Wall clock time and date at job start Tue Mar 31 2020 05:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47606 * 2 1 4 4 H 1.08999 * 109.46829 * 54.99334 * 3 2 1 5 5 C 1.53002 * 109.46790 * 295.00090 * 3 2 1 6 6 C 1.52990 * 109.47483 * 174.99790 * 3 2 1 7 7 H 1.08999 * 109.47461 * 59.99931 * 6 3 2 8 8 C 1.53002 * 109.47352 * 299.99956 * 6 3 2 9 9 C 1.50704 * 109.47186 * 179.97438 * 6 3 2 10 10 O 1.21278 * 120.00187 * 0.02562 * 9 6 3 11 11 N 1.34778 * 119.99864 * 179.97438 * 9 6 3 12 12 C 1.46504 * 120.00006 * 179.97438 * 11 9 6 13 13 C 1.53040 * 109.46129 * 275.07576 * 12 11 9 14 14 C 1.53193 * 109.31327 * 178.61128 * 13 12 11 15 15 N 1.46932 * 108.77146 * 54.63360 * 14 13 12 16 16 C 1.36940 * 120.63034 * 126.41336 * 15 14 13 17 17 H 1.07998 * 119.99688 * 332.60963 * 16 15 14 18 18 C 1.38810 * 119.99994 * 152.60157 * 16 15 14 19 19 N 1.31618 * 120.00009 * 159.34391 * 18 16 15 20 20 Si 1.86803 * 120.00046 * 339.35025 * 18 16 15 21 21 H 1.48494 * 109.47328 * 92.93891 * 20 18 16 22 22 H 1.48504 * 109.46905 * 212.94212 * 20 18 16 23 23 H 1.48497 * 109.46935 * 332.93806 * 20 18 16 24 24 C 1.46924 * 118.73847 * 306.38878 * 15 14 13 25 25 C 1.53037 * 109.45918 * 155.00034 * 12 11 9 26 26 H 1.08998 * 109.47365 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46831 * 300.00058 * 1 2 3 28 28 H 1.08999 * 109.46853 * 60.00386 * 1 2 3 29 29 H 1.09006 * 109.47341 * 239.99476 * 2 1 3 30 30 H 1.09003 * 109.46736 * 120.00125 * 2 1 3 31 31 H 1.09000 * 109.47250 * 299.99563 * 5 3 2 32 32 H 1.09002 * 109.47192 * 59.99991 * 5 3 2 33 33 H 1.08998 * 109.46945 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47250 * 300.00058 * 8 6 3 35 35 H 1.08998 * 109.46945 * 59.99825 * 8 6 3 36 36 H 1.09002 * 109.47192 * 179.97438 * 8 6 3 37 37 H 0.96996 * 120.00212 * 0.02562 * 11 9 6 38 38 H 1.09000 * 109.44292 * 35.03306 * 12 11 9 39 39 H 1.09003 * 109.49308 * 298.55876 * 13 12 11 40 40 H 1.09002 * 109.50265 * 58.65673 * 13 12 11 41 41 H 1.08996 * 109.58410 * 294.84556 * 14 13 12 42 42 H 1.08996 * 109.70075 * 174.48359 * 14 13 12 43 43 H 0.97006 * 120.00162 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.58542 * 293.82204 * 24 15 14 45 45 H 1.09004 * 109.70549 * 173.47001 * 24 15 14 46 46 H 1.08990 * 109.50022 * 301.34106 * 25 12 11 47 47 H 1.09004 * 109.49413 * 61.40830 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5648 1.4442 0.1258 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7602 1.4331 9 6 4.0673 2.8650 0.1251 10 8 3.2830 3.7856 0.0336 11 7 5.3882 3.1127 0.2273 12 6 5.8767 4.4939 0.2261 13 6 6.0457 4.9738 -1.2173 14 6 6.5234 6.4293 -1.2147 15 7 7.7424 6.5254 -0.4001 16 6 8.8819 7.0857 -0.9129 17 1 9.0652 7.0586 -1.9769 18 6 9.8010 7.6886 -0.0652 19 7 11.0453 7.8598 -0.4586 20 14 9.2720 8.2567 1.6339 21 1 9.5364 7.1791 2.6207 22 1 10.0384 9.4718 2.0103 23 1 7.8208 8.5711 1.6211 24 6 7.7155 6.0095 0.9753 25 6 7.2244 4.5586 0.9482 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.0700 1.5874 -2.1492 32 1 0.5490 2.1252 -1.3969 33 1 1.9984 3.1542 -1.3072 34 1 3.5350 1.2992 2.2750 35 1 3.6062 -0.2674 1.4332 36 1 5.0560 0.7611 1.5225 37 1 6.0154 2.3766 0.3009 38 1 5.1585 5.1332 0.7395 39 1 6.7822 4.3501 -1.7240 40 1 5.0904 4.9053 -1.7377 41 1 5.7486 7.0673 -0.7896 42 1 6.7396 6.7469 -2.2347 43 1 11.6876 8.2815 0.1336 44 1 7.0379 6.6134 1.5789 45 1 8.7178 6.0481 1.4021 46 1 7.1081 4.1948 1.9690 47 1 7.9496 3.9384 0.4213 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611539674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:19 Heat of formation + Delta-G solvation = -39.236620 kcal Electronic energy + Delta-G solvation = -23310.946781 eV Core-core repulsion = 20107.411239 eV Total energy + Delta-G solvation = -3203.535543 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.25774 -38.03818 -36.61379 -34.57322 -32.71317 -31.81116 -30.43409 -29.97787 -29.25390 -25.35345 -24.65132 -23.89013 -22.87665 -21.80831 -20.47210 -19.91374 -19.34467 -17.24926 -16.62256 -16.14673 -15.28048 -15.25309 -14.87345 -14.45121 -14.18769 -14.15455 -13.81113 -13.56822 -13.22879 -13.06887 -12.91995 -12.53852 -12.45204 -12.09767 -12.05813 -11.91990 -11.82359 -11.68262 -11.43352 -10.96796 -10.92007 -10.82729 -10.72981 -10.61094 -10.54459 -10.26701 -10.11410 -9.81972 -9.50155 -9.35952 -8.76345 -8.63317 -6.99550 -5.95728 -3.31477 2.74741 3.28857 3.30500 3.48556 3.52046 4.44916 4.52157 4.55900 4.65327 4.88854 4.95299 5.00862 5.07139 5.15902 5.30774 5.33681 5.37641 5.40889 5.41817 5.52375 5.58837 5.64625 5.68403 5.77208 5.80362 5.82206 5.85696 5.99070 6.03909 6.04081 6.11900 6.17292 6.26671 6.33618 6.40250 6.48335 6.57704 6.64529 6.65642 6.80009 6.92511 7.66231 7.95451 8.32262 8.37502 8.93255 9.71237 10.09010 11.20277 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.003447 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.744074 B = 8121.131198 C = 8350.411356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.070 4.070 4 H 0.075 0.925 5 C -0.161 4.161 6 C -0.109 4.109 7 H 0.094 0.906 8 C -0.146 4.146 9 C 0.515 3.485 10 O -0.537 6.537 11 N -0.725 5.725 12 C 0.150 3.850 13 C -0.140 4.140 14 C 0.151 3.849 15 N -0.606 5.606 16 C -0.259 4.259 17 H 0.086 0.914 18 C 0.023 3.977 19 N -0.909 5.909 20 Si 0.881 3.119 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.270 1.270 24 C 0.130 3.870 25 C -0.140 4.140 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.396 0.604 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.025 0.975 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.027 0.973 45 H 0.076 0.924 46 H 0.058 0.942 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.553 -17.263 2.573 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.089 4.089 4 H 0.093 0.907 5 C -0.217 4.217 6 C -0.130 4.130 7 H 0.112 0.888 8 C -0.204 4.204 9 C 0.301 3.699 10 O -0.414 6.414 11 N -0.375 5.375 12 C 0.047 3.953 13 C -0.180 4.180 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.176 4.176 19 N -0.552 5.552 20 Si 0.712 3.288 21 H -0.216 1.216 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.003 3.997 25 C -0.180 4.180 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.229 0.771 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.095 0.905 46 H 0.077 0.923 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.942 -16.495 2.520 23.780 hybrid contribution 0.242 -0.072 1.011 1.042 sum -16.700 -16.568 3.530 23.788 Atomic orbital electron populations 1.21806 0.95864 1.01280 1.02086 1.21677 0.96031 0.96362 1.01928 1.20931 0.92303 0.95800 0.99819 0.90657 1.22110 1.00930 1.03032 0.95674 1.21396 0.97708 0.93631 1.00272 0.88794 1.21843 1.01580 1.00898 0.96050 1.20592 0.82321 0.91205 0.75765 1.90626 1.55107 1.46543 1.49150 1.46325 1.07275 1.09449 1.74413 1.20970 0.95682 0.81551 0.97129 1.22367 1.00488 0.99558 0.95627 1.20894 0.88245 0.92390 0.96042 1.44402 1.09355 1.68799 1.10445 1.18934 0.94751 1.30528 0.94516 0.89641 1.25285 0.95646 0.98760 0.97928 1.69838 1.01934 1.45991 1.37400 0.86970 0.78799 0.77788 0.85252 1.21645 1.23116 1.19486 1.21294 0.99988 0.90773 0.87628 1.22335 0.95664 1.00800 0.99197 0.93019 0.92798 0.92404 0.92081 0.91733 0.93653 0.92965 0.89728 0.92091 0.91250 0.92143 0.77058 0.90020 0.91919 0.92316 0.95748 0.91624 0.92768 0.95535 0.90550 0.92329 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.12 -0.92 5.19 -26.73 -0.14 -1.06 16 3 C -0.07 -0.67 1.61 -90.63 -0.15 -0.82 16 4 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 5 C -0.16 -1.73 8.63 37.16 0.32 -1.41 16 6 C -0.11 -1.03 2.32 -91.77 -0.21 -1.24 16 7 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 8 C -0.15 -1.12 8.75 37.16 0.32 -0.79 16 9 C 0.51 6.78 6.83 -10.98 -0.07 6.71 16 10 O -0.54 -8.99 13.32 5.56 0.07 -8.92 16 11 N -0.72 -9.28 4.97 -53.76 -0.27 -9.55 16 12 C 0.15 2.42 2.42 -67.89 -0.16 2.25 16 13 C -0.14 -2.42 5.65 -26.61 -0.15 -2.57 16 14 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 15 N -0.61 -14.40 2.77 -172.32 -0.48 -14.88 16 16 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 17 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 18 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 19 N -0.91 -27.78 13.97 55.49 0.78 -27.01 16 20 Si 0.88 22.34 24.35 -169.99 -4.14 18.20 16 21 H -0.29 -6.99 6.62 56.52 0.37 -6.62 16 22 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 23 H -0.27 -6.78 6.63 56.52 0.37 -6.40 16 24 C 0.13 2.79 4.20 -3.71 -0.02 2.77 16 25 C -0.14 -2.37 5.55 -26.61 -0.15 -2.51 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 6.17 -51.93 -0.32 0.11 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.08 1.16 5.51 -51.93 -0.29 0.87 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.43 6.32 -51.93 -0.33 0.10 16 36 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 37 H 0.40 4.07 8.02 -40.82 -0.33 3.74 16 38 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 45 H 0.08 1.79 4.50 -51.93 -0.23 1.55 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -31.48 350.15 -7.50 -38.98 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.43 Total: 1.09 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.31 Total: -3.20 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.03 Total: -51.43 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.07 Total: -8.92 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.14 Total: 18.20 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.48 -7.50 -38.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.257 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds