30 H 1.08997 * 109.46898 * 239.99700 * 2 1 3 31 31 H 1.00900 * 110.99804 * 137.82331 * 5 3 2 32 32 H 1.08998 * 109.46533 * 30.35537 * 6 5 3 33 33 H 1.09000 * 109.49876 * 298.56950 * 7 6 5 34 34 H 1.08995 * 109.49724 * 58.66937 * 7 6 5 35 35 H 1.08998 * 109.59528 * 294.86645 * 8 7 6 36 36 H 1.09003 * 109.58335 * 174.43511 * 8 7 6 37 37 H 0.96993 * 120.00137 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.58330 * 293.82378 * 18 9 8 39 39 H 1.08998 * 109.59034 * 173.39870 * 18 9 8 40 40 H 1.08990 * 109.49746 * 301.33647 * 19 6 5 41 41 H 1.09005 * 109.49471 * 61.40297 * 19 6 5 42 42 H 1.09002 * 111.12163 * 270.24409 * 22 20 3 43 43 H 1.09001 * 111.12779 * 34.40196 * 22 20 3 44 44 H 1.09000 * 110.36942 * 204.79305 * 23 22 20 45 45 H 1.09008 * 110.20783 * 82.75350 * 23 22 20 46 46 H 1.09000 * 109.83103 * 238.77553 * 25 24 23 47 47 H 1.09006 * 109.90370 * 117.84326 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6278 1.9736 -0.8580 5 7 1.6186 2.1110 1.2384 6 6 0.4126 2.9196 1.0159 7 6 0.8177 4.3345 0.5961 8 6 -0.4424 5.1646 0.3313 9 7 -1.3022 5.1114 1.5215 10 6 -1.7448 6.2637 2.1144 11 1 -1.9264 6.2880 3.1787 12 6 -1.9601 7.4005 1.3475 13 7 -1.9607 7.3178 0.0339 14 14 -2.2492 9.0477 2.1797 15 1 -1.0699 9.3951 3.0129 16 1 -2.4508 10.0955 1.1470 17 1 -3.4558 8.9621 3.0411 18 6 -1.6778 3.7985 2.0636 19 6 -0.4040 2.9836 2.3086 20 6 3.5677 1.4433 -0.0857 21 1 4.0027 0.9273 0.7703 22 6 4.0470 0.8052 -1.4179 23 6 5.4010 1.5361 -1.6207 24 8 5.1848 2.8727 -1.1408 25 6 4.1111 2.8843 -0.1928 26 1 -0.3633 -1.0275 -0.0190 27 1 -0.3633 0.4972 0.8995 28 1 -0.3633 0.5302 -0.8802 29 1 1.8934 -0.5138 0.8901 30 1 1.8933 -0.5139 -0.8899 31 1 2.3656 2.6728 1.6182 32 1 -0.1890 2.4654 0.2285 33 1 1.3982 4.7983 1.3935 34 1 1.4189 4.2865 -0.3117 35 1 -0.9775 4.7538 -0.5249 36 1 -0.1628 6.1984 0.1284 37 1 -2.1108 8.1123 -0.5020 38 1 -2.3137 3.2764 1.3487 39 1 -2.2134 3.9309 3.0036 40 1 -0.6722 1.9741 2.6198 41 1 0.1884 3.4598 3.0899 42 1 4.1896 -0.2700 -1.3095 43 1 3.3561 1.0279 -2.2311 44 1 5.6690 1.5521 -2.6771 45 1 6.1834 1.0474 -1.0399 46 1 3.3217 3.5527 -0.5365 47 1 4.4779 3.2144 0.7792 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813843.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = -40.625134 kcal Electronic energy + Delta-G solvation = -23875.657077 eV Core-core repulsion = 20672.061324 eV Total energy + Delta-G solvation = -3203.595753 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.98545 -38.15274 -36.14255 -33.41185 -31.76518 -31.52257 -29.83300 -29.75549 -28.43221 -25.65366 -24.24533 -22.50427 -22.05836 -21.62270 -21.17788 -20.40555 -19.03489 -16.97223 -16.74650 -16.18506 -15.49385 -14.96045 -14.85211 -14.42288 -13.89210 -13.69393 -13.53927 -13.42128 -13.34300 -12.94653 -12.81715 -12.62246 -12.30060 -12.07821 -11.80518 -11.50703 -11.35799 -11.24746 -10.96017 -10.81303 -10.72492 -10.69267 -10.65071 -10.51600 -10.30585 -10.09616 -9.97002 -9.70884 -9.59270 -9.45385 -8.48551 -8.02791 -6.59670 -5.75799 -3.22690 3.39478 3.44762 3.45855 3.72808 4.12807 4.32680 4.51075 4.65312 4.70193 4.98748 5.06590 5.19199 5.23660 5.28099 5.38252 5.45298 5.47742 5.54131 5.56098 5.59117 5.69280 5.70597 5.72261 5.84171 5.94823 5.97824 6.04565 6.08646 6.19013 6.23630 6.36484 6.43897 6.56694 6.59540 6.67351 6.71590 6.84585 6.87090 7.04590 7.37823 7.41887 7.63850 7.72018 7.81032 8.50288 9.25178 9.87420 10.45321 11.32190 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021302 B = 0.004363 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.100941 B = 6416.142247 C = 7272.564760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.106 4.106 3 C 0.098 3.902 4 H 0.054 0.946 5 N -0.683 5.683 6 C 0.093 3.907 7 C -0.168 4.168 8 C 0.176 3.824 9 N -0.592 5.592 10 C -0.252 4.252 11 H 0.063 0.937 12 C 0.003 3.997 13 N -0.906 5.906 14 Si 0.904 3.096 15 H -0.284 1.284 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.144 3.856 19 C -0.116 4.116 20 C -0.128 4.128 21 H 0.090 0.910 22 C -0.148 4.148 23 C 0.050 3.950 24 O -0.384 6.384 25 C 0.049 3.951 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.336 0.664 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.015 0.985 36 H 0.088 0.912 37 H 0.254 0.746 38 H 0.015 0.985 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.180 -14.968 -2.025 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.012 4.012 4 H 0.072 0.928 5 N -0.313 5.313 6 C -0.016 4.016 7 C -0.208 4.208 8 C 0.049 3.951 9 N -0.315 5.315 10 C -0.382 4.382 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.551 5.551 14 Si 0.734 3.266 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.209 1.209 18 C 0.017 3.983 19 C -0.156 4.156 20 C -0.147 4.147 21 H 0.108 0.892 22 C -0.186 4.186 23 C -0.027 4.027 24 O -0.303 6.303 25 C -0.028 4.028 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.895 -15.189 -1.965 18.796 hybrid contribution 0.120 1.463 -0.088 1.470 sum 11.016 -13.727 -2.053 17.720 Atomic orbital electron populations 1.21809 0.95686 1.00866 1.02585 1.21521 0.96387 0.95453 1.01105 1.21563 0.91189 0.95899 0.92596 0.92829 1.60759 1.08112 1.35529 1.26943 1.21674 0.90456 0.91469 0.98036 1.22909 1.01251 0.97176 0.99493 1.20698 0.86821 0.99489 0.88050 1.44009 1.55159 1.00347 1.31965 1.19151 1.39198 0.88580 0.91238 0.91885 1.25129 0.99884 0.99140 0.95349 1.69967 1.53476 1.28217 1.03435 0.86351 0.78255 0.83642 0.78376 1.21025 1.21623 1.20864 1.20937 0.93106 0.87142 0.97065 1.21983 0.97965 0.99132 0.96528 1.23033 0.96961 0.95993 0.98756 0.89173 1.23336 0.97063 1.00673 0.97501 1.23408 0.96655 0.82989 0.99603 1.88413 1.53751 1.27753 1.60421 1.23323 0.89755 0.96701 0.92981 0.93541 0.91137 0.93382 0.91704 0.92607 0.84533 0.90949 0.92614 0.93903 0.96683 0.89423 0.93606 0.96693 0.92817 0.92757 0.92595 0.89781 0.90171 0.89910 0.92385 0.90762 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.65 37.16 0.32 -1.47 16 2 C -0.11 -1.13 5.49 -26.73 -0.15 -1.28 16 3 C 0.10 1.14 1.52 -67.71 -0.10 1.03 16 4 H 0.05 0.72 7.47 -51.93 -0.39 0.33 16 5 N -0.68 -9.14 5.83 -99.69 -0.58 -9.72 16 6 C 0.09 1.51 1.23 -67.67 -0.08 1.43 16 7 C -0.17 -3.14 5.34 -26.61 -0.14 -3.29 16 8 C 0.18 4.21 5.26 -3.71 -0.02 4.19 16 9 N -0.59 -14.89 2.99 -172.32 -0.51 -15.40 16 10 C -0.25 -6.97 9.59 -15.06 -0.14 -7.11 16 11 H 0.06 1.71 7.85 -52.49 -0.41 1.30 16 12 C 0.00 0.09 5.03 -17.43 -0.09 0.01 16 13 N -0.91 -26.46 11.04 55.49 0.61 -25.84 16 14 Si 0.90 21.85 29.57 -169.99 -5.03 16.83 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.14 3.05 6.52 -3.71 -0.02 3.03 16 19 C -0.12 -2.04 5.64 -26.61 -0.15 -2.19 16 20 C -0.13 -1.30 2.53 -88.67 -0.22 -1.53 16 21 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 22 C -0.15 -1.29 5.58 -24.34 -0.14 -1.43 16 23 C 0.05 0.47 7.78 38.33 0.30 0.77 16 24 O -0.38 -5.02 11.36 -35.23 -0.40 -5.42 16 25 C 0.05 0.59 6.46 37.88 0.24 0.83 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.94 6.17 -51.93 -0.32 0.62 16 28 H 0.05 0.59 7.95 -51.93 -0.41 0.17 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.52 7.24 -51.93 -0.38 0.14 16 31 H 0.34 4.45 7.04 -39.29 -0.28 4.17 16 32 H 0.07 1.24 5.97 -51.93 -0.31 0.93 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.04 0.75 6.77 -51.93 -0.35 0.39 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 37 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 38 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 40 H 0.05 0.86 7.74 -51.93 -0.40 0.46 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 43 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.07 1.00 6.48 -51.93 -0.34 0.66 16 47 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -29.24 349.27 -9.56 -38.80 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -8.51 Total: 2.50 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -0.40 Total: -7.00 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.48 Total: -50.97 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.40 Total: -5.42 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.24 -9.56 -38.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813843.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.829 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds