Wall clock time and date at job start Tue Mar 31 2020 05:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46917 * 2 1 4 4 H 1.09001 * 109.46609 * 53.71761 * 3 2 1 5 5 N 1.46892 * 109.47630 * 293.71538 * 3 2 1 6 6 C 1.46896 * 111.00307 * 153.42197 * 5 3 2 7 7 C 1.53041 * 109.45936 * 276.30170 * 6 5 3 8 8 C 1.53199 * 109.30960 * 178.60250 * 7 6 5 9 9 N 1.46922 * 108.76716 * 54.65251 * 8 7 6 10 10 C 1.36935 * 120.63131 * 126.36492 * 9 8 7 11 11 H 1.08003 * 119.99931 * 209.26571 * 10 9 8 12 12 C 1.38815 * 120.00052 * 29.26590 * 10 9 8 13 13 N 1.31616 * 119.99994 * 17.37581 * 12 10 9 14 14 Si 1.86805 * 119.99848 * 197.37868 * 12 10 9 15 15 H 1.48503 * 109.47080 * 59.99731 * 14 12 10 16 16 H 1.48499 * 109.46862 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47154 * 299.99998 * 14 12 10 18 18 C 1.46929 * 118.73965 * 306.37947 * 9 8 7 19 19 C 1.53045 * 109.46154 * 156.24275 * 6 5 3 20 20 C 1.53000 * 109.46900 * 173.70884 * 3 2 1 21 21 H 1.09001 * 110.45548 * 177.39360 * 20 3 2 22 22 C 1.54503 * 110.51439 * 300.00823 * 20 3 2 23 23 C 1.54483 * 104.06786 * 118.64316 * 22 20 3 24 24 O 1.44431 * 104.79726 * 23.97590 * 23 22 20 25 25 C 1.44422 * 105.27677 * 319.48909 * 24 23 22 26 26 H 1.08998 * 109.47366 * 186.60405 * 1 2 3 27 27 H 1.09002 * 109.47296 * 306.59944 * 1 2 3 28 28 H 1.09002 * 109.47465 * 66.59900 * 1 2 3 29 29 H 1.08997 * 109.46731 * 240.00806 * 2 1 3 30 30 H 1.08992 * 109.47307 * 120.00233 * 2 1 3 31 31 H 1.00901 * 111.00101 * 29.46360 * 5 3 2 32 32 H 1.09000 * 109.46006 * 36.26762 * 6 5 3 33 33 H 1.08998 * 109.49348 * 298.55740 * 7 6 5 34 34 H 1.08989 * 109.50229 * 58.65975 * 7 6 5 35 35 H 1.08997 * 109.59708 * 294.86155 * 8 7 6 36 36 H 1.09008 * 109.58212 * 174.43370 * 8 7 6 37 37 H 0.96999 * 119.99955 * 180.02562 * 13 12 10 38 38 H 1.08992 * 109.58887 * 293.82704 * 18 9 8 39 39 H 1.09000 * 109.58542 * 173.39906 * 18 9 8 40 40 H 1.09000 * 109.49650 * 301.33783 * 19 6 5 41 41 H 1.08998 * 109.49739 * 61.40309 * 19 6 5 42 42 H 1.09003 * 110.50781 * 237.28850 * 22 20 3 43 43 H 1.09000 * 110.51125 * 359.85766 * 22 20 3 44 44 H 1.08993 * 110.37478 * 142.80253 * 23 22 20 45 45 H 1.08996 * 110.37090 * 265.04081 * 23 22 20 46 46 H 1.09001 * 110.37072 * 281.68117 * 25 24 23 47 47 H 1.09004 * 110.37149 * 159.34796 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5876 1.9877 0.8284 5 7 1.6780 2.0900 -1.2679 6 6 1.5591 3.5446 -1.1012 7 6 0.1647 3.8846 -0.5700 8 6 0.0563 5.3988 -0.3644 9 7 0.4032 6.0728 -1.6230 10 6 -0.4505 6.9843 -2.1847 11 1 -0.4650 7.1218 -3.2558 12 6 -1.2972 7.7314 -1.3774 13 7 -1.0597 7.8285 -0.0865 14 14 -2.7739 8.5991 -2.1233 15 1 -3.6706 7.5970 -2.7534 16 1 -3.5127 9.3232 -1.0579 17 1 -2.3125 9.5662 -3.1513 18 6 1.6835 5.7500 -2.2677 19 6 1.7738 4.2318 -2.4517 20 6 3.5618 1.4455 0.1581 21 1 3.9474 2.4640 0.1140 22 6 3.9695 0.7690 1.4860 23 6 4.8263 -0.4383 1.0448 24 8 5.3272 -0.0777 -0.2610 25 6 4.2204 0.5668 -0.9285 26 1 -0.3634 -1.0208 0.1182 27 1 -0.3634 0.6127 0.8250 28 1 -0.3634 0.4081 -0.9431 29 1 1.8932 -0.5137 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 0.8276 1.6984 -1.6441 32 1 2.3119 3.8917 -0.3934 33 1 -0.5875 3.5602 -1.2890 34 1 0.0035 3.3761 0.3804 35 1 0.7458 5.7116 0.4197 36 1 -0.9642 5.6569 -0.0809 37 1 -1.6516 8.3503 0.4776 38 1 2.5056 6.0913 -1.6388 39 1 1.7367 6.2398 -3.2400 40 1 2.7579 3.9704 -2.8406 41 1 1.0065 3.9036 -3.1529 42 1 4.5587 1.4524 2.0975 43 1 3.0867 0.4347 2.0311 44 1 5.6524 -0.5913 1.7391 45 1 4.2123 -1.3368 0.9826 46 1 3.5131 -0.1772 -1.2951 47 1 4.5811 1.1858 -1.7500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813844.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:46 Heat of formation + Delta-G solvation = -37.287326 kcal Electronic energy + Delta-G solvation = -23779.959298 eV Core-core repulsion = 20576.508283 eV Total energy + Delta-G solvation = -3203.451015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.02474 -38.09485 -36.17007 -33.49123 -31.75813 -31.41451 -29.89197 -29.46762 -28.45967 -25.38752 -24.20222 -23.32021 -22.12161 -21.86111 -21.40499 -19.29423 -19.08844 -16.86266 -16.46528 -15.99044 -15.65757 -15.05781 -14.93428 -14.67169 -14.21477 -13.78644 -13.60371 -13.47704 -13.06481 -13.04220 -12.86105 -12.51814 -12.28204 -11.89397 -11.58437 -11.55181 -11.35807 -11.17688 -11.02317 -10.98247 -10.83440 -10.72431 -10.69758 -10.41021 -10.26974 -10.17345 -9.98763 -9.69622 -9.64275 -9.49683 -8.48639 -8.03562 -6.64173 -5.78685 -3.21353 3.38209 3.43775 3.45263 3.94586 4.23633 4.50306 4.61654 4.70403 4.85624 4.88438 4.97054 5.05817 5.23900 5.29071 5.34557 5.44442 5.49594 5.56879 5.59681 5.60643 5.67091 5.74488 5.77490 5.85388 5.92001 5.94091 5.95923 6.05815 6.13540 6.17108 6.25341 6.34709 6.51906 6.56901 6.63568 6.69202 6.78039 6.85213 7.02999 7.32747 7.39683 7.59496 7.69292 7.80419 8.46620 9.22313 9.85992 10.43869 11.29924 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029895 B = 0.003818 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.382974 B = 7331.656129 C = 7617.059372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C 0.095 3.905 4 H 0.050 0.950 5 N -0.684 5.684 6 C 0.096 3.904 7 C -0.166 4.166 8 C 0.177 3.823 9 N -0.591 5.591 10 C -0.254 4.254 11 H 0.064 0.936 12 C 0.004 3.996 13 N -0.903 5.903 14 Si 0.901 3.099 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.282 1.282 18 C 0.145 3.855 19 C -0.117 4.117 20 C -0.107 4.107 21 H 0.082 0.918 22 C -0.155 4.155 23 C 0.047 3.953 24 O -0.383 6.383 25 C 0.059 3.941 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.339 0.661 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.016 0.984 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.017 -16.945 2.433 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C -0.015 4.015 4 H 0.068 0.932 5 N -0.316 5.316 6 C -0.013 4.013 7 C -0.206 4.206 8 C 0.050 3.950 9 N -0.314 5.314 10 C -0.383 4.383 11 H 0.082 0.918 12 C -0.195 4.195 13 N -0.547 5.547 14 Si 0.731 3.269 15 H -0.211 1.211 16 H -0.217 1.217 17 H -0.208 1.208 18 C 0.018 3.982 19 C -0.157 4.157 20 C -0.127 4.127 21 H 0.101 0.899 22 C -0.193 4.193 23 C -0.030 4.030 24 O -0.302 6.302 25 C -0.018 4.018 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.100 0.900 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.784 -16.845 2.233 18.690 hybrid contribution -1.930 0.671 0.384 2.079 sum 5.854 -16.174 2.616 17.398 Atomic orbital electron populations 1.21830 0.95718 1.01642 1.02181 1.21871 0.95912 0.96623 1.02536 1.21475 0.93674 0.94034 0.92342 0.93228 1.60741 1.40363 1.04727 1.25739 1.21522 0.96473 0.85685 0.97649 1.22839 0.96933 1.01729 0.99142 1.20639 1.01209 0.85676 0.87431 1.44028 1.16140 1.46176 1.25095 1.19142 1.14484 1.13730 0.90987 0.91825 1.25058 1.00915 0.97677 0.95867 1.70032 1.37573 1.42825 1.04275 0.86392 0.83066 0.79325 0.78132 1.21064 1.21656 1.20832 1.20929 0.88767 0.91889 0.96639 1.21971 1.00358 0.97413 0.95912 1.22486 0.95752 1.00583 0.93845 0.89933 1.23043 1.00375 0.97844 0.98022 1.23345 0.97686 0.96513 0.85495 1.89104 1.35441 1.78465 1.27237 1.23465 0.88024 0.94871 0.95397 0.92658 0.92643 0.92424 0.90905 0.91434 0.84119 0.91425 0.92696 0.93885 0.96607 0.90006 0.93646 0.96653 0.92763 0.92661 0.92602 0.90827 0.90377 0.89631 0.92651 0.91681 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.64 37.16 0.36 -1.14 16 2 C -0.13 -1.26 4.85 -26.73 -0.13 -1.39 16 3 C 0.09 1.09 1.57 -67.71 -0.11 0.99 16 4 H 0.05 0.65 7.00 -51.93 -0.36 0.28 16 5 N -0.68 -9.03 5.83 -99.70 -0.58 -9.61 16 6 C 0.10 1.56 2.25 -67.67 -0.15 1.41 16 7 C -0.17 -3.07 5.31 -26.61 -0.14 -3.21 16 8 C 0.18 4.20 5.30 -3.71 -0.02 4.18 16 9 N -0.59 -14.84 2.99 -172.31 -0.51 -15.35 16 10 C -0.25 -7.01 9.57 -15.06 -0.14 -7.15 16 11 H 0.06 1.73 7.89 -52.48 -0.41 1.31 16 12 C 0.00 0.10 4.89 -17.43 -0.09 0.01 16 13 N -0.90 -26.30 11.31 55.49 0.63 -25.68 16 14 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.14 3.06 6.52 -3.71 -0.02 3.03 16 19 C -0.12 -2.04 5.69 -26.61 -0.15 -2.19 16 20 C -0.11 -1.22 3.08 -89.05 -0.27 -1.50 16 21 H 0.08 1.08 7.57 -51.93 -0.39 0.69 16 22 C -0.15 -1.49 6.11 -25.16 -0.15 -1.64 16 23 C 0.05 0.45 7.63 37.94 0.29 0.73 16 24 O -0.38 -4.83 11.65 -35.23 -0.41 -5.24 16 25 C 0.06 0.68 6.78 37.94 0.26 0.94 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.57 8.13 -51.93 -0.42 0.14 16 28 H 0.06 0.58 6.72 -51.93 -0.35 0.23 16 29 H 0.07 0.70 6.19 -51.93 -0.32 0.38 16 30 H 0.07 0.58 6.35 -51.93 -0.33 0.25 16 31 H 0.34 4.41 6.41 -39.29 -0.25 4.15 16 32 H 0.07 1.17 7.26 -51.93 -0.38 0.80 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.04 0.73 7.34 -51.94 -0.38 0.35 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 2.18 6.16 -51.92 -0.32 1.86 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.67 6.47 -51.93 -0.34 0.34 16 44 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.07 0.72 5.58 -51.93 -0.29 0.43 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -29.08 348.61 -9.45 -38.54 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.32 Total: 2.31 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -0.48 Total: -6.92 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.47 Total: -50.64 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.41 Total: -5.24 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.08 -9.45 -38.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813844.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.248 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds