Wall clock time and date at job start Tue Mar 31 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46636 * 2 1 4 4 H 1.09008 * 109.46952 * 55.00444 * 3 2 1 5 5 C 1.52998 * 109.47738 * 295.00139 * 3 2 1 6 6 C 1.53000 * 109.46710 * 175.00029 * 3 2 1 7 7 H 1.08999 * 109.47298 * 60.00316 * 6 3 2 8 8 C 1.53006 * 109.47060 * 180.02562 * 6 3 2 9 9 C 1.50705 * 109.47527 * 300.00144 * 6 3 2 10 10 O 1.21279 * 119.99297 * 0.02562 * 9 6 3 11 11 N 1.34770 * 120.00140 * 179.97438 * 9 6 3 12 12 C 1.46500 * 119.99846 * 180.02562 * 11 9 6 13 13 C 1.53042 * 109.45810 * 205.00257 * 12 11 9 14 14 C 1.53198 * 109.31086 * 178.61534 * 13 12 11 15 15 N 1.46926 * 108.89429 * 54.55921 * 14 13 12 16 16 C 1.36937 * 120.62571 * 126.46041 * 15 14 13 17 17 H 1.07997 * 120.00221 * 332.73438 * 16 15 14 18 18 C 1.38818 * 119.99512 * 152.73441 * 16 15 14 19 19 N 1.31619 * 119.99922 * 159.41180 * 18 16 15 20 20 Si 1.86800 * 120.00017 * 339.41150 * 18 16 15 21 21 H 1.48500 * 109.47149 * 92.90848 * 20 18 16 22 22 H 1.48502 * 109.46858 * 212.90584 * 20 18 16 23 23 H 1.48494 * 109.47186 * 332.90612 * 20 18 16 24 24 C 1.46952 * 118.71485 * 306.64327 * 15 14 13 25 25 C 1.53034 * 109.46260 * 84.93401 * 12 11 9 26 26 H 1.08998 * 109.47360 * 59.99799 * 1 2 3 27 27 H 1.09009 * 109.46840 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47309 * 299.99190 * 1 2 3 29 29 H 1.09002 * 109.46640 * 240.00370 * 2 1 3 30 30 H 1.08998 * 109.47360 * 120.00201 * 2 1 3 31 31 H 1.09000 * 109.46830 * 59.99833 * 5 3 2 32 32 H 1.08996 * 109.47306 * 179.97438 * 5 3 2 33 33 H 1.08999 * 109.46894 * 300.00066 * 5 3 2 34 34 H 1.08999 * 109.47130 * 300.00465 * 8 6 3 35 35 H 1.08999 * 109.47076 * 59.99850 * 8 6 3 36 36 H 1.09001 * 109.46935 * 180.02562 * 8 6 3 37 37 H 0.97000 * 120.00196 * 0.02562 * 11 9 6 38 38 H 1.09001 * 109.46248 * 324.97132 * 12 11 9 39 39 H 1.08993 * 109.49979 * 58.66457 * 13 12 11 40 40 H 1.08993 * 109.49864 * 298.56313 * 13 12 11 41 41 H 1.09004 * 109.58728 * 174.42371 * 14 13 12 42 42 H 1.09000 * 109.58513 * 294.70045 * 14 13 12 43 43 H 0.96996 * 120.00085 * 179.97438 * 19 18 16 44 44 H 1.08999 * 109.46884 * 293.57037 * 24 15 14 45 45 H 1.09007 * 109.71303 * 173.28716 * 24 15 14 46 46 H 1.09004 * 109.49724 * 301.33190 * 25 12 11 47 47 H 1.08996 * 109.49993 * 61.42953 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 1.6352 2.1267 -1.3073 6 6 3.5648 1.4444 0.1257 7 1 3.9994 0.9054 -0.7161 8 6 4.0747 2.8870 0.1264 9 6 3.9636 0.7706 1.4134 10 8 3.1120 0.3317 2.1570 11 7 5.2665 0.6549 1.7380 12 6 5.6541 -0.0006 2.9895 13 6 7.0249 0.5161 3.4324 14 6 7.4114 -0.1456 4.7589 15 7 7.3385 -1.6046 4.6018 16 6 8.4102 -2.3950 4.9213 17 1 9.4119 -1.9955 4.8643 18 6 8.2088 -3.7098 5.3185 19 7 9.1927 -4.5802 5.2362 20 14 6.5414 -4.2439 5.9697 21 1 5.7232 -4.7820 4.8534 22 1 6.7267 -5.2971 7.0001 23 1 5.8489 -3.0772 6.5733 24 6 6.0951 -2.1986 4.0914 25 6 5.7234 -1.5139 2.7723 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 0.5489 2.1253 -1.3968 32 1 1.9980 3.1545 -1.3070 33 1 2.0698 1.5877 -2.1491 34 1 3.7862 3.3747 -0.8047 35 1 3.6400 3.4256 0.9684 36 1 5.1611 2.8883 0.2155 37 1 5.9476 1.0056 1.1430 38 1 4.9159 0.2220 3.7599 39 1 6.9809 1.5972 3.5644 40 1 7.7683 0.2717 2.6738 41 1 8.4274 0.1427 5.0287 42 1 6.7216 0.1726 5.5406 43 1 9.0521 -5.4988 5.5140 44 1 5.2964 -2.0498 4.8181 45 1 6.2400 -3.2655 3.9211 46 1 4.7530 -1.8778 2.4345 47 1 6.4790 -1.7393 2.0198 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611539673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:16 Heat of formation + Delta-G solvation = -39.243651 kcal Electronic energy + Delta-G solvation = -23456.153709 eV Core-core repulsion = 20252.617861 eV Total energy + Delta-G solvation = -3203.535848 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26562 -38.02458 -36.48053 -34.57602 -32.85379 -31.87184 -30.40523 -30.02742 -28.64917 -26.07476 -25.00603 -23.05222 -22.83115 -21.75681 -20.45343 -20.01911 -19.29669 -17.25055 -16.71692 -16.17616 -15.24563 -15.17206 -15.01617 -14.39084 -14.18865 -13.81343 -13.76165 -13.63430 -13.18485 -12.94416 -12.89094 -12.65845 -12.44385 -12.19923 -11.92416 -11.88830 -11.80855 -11.75517 -11.57192 -11.04656 -10.84842 -10.72777 -10.69410 -10.57823 -10.54558 -10.14965 -10.04208 -9.86028 -9.48979 -9.34394 -8.77468 -8.59061 -6.99050 -5.94852 -3.30870 2.75189 3.29877 3.35442 3.51073 3.55073 4.44032 4.54589 4.62959 4.65946 4.95293 4.99283 5.12021 5.15931 5.20487 5.28806 5.30652 5.32626 5.42442 5.46547 5.48816 5.59321 5.67043 5.69601 5.74968 5.82708 5.87522 5.91222 6.02217 6.03742 6.09946 6.14031 6.15496 6.32119 6.32732 6.43018 6.50057 6.56706 6.64552 6.68252 6.80151 6.92408 7.66236 7.95978 8.32469 8.37992 8.93668 9.72267 10.09835 11.21021 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026010 B = 0.004018 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.252343 B = 6966.541587 C = 7692.297580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C -0.070 4.070 4 H 0.075 0.925 5 C -0.151 4.151 6 C -0.109 4.109 7 H 0.094 0.906 8 C -0.145 4.145 9 C 0.514 3.486 10 O -0.536 6.536 11 N -0.725 5.725 12 C 0.150 3.850 13 C -0.140 4.140 14 C 0.152 3.848 15 N -0.607 5.607 16 C -0.261 4.261 17 H 0.086 0.914 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.882 3.118 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.129 3.871 25 C -0.140 4.140 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.024 0.976 43 H 0.263 0.737 44 H 0.027 0.973 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.327 15.125 -13.212 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.089 4.089 4 H 0.093 0.907 5 C -0.208 4.208 6 C -0.130 4.130 7 H 0.112 0.888 8 C -0.202 4.202 9 C 0.300 3.700 10 O -0.413 6.413 11 N -0.375 5.375 12 C 0.047 3.953 13 C -0.180 4.180 14 C 0.025 3.975 15 N -0.330 5.330 16 C -0.389 4.389 17 H 0.103 0.897 18 C -0.175 4.175 19 N -0.552 5.552 20 Si 0.712 3.288 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.180 4.180 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.092 0.908 46 H 0.076 0.924 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.852 14.638 -12.609 23.205 hybrid contribution -0.509 -0.338 -0.012 0.611 sum -13.362 14.301 -12.621 23.288 Atomic orbital electron populations 1.21758 0.96255 1.01237 1.01246 1.21844 0.95801 0.96190 1.03307 1.20933 0.92347 0.97310 0.98274 0.90652 1.21962 1.01515 1.00260 0.97027 1.21406 0.97992 0.97424 0.96219 0.88783 1.21828 1.01087 0.94469 1.02864 1.20613 0.82540 0.79096 0.87738 1.90636 1.49718 1.48794 1.52141 1.46314 1.07213 1.60007 1.23926 1.20968 0.96727 0.92453 0.85190 1.22324 0.95592 0.99160 1.00942 1.20853 0.99770 0.84227 0.92621 1.44394 1.12729 1.01485 1.74424 1.18914 0.86622 0.93310 1.40089 0.89656 1.25268 0.96800 0.96253 0.99163 1.69834 1.32420 1.03290 1.49606 0.86967 0.85187 0.77885 0.78738 1.21594 1.23111 1.19483 1.21312 0.88554 0.97675 0.92187 1.22375 1.00772 0.94577 1.00301 0.93183 0.93136 0.92871 0.92991 0.88970 0.92299 0.92535 0.92770 0.91279 0.92111 0.92176 0.77085 0.90010 0.92194 0.91430 0.91421 0.95761 0.92758 0.95545 0.90796 0.92432 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 37.16 0.36 -1.11 16 2 C -0.13 -1.51 5.14 -26.73 -0.14 -1.64 16 3 C -0.07 -0.69 1.61 -90.62 -0.15 -0.83 16 4 H 0.08 0.85 8.10 -51.92 -0.42 0.42 16 5 C -0.15 -1.13 8.60 37.16 0.32 -0.81 16 6 C -0.11 -1.05 2.32 -91.77 -0.21 -1.26 16 7 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.14 -1.09 8.74 37.16 0.32 -0.77 16 9 C 0.51 6.85 6.80 -10.99 -0.07 6.78 16 10 O -0.54 -9.15 13.33 5.56 0.07 -9.08 16 11 N -0.72 -9.25 4.97 -53.77 -0.27 -9.52 16 12 C 0.15 2.41 2.41 -67.89 -0.16 2.25 16 13 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 14 C 0.15 2.92 6.51 -3.71 -0.02 2.89 16 15 N -0.61 -14.42 2.78 -172.29 -0.48 -14.89 16 16 C -0.26 -7.29 10.04 -15.06 -0.15 -7.45 16 17 H 0.09 2.52 8.05 -52.49 -0.42 2.09 16 18 C 0.02 0.70 5.23 -17.43 -0.09 0.61 16 19 N -0.91 -27.98 13.97 55.49 0.78 -27.21 16 20 Si 0.88 22.85 24.35 -169.99 -4.14 18.72 16 21 H -0.29 -7.27 6.62 56.52 0.37 -6.90 16 22 H -0.30 -7.95 7.11 56.52 0.40 -7.54 16 23 H -0.27 -6.92 6.63 56.52 0.37 -6.54 16 24 C 0.13 2.90 4.20 -3.70 -0.02 2.89 16 25 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 26 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 27 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.33 5.41 -51.93 -0.28 1.04 16 31 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 32 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.40 7.57 -51.93 -0.39 0.01 16 37 H 0.40 3.97 8.02 -40.82 -0.33 3.65 16 38 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.07 1.27 7.93 -51.93 -0.41 0.86 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 44 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 45 H 0.07 1.83 4.50 -51.92 -0.23 1.59 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 350.32 15.07 5.28 5.28 Total: -1.00 -31.89 350.32 -7.51 -39.40 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.44 Total: 0.83 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: -0.31 Total: -3.52 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.03 Total: -51.62 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.07 Total: -9.08 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.14 Total: 18.72 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.89 -7.51 -39.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.157 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds