Wall clock time and date at job start Tue Mar 31 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47005 * 2 1 4 4 H 1.09001 * 109.47534 * 304.99850 * 3 2 1 5 5 C 1.52998 * 109.47113 * 65.00257 * 3 2 1 6 6 C 1.53002 * 109.47110 * 185.00052 * 3 2 1 7 7 H 1.09000 * 109.47387 * 299.99859 * 6 3 2 8 8 C 1.52998 * 109.47401 * 60.00433 * 6 3 2 9 9 C 1.50705 * 109.47129 * 180.02562 * 6 3 2 10 10 O 1.21281 * 119.99752 * 359.97438 * 9 6 3 11 11 N 1.34778 * 120.00241 * 180.02562 * 9 6 3 12 12 C 1.46497 * 119.99906 * 179.71964 * 11 9 6 13 13 C 1.53036 * 109.46373 * 275.06519 * 12 11 9 14 14 C 1.53191 * 109.31533 * 178.61460 * 13 12 11 15 15 N 1.46922 * 108.77171 * 54.63951 * 14 13 12 16 16 C 1.36936 * 120.63231 * 126.41533 * 15 14 13 17 17 H 1.07999 * 119.99642 * 331.82520 * 16 15 14 18 18 C 1.38812 * 120.00305 * 151.82497 * 16 15 14 19 19 N 1.31620 * 119.99970 * 343.07034 * 18 16 15 20 20 Si 1.86795 * 120.00064 * 163.06763 * 18 16 15 21 21 H 1.48507 * 109.47456 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47398 * 120.00150 * 20 18 16 23 23 H 1.48501 * 109.47444 * 240.00184 * 20 18 16 24 24 C 1.46925 * 118.73920 * 306.39042 * 15 14 13 25 25 C 1.53045 * 109.45561 * 154.99896 * 12 11 9 26 26 H 1.09001 * 109.47468 * 59.99870 * 1 2 3 27 27 H 1.09003 * 109.46933 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47375 * 300.00046 * 1 2 3 29 29 H 1.09000 * 109.47330 * 240.00670 * 2 1 3 30 30 H 1.09001 * 109.47468 * 120.00130 * 2 1 3 31 31 H 1.09003 * 109.47511 * 179.97438 * 5 3 2 32 32 H 1.09007 * 109.47147 * 300.00016 * 5 3 2 33 33 H 1.08995 * 109.47516 * 59.99784 * 5 3 2 34 34 H 1.09002 * 109.46546 * 299.99774 * 8 6 3 35 35 H 1.09000 * 109.47319 * 59.99384 * 8 6 3 36 36 H 1.08996 * 109.47121 * 179.97438 * 8 6 3 37 37 H 0.97001 * 119.99708 * 359.97438 * 11 9 6 38 38 H 1.09002 * 109.46004 * 35.03374 * 12 11 9 39 39 H 1.08994 * 109.49994 * 298.57266 * 13 12 11 40 40 H 1.09002 * 109.49503 * 58.66331 * 13 12 11 41 41 H 1.09002 * 109.58890 * 294.85240 * 14 13 12 42 42 H 1.09003 * 109.70595 * 174.49421 * 14 13 12 43 43 H 0.96999 * 120.00095 * 179.97438 * 19 18 16 44 44 H 1.09005 * 109.58712 * 293.81976 * 24 15 14 45 45 H 1.09004 * 109.70644 * 173.47115 * 24 15 14 46 46 H 1.08996 * 109.50277 * 301.33881 * 25 12 11 47 47 H 1.09007 * 109.49663 * 61.40723 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4444 -0.1257 7 1 3.9994 0.9054 0.7161 8 6 3.9696 0.7605 -1.4331 9 6 4.0671 2.8652 -0.1251 10 8 3.2827 3.7857 -0.0336 11 7 5.3880 3.1131 -0.2273 12 6 5.8757 4.4944 -0.2328 13 6 5.8084 5.0533 -1.6559 14 6 6.2865 6.5087 -1.6519 15 7 7.6228 6.5657 -1.0439 16 6 8.6653 7.1584 -1.7049 17 1 8.6782 7.1793 -2.7846 18 6 9.7057 7.7325 -0.9872 19 7 9.5498 8.0095 0.2900 20 14 11.3268 8.1118 -1.8341 21 1 11.2462 7.7084 -3.2610 22 1 11.6021 9.5685 -1.7468 23 1 12.4210 7.3605 -1.1680 24 6 7.8192 5.9751 0.2870 25 6 7.3239 4.5257 0.2613 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9989 3.1541 1.3076 32 1 0.5488 2.1252 1.3970 33 1 2.0698 1.5875 2.1491 34 1 3.6063 -0.2672 -1.4331 35 1 3.5349 1.2995 -2.2749 36 1 5.0558 0.7622 -1.5228 37 1 6.0153 2.3769 -0.3008 38 1 5.2543 5.1016 0.4254 39 1 6.4490 4.4617 -2.3098 40 1 4.7805 5.0090 -2.0158 41 1 5.5946 7.1190 -1.0715 42 1 6.3341 6.8827 -2.6746 43 1 10.2769 8.4103 0.7917 44 1 7.2523 6.5420 1.0256 45 1 8.8780 5.9949 0.5453 46 1 7.3747 4.1060 1.2660 47 1 7.9502 3.9386 -0.4104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611539675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:22 Heat of formation + Delta-G solvation = -45.404760 kcal Electronic energy + Delta-G solvation = -23220.965119 eV Core-core repulsion = 20017.162106 eV Total energy + Delta-G solvation = -3203.803013 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.14475 -37.77853 -36.46999 -34.41511 -32.66289 -31.69509 -30.10022 -29.46035 -29.09177 -25.30792 -24.59871 -23.91391 -22.25721 -21.82934 -20.34647 -19.73700 -19.12362 -17.16526 -16.51675 -15.88666 -15.21941 -15.02490 -14.83377 -14.35681 -14.16040 -13.72758 -13.58169 -13.44036 -13.16988 -12.97064 -12.76232 -12.38521 -12.35814 -12.04488 -11.93282 -11.69776 -11.46198 -11.36241 -11.12443 -10.93633 -10.76277 -10.72236 -10.67383 -10.55880 -10.43136 -10.25787 -10.01809 -9.80750 -9.61198 -9.24555 -8.64459 -8.45255 -6.68352 -5.79798 -3.22061 2.84811 3.35789 3.42311 3.44506 3.46736 4.49202 4.51040 4.63773 4.71096 4.95082 5.06431 5.13358 5.29681 5.35461 5.41750 5.45798 5.47168 5.52742 5.56720 5.60805 5.65018 5.71390 5.82129 5.85614 5.89531 5.90354 6.04868 6.07887 6.10892 6.28070 6.31521 6.34932 6.51913 6.54435 6.57626 6.63872 6.80651 6.96845 7.00162 7.31928 7.60380 7.77327 7.81550 8.44325 8.48766 9.20596 9.83832 10.41017 11.29122 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.003173 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.921068 B = 8821.140215 C = 8922.249332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.070 4.070 4 H 0.075 0.925 5 C -0.160 4.160 6 C -0.109 4.109 7 H 0.093 0.907 8 C -0.146 4.146 9 C 0.514 3.486 10 O -0.538 6.538 11 N -0.724 5.724 12 C 0.151 3.849 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.175 3.825 25 C -0.146 4.146 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.394 0.606 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.253 0.747 44 H 0.020 0.980 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.363 -17.356 0.104 21.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.088 4.088 4 H 0.094 0.906 5 C -0.217 4.217 6 C -0.130 4.130 7 H 0.111 0.889 8 C -0.203 4.203 9 C 0.300 3.700 10 O -0.415 6.415 11 N -0.374 5.374 12 C 0.047 3.953 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.038 0.962 45 H 0.109 0.891 46 H 0.072 0.928 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.798 -16.581 0.273 20.947 hybrid contribution 1.230 -0.197 -0.359 1.296 sum -11.568 -16.778 -0.086 20.380 Atomic orbital electron populations 1.21806 0.95892 1.01235 1.02094 1.21675 0.96004 0.96416 1.01893 1.20930 0.92374 0.95734 0.99810 0.90621 1.22111 1.00883 1.03078 0.95669 1.21396 0.97651 0.93779 1.00192 0.88934 1.21836 1.01588 1.00797 0.96103 1.20578 0.82467 0.91115 0.75866 1.90625 1.55017 1.46563 1.49319 1.46386 1.07187 1.09644 1.74201 1.21019 0.95700 0.80899 0.97669 1.22356 0.99950 0.99570 0.95923 1.20872 0.87656 0.92092 0.97328 1.44099 1.04423 1.65329 1.17723 1.19234 0.98319 1.29906 0.90599 0.91617 1.25060 1.00069 0.98303 0.96309 1.70038 1.31479 1.45320 1.07943 0.86228 0.83999 0.77602 0.78970 1.20269 1.21721 1.21576 1.20730 1.01614 0.86339 0.86509 1.22528 0.93974 1.02658 0.99462 0.92778 0.93056 0.92425 0.91728 0.92132 0.89702 0.92991 0.93728 0.91327 0.92055 0.92162 0.77244 0.90136 0.92437 0.92809 0.96238 0.92617 0.93660 0.96169 0.89077 0.92825 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.15 0.36 -0.80 16 2 C -0.12 -0.97 5.19 -26.73 -0.14 -1.11 16 3 C -0.07 -0.71 1.62 -90.62 -0.15 -0.86 16 4 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 5 C -0.16 -1.81 8.63 37.16 0.32 -1.49 16 6 C -0.11 -1.11 2.32 -91.77 -0.21 -1.32 16 7 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 8 C -0.15 -1.23 8.75 37.16 0.32 -0.90 16 9 C 0.51 7.25 6.83 -10.98 -0.07 7.17 16 10 O -0.54 -9.56 13.32 5.56 0.07 -9.49 16 11 N -0.72 -10.06 4.97 -53.76 -0.27 -10.33 16 12 C 0.15 2.63 2.42 -67.89 -0.16 2.46 16 13 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 14 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 15 N -0.59 -14.90 2.99 -172.32 -0.52 -15.41 16 16 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 19 N -0.90 -26.14 11.19 55.49 0.62 -25.52 16 20 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 25 C -0.15 -2.69 5.55 -26.61 -0.15 -2.83 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 29 H 0.06 0.46 6.17 -51.93 -0.32 0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.08 1.22 5.51 -51.93 -0.29 0.93 16 32 H 0.05 0.53 6.57 -51.92 -0.34 0.19 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.46 6.32 -51.93 -0.33 0.14 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.47 7.56 -51.93 -0.39 0.08 16 37 H 0.39 4.45 8.02 -40.82 -0.33 4.12 16 38 H 0.08 1.59 7.57 -51.93 -0.39 1.20 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 356.59 15.07 5.37 5.37 Total: -1.00 -30.44 356.59 -8.55 -38.99 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.50 Total: 2.02 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.30 Total: -2.19 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.16 Total: -51.25 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.07 Total: -9.49 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.44 -8.55 -38.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611539675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.418 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds