Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47170 * 2 1 4 4 H 1.09001 * 109.46836 * 54.16188 * 3 2 1 5 5 N 1.46897 * 109.46831 * 294.16399 * 3 2 1 6 6 C 1.46900 * 110.99946 * 135.40428 * 5 3 2 7 7 C 1.53036 * 109.46099 * 276.24590 * 6 5 3 8 8 C 1.53191 * 109.31595 * 178.59995 * 7 6 5 9 9 N 1.46935 * 108.76344 * 54.65661 * 8 7 6 10 10 C 1.36933 * 120.63145 * 126.40741 * 9 8 7 11 11 H 1.08003 * 119.99788 * 328.90446 * 10 9 8 12 12 C 1.38811 * 120.00095 * 148.89887 * 10 9 8 13 13 N 1.31613 * 119.99831 * 161.93775 * 12 10 9 14 14 Si 1.86799 * 120.00012 * 341.93904 * 12 10 9 15 15 H 1.48496 * 109.47255 * 90.50680 * 14 12 10 16 16 H 1.48495 * 109.47273 * 210.50833 * 14 12 10 17 17 H 1.48498 * 109.47086 * 330.50777 * 14 12 10 18 18 C 1.46924 * 118.73622 * 306.38358 * 9 8 7 19 19 C 1.53048 * 109.45827 * 156.19260 * 6 5 3 20 20 C 1.53000 * 109.47330 * 174.16150 * 3 2 1 21 21 H 1.08999 * 111.01819 * 64.22162 * 20 3 2 22 22 C 1.55302 * 111.12326 * 300.00050 * 20 3 2 23 23 C 1.54384 * 102.25180 * 207.94746 * 22 20 3 24 24 O 1.43233 * 107.58941 * 21.35724 * 23 22 20 25 25 C 1.43650 * 109.97118 * 1.71085 * 24 23 22 26 26 H 1.09002 * 109.47344 * 305.38811 * 1 2 3 27 27 H 1.09002 * 109.47273 * 65.39264 * 1 2 3 28 28 H 1.09007 * 109.46838 * 185.38719 * 1 2 3 29 29 H 1.09001 * 109.47358 * 240.00288 * 2 1 3 30 30 H 1.08997 * 109.47485 * 120.00227 * 2 1 3 31 31 H 1.00896 * 111.00474 * 11.44618 * 5 3 2 32 32 H 1.09003 * 109.45865 * 36.21965 * 6 5 3 33 33 H 1.09001 * 109.50004 * 298.56708 * 7 6 5 34 34 H 1.09006 * 109.49832 * 58.66301 * 7 6 5 35 35 H 1.08997 * 109.59717 * 294.87321 * 8 7 6 36 36 H 1.09001 * 109.70626 * 174.50562 * 8 7 6 37 37 H 0.96998 * 119.99876 * 180.02562 * 13 12 10 38 38 H 1.08996 * 109.59092 * 293.82273 * 18 9 8 39 39 H 1.08998 * 109.70068 * 173.46103 * 18 9 8 40 40 H 1.08995 * 109.49490 * 301.33406 * 19 6 5 41 41 H 1.08996 * 109.49474 * 61.43376 * 19 6 5 42 42 H 1.09001 * 110.84655 * 89.75796 * 22 20 3 43 43 H 1.08995 * 110.85144 * 326.13936 * 22 20 3 44 44 H 1.09005 * 109.83090 * 261.84487 * 23 22 20 45 45 H 1.09004 * 109.82982 * 140.87464 * 23 22 20 46 46 H 1.09001 * 110.31120 * 94.48364 * 25 24 23 47 47 H 1.08993 * 110.31048 * 216.65682 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5938 1.9857 0.8331 5 7 1.6687 2.0931 -1.2636 6 6 1.1399 3.4428 -1.0254 7 6 -0.3475 3.3534 -0.6764 8 6 -0.8872 4.7590 -0.3944 9 7 -0.5888 5.6199 -1.5472 10 6 -1.5846 6.3278 -2.1656 11 1 -2.5903 5.9350 -2.1914 12 6 -1.3014 7.5503 -2.7590 13 7 -2.1327 8.0612 -3.6423 14 14 0.2594 8.4702 -2.3041 15 1 1.3571 8.0652 -3.2185 16 1 0.0264 9.9316 -2.4271 17 1 0.6355 8.1450 -0.9048 18 6 0.7983 5.7071 -2.0234 19 6 1.3192 4.2907 -2.2868 20 6 3.5629 1.4451 0.1467 21 1 4.0392 0.9725 -0.7122 22 6 3.9985 0.7646 1.4730 23 6 5.3352 1.4730 1.7811 24 8 5.3402 2.7162 1.0698 25 6 4.1007 2.8821 0.3629 26 1 -0.3634 0.5951 0.8378 27 1 -0.3634 0.4279 -0.9343 28 1 -0.3633 -1.0232 0.0965 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.0076 1.5315 -1.7789 32 1 1.6799 3.9036 -0.1982 33 1 -0.8919 2.9155 -1.5131 34 1 -0.4768 2.7300 0.2085 35 1 -0.4074 5.1629 0.4971 36 1 -1.9654 4.7148 -0.2408 37 1 -1.9346 8.9153 -4.0573 38 1 1.4156 6.1882 -1.2647 39 1 0.8345 6.2870 -2.9456 40 1 2.3764 4.3346 -2.5483 41 1 0.7590 3.8439 -3.1081 42 1 4.1506 -0.3050 1.3285 43 1 3.2700 0.9508 2.2621 44 1 6.1676 0.8531 1.4480 45 1 5.4168 1.6593 2.8520 46 1 3.3986 3.4627 0.9613 47 1 4.2745 3.3693 -0.5964 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813845.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = -36.476033 kcal Electronic energy + Delta-G solvation = -23951.863079 eV Core-core repulsion = 20748.447244 eV Total energy + Delta-G solvation = -3203.415835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.95436 -38.38375 -36.47793 -33.53782 -31.91578 -31.60788 -30.32487 -29.86343 -28.77922 -25.76421 -24.10826 -22.81776 -22.33558 -21.79329 -21.44417 -20.31923 -19.42676 -16.83921 -16.79520 -16.07875 -15.71952 -15.17487 -14.99046 -14.72675 -14.15045 -13.84822 -13.70756 -13.64563 -13.56348 -13.26204 -12.88993 -12.76418 -12.44796 -12.20511 -11.92983 -11.73157 -11.72225 -11.45387 -11.22595 -11.07842 -10.93727 -10.77098 -10.69533 -10.58629 -10.49182 -10.17111 -10.03435 -9.66758 -9.55724 -9.46653 -8.59914 -8.22537 -6.90543 -5.93755 -3.33350 3.34712 3.49961 3.53523 3.78115 4.09744 4.30649 4.54885 4.65930 4.69611 4.90062 4.91416 4.97624 5.03637 5.15960 5.20944 5.27115 5.30630 5.36685 5.46066 5.48566 5.53677 5.61817 5.69026 5.73674 5.75635 5.77502 5.83853 5.88720 5.93463 6.06216 6.09704 6.11816 6.21073 6.31744 6.37481 6.52012 6.63912 6.68908 6.74136 6.91230 6.94348 7.25504 7.53363 8.01856 8.35439 8.96664 9.73561 10.13216 11.22482 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021536 B = 0.004761 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.837466 B = 5879.976161 C = 6811.133852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.133 4.133 3 C 0.098 3.902 4 H 0.057 0.943 5 N -0.683 5.683 6 C 0.094 3.906 7 C -0.161 4.161 8 C 0.151 3.849 9 N -0.606 5.606 10 C -0.261 4.261 11 H 0.082 0.918 12 C 0.026 3.974 13 N -0.911 5.911 14 Si 0.886 3.114 15 H -0.287 1.287 16 H -0.303 1.303 17 H -0.271 1.271 18 C 0.125 3.875 19 C -0.119 4.119 20 C -0.105 4.105 21 H 0.090 0.910 22 C -0.153 4.153 23 C 0.051 3.949 24 O -0.389 6.389 25 C 0.061 3.939 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.342 0.658 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.019 0.981 36 H 0.061 0.939 37 H 0.263 0.737 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.736 -17.605 9.689 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.171 4.171 3 C -0.013 4.013 4 H 0.075 0.925 5 N -0.314 5.314 6 C -0.015 4.015 7 C -0.202 4.202 8 C 0.025 3.975 9 N -0.330 5.330 10 C -0.390 4.390 11 H 0.100 0.900 12 C -0.173 4.173 13 N -0.554 5.554 14 Si 0.716 3.284 15 H -0.214 1.214 16 H -0.232 1.232 17 H -0.197 1.197 18 C -0.001 4.001 19 C -0.158 4.158 20 C -0.125 4.125 21 H 0.108 0.892 22 C -0.191 4.191 23 C -0.025 4.025 24 O -0.308 6.308 25 C -0.016 4.016 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.162 0.838 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.037 0.963 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.474 -17.094 9.443 22.650 hybrid contribution -0.255 0.229 0.554 0.651 sum 11.219 -16.865 9.997 22.588 Atomic orbital electron populations 1.21877 0.95569 1.01741 1.02271 1.21878 0.96082 0.96524 1.02622 1.21480 0.93234 0.94035 0.92520 0.92478 1.60674 1.47870 1.03956 1.18891 1.21621 0.93223 0.88345 0.98339 1.22743 0.97143 0.99779 1.00523 1.20851 0.98724 0.88578 0.89373 1.44335 1.04007 1.52457 1.32160 1.18894 0.91207 0.98788 1.30066 0.90000 1.25356 0.97291 0.96611 0.98068 1.69811 1.38017 1.20022 1.27524 0.86897 0.83591 0.78534 0.79342 1.21405 1.23165 1.19655 1.21360 0.85966 0.94507 0.98229 1.21987 1.00198 0.96789 0.96875 1.22868 0.96433 0.95815 0.97357 0.89170 1.23200 0.97205 1.00684 0.98026 1.23073 0.97363 0.85651 0.96462 1.88405 1.37806 1.38553 1.66078 1.23426 0.85026 0.96477 0.96626 0.92590 0.92331 0.92601 0.91258 0.91406 0.83810 0.91179 0.91857 0.93085 0.96289 0.92058 0.92759 0.95986 0.90896 0.92292 0.91869 0.90151 0.90648 0.91612 0.91848 0.92569 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.32 37.15 0.35 -1.01 16 2 C -0.13 -1.11 5.22 -26.73 -0.14 -1.25 16 3 C 0.10 0.99 1.42 -67.71 -0.10 0.89 16 4 H 0.06 0.64 7.03 -51.93 -0.37 0.27 16 5 N -0.68 -8.24 5.98 -99.69 -0.60 -8.83 16 6 C 0.09 1.39 2.05 -67.67 -0.14 1.25 16 7 C -0.16 -2.50 5.31 -26.61 -0.14 -2.64 16 8 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 9 N -0.61 -14.33 2.72 -172.31 -0.47 -14.80 16 10 C -0.26 -7.33 10.02 -15.06 -0.15 -7.48 16 11 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 12 C 0.03 0.75 5.25 -17.43 -0.09 0.66 16 13 N -0.91 -28.12 13.97 55.49 0.78 -27.35 16 14 Si 0.89 22.73 24.35 -169.99 -4.14 18.59 16 15 H -0.29 -7.09 6.59 56.52 0.37 -6.72 16 16 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 17 H -0.27 -6.87 6.73 56.52 0.38 -6.49 16 18 C 0.13 2.73 4.20 -3.71 -0.02 2.72 16 19 C -0.12 -2.09 5.69 -26.60 -0.15 -2.24 16 20 C -0.11 -1.06 2.84 -88.37 -0.25 -1.31 16 21 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.15 -1.27 5.30 -24.79 -0.13 -1.40 16 23 C 0.05 0.49 7.79 37.88 0.30 0.79 16 24 O -0.39 -5.12 11.36 -35.23 -0.40 -5.52 16 25 C 0.06 0.74 6.45 38.18 0.25 0.99 16 26 H 0.06 0.51 7.59 -51.93 -0.39 0.12 16 27 H 0.06 0.55 6.87 -51.93 -0.36 0.20 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.50 7.05 -51.93 -0.37 0.13 16 31 H 0.34 4.03 6.50 -39.29 -0.26 3.77 16 32 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.68 6.72 -51.93 -0.35 0.33 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.02 0.48 7.05 -51.93 -0.37 0.12 16 39 H 0.07 1.76 4.76 -51.93 -0.25 1.51 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 43 H 0.07 0.60 8.03 -51.93 -0.42 0.19 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.72 7.13 -51.93 -0.37 0.35 16 47 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 345.03 15.07 5.20 5.20 Total: -1.00 -30.38 345.03 -8.56 -38.93 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.48 Total: 0.89 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -0.44 Total: -7.11 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.29 Total: -50.98 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.40 Total: -5.52 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -4.14 Total: 18.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.38 -8.56 -38.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813845.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.458 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds