Wall clock time and date at job start Tue Mar 31 2020 05:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 H 1.09005 * 109.47524 * 304.63087 * 3 2 1 5 5 N 1.46901 * 109.46975 * 64.63337 * 3 2 1 6 6 C 1.46903 * 111.00020 * 205.99828 * 5 3 2 7 7 C 1.53082 * 109.43993 * 85.88858 * 6 5 3 8 8 C 1.53186 * 109.29423 * 181.23386 * 7 6 5 9 9 N 1.46928 * 108.89618 * 305.57861 * 8 7 6 10 10 C 1.36930 * 120.63335 * 233.51685 * 9 8 7 11 11 H 1.08004 * 120.00323 * 146.64466 * 10 9 8 12 12 C 1.38813 * 120.00089 * 326.64119 * 10 9 8 13 13 N 1.31617 * 120.00319 * 163.80109 * 12 10 9 14 14 Si 1.86801 * 119.99694 * 343.80351 * 12 10 9 15 15 H 1.48500 * 109.47387 * 90.19578 * 14 12 10 16 16 H 1.48505 * 109.46931 * 210.19254 * 14 12 10 17 17 H 1.48492 * 109.47331 * 330.19403 * 14 12 10 18 18 C 1.46932 * 118.73404 * 53.53808 * 9 8 7 19 19 C 1.53033 * 109.45974 * 206.09156 * 6 5 3 20 20 C 1.53002 * 109.47271 * 184.63124 * 3 2 1 21 21 H 1.09001 * 110.80415 * 185.70306 * 20 3 2 22 22 C 1.54809 * 110.90556 * 62.07715 * 20 3 2 23 23 C 1.54099 * 104.18635 * 220.92283 * 22 20 3 24 24 O 1.43741 * 107.29633 * 357.97090 * 23 22 20 25 25 C 1.44421 * 106.99902 * 26.48324 * 24 23 22 26 26 H 1.08998 * 109.47667 * 184.21648 * 1 2 3 27 27 H 1.09004 * 109.46850 * 304.22058 * 1 2 3 28 28 H 1.09001 * 109.47601 * 64.21222 * 1 2 3 29 29 H 1.09007 * 109.46485 * 240.00587 * 2 1 3 30 30 H 1.08989 * 109.47398 * 120.00755 * 2 1 3 31 31 H 1.00899 * 111.00190 * 82.05075 * 5 3 2 32 32 H 1.09000 * 109.46313 * 326.06733 * 6 5 3 33 33 H 1.09004 * 109.38504 * 61.36037 * 7 6 5 34 34 H 1.08999 * 109.62424 * 301.25364 * 7 6 5 35 35 H 1.09001 * 109.58368 * 185.72049 * 8 7 6 36 36 H 1.08999 * 109.58634 * 65.44156 * 8 7 6 37 37 H 0.97005 * 120.00122 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.58875 * 66.18090 * 18 9 8 39 39 H 1.09002 * 109.58398 * 186.45872 * 18 9 8 40 40 H 1.09003 * 109.49797 * 58.68004 * 19 6 5 41 41 H 1.08996 * 109.53085 * 298.59899 * 19 6 5 42 42 H 1.09005 * 110.48886 * 339.59475 * 22 20 3 43 43 H 1.09003 * 110.49351 * 102.24788 * 22 20 3 44 44 H 1.09002 * 109.88262 * 117.39490 * 23 22 20 45 45 H 1.09008 * 109.87833 * 238.54288 * 23 22 20 46 46 H 1.09001 * 110.65133 * 201.48468 * 25 24 23 47 47 H 1.08998 * 110.59733 * 78.47609 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6105 1.9797 -0.8456 5 7 1.6438 2.1019 1.2515 6 6 1.5431 3.5563 1.0712 7 6 0.1495 3.9091 0.5450 8 6 0.0583 5.4229 0.3290 9 7 0.4253 6.1047 1.5777 10 6 -0.4109 7.0335 2.1373 11 1 -0.4626 7.1362 3.2112 12 6 -1.1921 7.8433 1.3243 13 7 -2.2120 8.5002 1.8348 14 14 -0.7957 8.0007 -0.4944 15 1 -1.5327 6.9588 -1.2537 16 1 -1.2036 9.3452 -0.9753 17 1 0.6642 7.8233 -0.7000 18 6 1.7068 5.7712 2.2144 19 6 1.7787 4.2539 2.4128 20 6 3.5656 1.4440 -0.1165 21 1 3.9604 2.4552 -0.0177 22 6 4.0184 0.8020 -1.4504 23 6 5.2417 -0.0513 -1.0627 24 8 5.4714 0.1448 0.3426 25 6 4.2014 0.4971 0.9330 26 1 -0.3634 -1.0248 0.0756 27 1 -0.3633 0.5780 0.8498 28 1 -0.3634 0.4471 -0.9253 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8898 31 1 2.2826 1.8736 1.9984 32 1 2.2942 3.8862 0.3535 33 1 -0.6010 3.5995 1.2724 34 1 -0.0257 3.3955 -0.4003 35 1 -0.9610 5.6917 0.0519 36 1 0.7433 5.7207 -0.4648 37 1 -2.7581 9.0658 1.2666 38 1 2.5278 6.0954 1.5749 39 1 1.7763 6.2718 3.1801 40 1 2.7627 3.9832 2.7957 41 1 1.0135 3.9434 3.1242 42 1 3.2278 0.1722 -1.8584 43 1 4.3024 1.5722 -2.1676 44 1 5.0378 -1.1034 -1.2617 45 1 6.1144 0.2728 -1.6298 46 1 4.3485 1.0168 1.8797 47 1 3.5842 -0.3904 1.0730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610813846.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:57 Heat of formation + Delta-G solvation = -32.476575 kcal Electronic energy + Delta-G solvation = -23835.370451 eV Core-core repulsion = 20632.128046 eV Total energy + Delta-G solvation = -3203.242405 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.22262 -38.28130 -36.38390 -33.60025 -31.76007 -31.65396 -30.36644 -29.92559 -28.73628 -25.49065 -24.15603 -23.31433 -22.75789 -22.02676 -21.34550 -19.57181 -19.31858 -16.80826 -16.71963 -16.42605 -15.78288 -15.29643 -15.01783 -14.68872 -14.20343 -13.99893 -13.94153 -13.67425 -13.56898 -13.16514 -12.86055 -12.56821 -12.38352 -12.02887 -11.78765 -11.78220 -11.75925 -11.54881 -11.30067 -11.09720 -10.88803 -10.80137 -10.75990 -10.52615 -10.44030 -10.10543 -9.85481 -9.79380 -9.69323 -9.48665 -8.60340 -8.26167 -6.87159 -5.93739 -3.35882 3.32510 3.47498 3.51232 3.66640 4.04851 4.41969 4.48388 4.53951 4.62727 4.79662 4.86024 4.98138 5.02784 5.08524 5.24315 5.28144 5.34822 5.38113 5.45373 5.48343 5.52528 5.56510 5.63851 5.70510 5.73325 5.76780 5.91176 5.96793 6.06695 6.08689 6.12068 6.19923 6.34736 6.38912 6.42639 6.45385 6.59868 6.63360 6.69431 6.79495 6.99760 7.26372 7.50447 8.04284 8.37013 8.97167 9.73258 10.14035 11.22520 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.004185 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.177814 B = 6689.573503 C = 6833.566366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.097 3.903 4 H 0.081 0.919 5 N -0.676 5.676 6 C 0.096 3.904 7 C -0.116 4.116 8 C 0.126 3.874 9 N -0.605 5.605 10 C -0.260 4.260 11 H 0.083 0.917 12 C 0.027 3.973 13 N -0.911 5.911 14 Si 0.887 3.113 15 H -0.287 1.287 16 H -0.303 1.303 17 H -0.272 1.272 18 C 0.151 3.849 19 C -0.135 4.135 20 C -0.152 4.152 21 H 0.084 0.916 22 C -0.152 4.152 23 C 0.048 3.952 24 O -0.381 6.381 25 C 0.046 3.954 26 H 0.044 0.956 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.335 0.665 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.019 0.981 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 -18.451 -5.683 22.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.014 4.014 4 H 0.099 0.901 5 N -0.306 5.306 6 C -0.013 4.013 7 C -0.156 4.156 8 C 0.000 4.000 9 N -0.329 5.329 10 C -0.389 4.389 11 H 0.100 0.900 12 C -0.172 4.172 13 N -0.554 5.554 14 Si 0.718 3.282 15 H -0.215 1.215 16 H -0.231 1.231 17 H -0.197 1.197 18 C 0.024 3.976 19 C -0.175 4.175 20 C -0.173 4.173 21 H 0.102 0.898 22 C -0.190 4.190 23 C -0.029 4.029 24 O -0.300 6.300 25 C -0.030 4.030 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.154 0.846 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.059 -18.435 -5.671 22.233 hybrid contribution 0.902 0.467 -1.339 1.681 sum 11.962 -17.968 -7.011 22.695 Atomic orbital electron populations 1.21672 0.95028 1.00815 1.02746 1.21632 0.96948 0.95370 1.01227 1.21575 0.90146 0.95799 0.93843 0.90058 1.60682 1.54592 1.09447 1.05915 1.21462 0.97329 0.85496 0.97021 1.22013 0.96270 0.97321 1.00001 1.21356 0.99281 0.90513 0.88897 1.44311 1.17553 1.45271 1.25780 1.18900 1.16891 1.10390 0.92724 0.89976 1.25414 0.97373 0.96595 0.97855 1.69798 1.17227 1.32480 1.35918 0.86859 0.78832 0.75838 0.86668 1.21484 1.23142 1.19696 1.20893 0.87821 0.91655 0.97230 1.22205 1.00309 0.98440 0.96501 1.23490 0.98325 1.00318 0.95135 0.89766 1.23036 0.98171 0.99844 0.97989 1.23131 0.98100 0.98885 0.82787 1.88864 1.30149 1.90616 1.20323 1.23773 0.84735 0.97716 0.96774 0.93729 0.90829 0.93449 0.92211 0.91791 0.84604 0.94558 0.91153 0.93309 0.91031 0.96287 0.92757 0.96332 0.91727 0.93156 0.91052 0.89996 0.90611 0.92530 0.90133 0.89250 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.85 37.16 0.37 -1.13 16 2 C -0.11 -1.05 4.84 -26.73 -0.13 -1.18 16 3 C 0.10 1.01 1.69 -67.71 -0.11 0.90 16 4 H 0.08 0.96 7.18 -51.93 -0.37 0.59 16 5 N -0.68 -8.15 5.43 -99.67 -0.54 -8.69 16 6 C 0.10 1.44 2.25 -67.65 -0.15 1.28 16 7 C -0.12 -2.06 5.59 -26.59 -0.15 -2.20 16 8 C 0.13 2.74 4.20 -3.71 -0.02 2.72 16 9 N -0.61 -14.39 2.69 -172.32 -0.46 -14.85 16 10 C -0.26 -7.33 10.01 -15.06 -0.15 -7.48 16 11 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 12 C 0.03 0.78 5.27 -17.43 -0.09 0.69 16 13 N -0.91 -28.14 13.97 55.49 0.78 -27.37 16 14 Si 0.89 22.66 24.35 -169.99 -4.14 18.52 16 15 H -0.29 -7.07 6.63 56.52 0.37 -6.69 16 16 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 17 H -0.27 -6.84 6.69 56.52 0.38 -6.47 16 18 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 19 C -0.13 -2.14 5.35 -26.61 -0.14 -2.28 16 20 C -0.15 -1.48 2.98 -88.62 -0.26 -1.74 16 21 H 0.08 0.94 7.56 -51.93 -0.39 0.55 16 22 C -0.15 -1.28 6.38 -25.20 -0.16 -1.44 16 23 C 0.05 0.42 7.70 37.73 0.29 0.71 16 24 O -0.38 -4.33 11.52 -35.23 -0.41 -4.74 16 25 C 0.05 0.45 6.33 38.21 0.24 0.69 16 26 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.89 7.63 -51.93 -0.40 0.49 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 6.17 -51.93 -0.32 0.17 16 30 H 0.06 0.57 6.24 -51.94 -0.32 0.25 16 31 H 0.34 3.70 7.11 -39.29 -0.28 3.42 16 32 H 0.04 0.56 7.23 -51.93 -0.38 0.19 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.05 0.79 7.50 -51.93 -0.39 0.40 16 35 H 0.07 1.72 4.94 -51.93 -0.26 1.46 16 36 H 0.02 0.42 6.97 -51.93 -0.36 0.06 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 40 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 0.62 6.00 -51.93 -0.31 0.31 16 43 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16 46 H 0.09 0.82 7.84 -51.93 -0.41 0.42 16 47 H 0.07 0.63 5.58 -51.93 -0.29 0.34 16 LS Contribution 342.81 15.07 5.17 5.17 Total: -1.00 -30.46 342.81 -8.41 -38.86 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.30 Total: 0.66 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.50 Total: -7.55 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.23 Total: -50.92 kcal Atomic # 8 Polarization: -4.33 SS G_CDS: -0.41 Total: -4.74 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.14 Total: 18.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.46 -8.41 -38.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610813846.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.385 kcal (2) G-P(sol) polarization free energy of solvation -30.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds