Wall clock time and date at job start Tue Mar 31 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47251 * 2 1 4 4 H 1.09002 * 109.47352 * 305.00386 * 3 2 1 5 5 C 1.53000 * 109.47072 * 65.00406 * 3 2 1 6 6 C 1.52997 * 109.47372 * 185.00371 * 3 2 1 7 7 H 1.09002 * 109.46895 * 300.00295 * 6 3 2 8 8 C 1.52994 * 109.47541 * 180.02562 * 6 3 2 9 9 C 1.50701 * 109.47348 * 59.99825 * 6 3 2 10 10 O 1.21286 * 119.99545 * 0.02562 * 9 6 3 11 11 N 1.34777 * 120.00306 * 180.02562 * 9 6 3 12 12 C 1.46500 * 119.99730 * 180.02562 * 11 9 6 13 13 C 1.53045 * 109.45772 * 154.99987 * 12 11 9 14 14 C 1.53184 * 109.31045 * 181.38140 * 13 12 11 15 15 N 1.46928 * 108.89946 * 305.29664 * 14 13 12 16 16 C 1.36937 * 120.62751 * 233.68087 * 15 14 13 17 17 H 1.07999 * 120.00448 * 27.38666 * 16 15 14 18 18 C 1.38820 * 119.99269 * 207.39032 * 16 15 14 19 19 N 1.31613 * 120.00097 * 17.25596 * 18 16 15 20 20 Si 1.86807 * 119.99669 * 197.25602 * 18 16 15 21 21 H 1.48497 * 109.46957 * 60.00245 * 20 18 16 22 22 H 1.48494 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47157 * 300.00224 * 20 18 16 24 24 C 1.47200 * 118.55359 * 53.53256 * 15 14 13 25 25 C 1.53036 * 109.45844 * 275.06605 * 12 11 9 26 26 H 1.09006 * 109.46695 * 299.99695 * 1 2 3 27 27 H 1.08995 * 109.47117 * 59.99271 * 1 2 3 28 28 H 1.09001 * 109.47166 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46695 * 240.00304 * 2 1 3 30 30 H 1.08995 * 109.47117 * 120.00729 * 2 1 3 31 31 H 1.09002 * 109.47048 * 59.99795 * 5 3 2 32 32 H 1.09001 * 109.47243 * 180.02562 * 5 3 2 33 33 H 1.08999 * 109.47040 * 299.99831 * 5 3 2 34 34 H 1.08996 * 109.47374 * 180.02562 * 8 6 3 35 35 H 1.09002 * 109.46982 * 299.99892 * 8 6 3 36 36 H 1.09000 * 109.47214 * 59.99735 * 8 6 3 37 37 H 0.96999 * 119.99587 * 0.02562 * 11 9 6 38 38 H 1.08993 * 109.45309 * 35.03494 * 12 11 9 39 39 H 1.09004 * 109.49609 * 61.43436 * 13 12 11 40 40 H 1.09000 * 109.49498 * 301.33269 * 13 12 11 41 41 H 1.09005 * 109.58718 * 65.15681 * 14 13 12 42 42 H 1.09001 * 109.58894 * 185.43430 * 14 13 12 43 43 H 0.97008 * 119.99917 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.53557 * 186.67857 * 24 15 14 45 45 H 1.09002 * 109.67524 * 66.37760 * 24 15 14 46 46 H 1.09007 * 109.49849 * 298.56974 * 25 12 11 47 47 H 1.09005 * 109.50017 * 58.66716 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6354 2.1265 1.3074 6 6 3.5648 1.4443 -0.1258 7 1 3.9995 0.9052 0.7160 8 6 4.0750 2.8867 -0.1252 9 6 3.9635 0.7706 -1.4135 10 8 3.1118 0.3325 -2.1576 11 7 5.2664 0.6548 -1.7383 12 6 5.6538 0.0003 -2.9904 13 6 7.0248 0.5171 -3.4329 14 6 7.4110 -0.1435 -4.7599 15 7 7.3412 -1.6028 -4.6031 16 6 8.4150 -2.3908 -4.9213 17 1 9.4159 -1.9897 -4.8610 18 6 8.2168 -3.7052 -5.3214 19 7 7.0265 -4.0987 -5.7221 20 14 9.6396 -4.9153 -5.2912 21 1 10.1568 -5.0366 -3.9045 22 1 9.1701 -6.2432 -5.7616 23 1 10.7227 -4.4283 -6.1826 24 6 6.0943 -2.1968 -4.0940 25 6 5.7227 -1.5132 -2.7745 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.0700 1.5873 2.1492 32 1 1.9984 3.1543 1.3072 33 1 0.5491 2.1252 1.3970 34 1 5.1612 2.8880 -0.2153 35 1 3.6403 3.4262 -0.9667 36 1 3.7867 3.3737 0.8064 37 1 5.9476 1.0049 -1.1430 38 1 4.9156 0.2240 -3.7604 39 1 7.7682 0.2718 -2.6744 40 1 6.9810 1.5983 -3.5639 41 1 6.7198 0.1735 -5.5408 42 1 8.4262 0.1467 -5.0307 43 1 6.8881 -5.0172 -6.0021 44 1 6.2415 -3.2634 -3.9242 45 1 5.2945 -2.0494 -4.8198 46 1 6.4784 -1.7393 -2.0221 47 1 4.7523 -1.8771 -2.4369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611539672.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:12 Heat of formation + Delta-G solvation = -44.712848 kcal Electronic energy + Delta-G solvation = -23351.336708 eV Core-core repulsion = 20147.563698 eV Total energy + Delta-G solvation = -3203.773010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.13786 -37.74978 -36.32491 -34.40329 -32.79730 -31.75664 -30.02545 -29.47257 -28.53343 -25.99747 -25.00275 -23.05808 -22.20561 -21.72113 -20.35154 -19.80875 -19.06172 -17.18736 -16.61336 -15.93428 -15.16563 -14.91087 -14.85539 -14.41917 -13.84853 -13.70333 -13.49852 -13.48402 -13.02275 -12.86658 -12.77733 -12.45655 -12.42241 -12.08540 -11.84028 -11.73426 -11.50164 -11.46644 -11.10791 -10.91474 -10.71114 -10.67452 -10.62572 -10.47925 -10.33187 -10.24510 -10.02273 -9.73333 -9.66507 -9.19948 -8.64531 -8.39965 -6.68184 -5.77340 -3.19727 2.87032 3.38438 3.43690 3.45168 3.46103 4.50345 4.51272 4.71883 4.73170 5.06190 5.20604 5.23022 5.30784 5.35437 5.37932 5.42639 5.47441 5.52971 5.55095 5.64887 5.65955 5.76046 5.81141 5.85316 5.93326 5.97593 6.08878 6.09934 6.18731 6.25587 6.35825 6.40024 6.45604 6.58068 6.65382 6.66484 6.78877 6.93664 6.98991 7.38974 7.68736 7.79693 7.80061 8.45410 8.50805 9.21555 9.85234 10.42351 11.31310 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028652 B = 0.003606 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.996918 B = 7762.879906 C = 8322.745720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C -0.070 4.070 4 H 0.075 0.925 5 C -0.150 4.150 6 C -0.109 4.109 7 H 0.093 0.907 8 C -0.145 4.145 9 C 0.513 3.487 10 O -0.535 6.535 11 N -0.725 5.725 12 C 0.150 3.850 13 C -0.139 4.139 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.255 4.255 17 H 0.066 0.934 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.173 3.827 25 C -0.145 4.145 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.093 0.907 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.255 0.745 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.053 0.947 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.533 13.204 14.059 20.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.089 4.089 4 H 0.093 0.907 5 C -0.207 4.207 6 C -0.131 4.131 7 H 0.111 0.889 8 C -0.202 4.202 9 C 0.299 3.701 10 O -0.412 6.412 11 N -0.375 5.375 12 C 0.047 3.953 13 C -0.179 4.179 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.047 3.953 25 C -0.186 4.186 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.226 0.774 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.186 12.704 13.422 20.213 hybrid contribution 1.073 -0.532 0.365 1.252 sum -7.113 12.172 13.787 19.719 Atomic orbital electron populations 1.21757 0.96285 1.01231 1.01204 1.21843 0.95768 0.96181 1.03355 1.20928 0.92395 0.97325 0.98206 0.90652 1.21964 1.01481 1.00231 0.97069 1.21400 0.97949 0.97368 0.96340 0.88900 1.21823 1.01053 0.94554 1.02789 1.20579 0.82632 0.79199 0.87706 1.90642 1.49692 1.48768 1.52091 1.46369 1.07088 1.60054 1.23993 1.21016 0.96464 0.92992 0.84820 1.22328 0.95654 0.98818 1.01050 1.20828 0.98874 0.85860 0.92318 1.44148 1.13121 0.99964 1.74322 1.19134 0.86399 0.93514 1.39429 0.91674 1.25045 0.96655 0.99137 0.98767 1.70027 1.21692 1.17086 1.45723 0.86369 0.81913 0.80592 0.77882 1.21068 1.21622 1.20892 1.20801 0.86961 0.98444 0.89126 1.22542 1.00109 0.94207 1.01696 0.93246 0.92861 0.93125 0.88863 0.93042 0.92813 0.92578 0.92324 0.92234 0.92125 0.91348 0.77357 0.90148 0.91937 0.92709 0.96264 0.92426 0.93531 0.89275 0.96160 0.92786 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 37.16 0.36 -1.19 16 2 C -0.13 -1.60 5.14 -26.73 -0.14 -1.73 16 3 C -0.07 -0.73 1.61 -90.62 -0.15 -0.88 16 4 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 5 C -0.15 -1.21 8.59 37.16 0.32 -0.89 16 6 C -0.11 -1.13 2.32 -91.78 -0.21 -1.34 16 7 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 8 C -0.14 -1.18 8.74 37.15 0.32 -0.86 16 9 C 0.51 7.35 6.80 -10.98 -0.07 7.27 16 10 O -0.53 -9.73 13.33 5.55 0.07 -9.66 16 11 N -0.73 -10.06 4.97 -53.77 -0.27 -10.33 16 12 C 0.15 2.62 2.41 -67.89 -0.16 2.46 16 13 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 14 C 0.15 3.07 6.50 -3.71 -0.02 3.05 16 15 N -0.59 -14.91 3.01 -172.10 -0.52 -15.43 16 16 C -0.26 -7.01 9.59 -15.06 -0.14 -7.15 16 17 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 19 N -0.90 -26.47 11.18 55.49 0.62 -25.85 16 20 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.17 4.25 5.33 -3.56 -0.02 4.23 16 25 C -0.15 -2.92 5.65 -26.61 -0.15 -3.07 16 26 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.09 1.42 5.42 -51.93 -0.28 1.14 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 33 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 34 H 0.06 0.44 7.57 -51.93 -0.39 0.04 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 37 H 0.39 4.35 8.02 -40.82 -0.33 4.02 16 38 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.09 2.44 6.04 -51.93 -0.31 2.13 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -30.85 356.77 -8.56 -39.41 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.51 Total: 2.36 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.30 Total: -2.57 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.16 Total: -51.61 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.85 -8.56 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539672.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.305 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds