Wall clock time and date at job start Tue Mar 31 2020 05:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 6 6 C 1.34777 * 120.00429 * 275.00047 * 5 3 2 7 7 O 1.21592 * 119.99717 * 359.97438 * 6 5 3 8 8 N 1.34770 * 120.00511 * 180.02562 * 6 5 3 9 9 C 1.46505 * 120.00063 * 180.02562 * 8 6 5 10 10 C 1.53010 * 109.46963 * 179.97438 * 9 8 6 11 11 C 1.50694 * 109.46748 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00288 * 359.97438 * 11 10 9 13 13 C 1.37879 * 119.99815 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99741 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00079 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46702 * 89.99965 * 15 13 11 17 17 H 1.48495 * 109.47120 * 209.99895 * 15 13 11 18 18 H 1.48501 * 109.46931 * 330.00218 * 15 13 11 19 19 C 1.53005 * 109.46991 * 184.99870 * 3 2 1 20 20 C 1.53001 * 109.47098 * 299.99752 * 19 3 2 21 21 C 1.52992 * 109.46857 * 180.02562 * 20 19 3 22 22 C 1.53007 * 109.47490 * 60.00134 * 21 20 19 23 23 C 1.53002 * 109.46947 * 300.00198 * 22 21 20 24 24 C 1.52996 * 109.46840 * 179.97438 * 19 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.97001 * 120.00176 * 95.00254 * 5 3 2 31 31 H 0.97001 * 120.00095 * 359.97438 * 8 6 5 32 32 H 1.09001 * 109.47260 * 299.99576 * 9 8 6 33 33 H 1.09002 * 109.46888 * 60.00099 * 9 8 6 34 34 H 1.09001 * 109.46972 * 299.99981 * 10 9 8 35 35 H 1.08997 * 109.46611 * 59.99877 * 10 9 8 36 36 H 0.97004 * 119.99534 * 179.97438 * 14 13 11 37 37 H 1.09006 * 109.47013 * 60.00029 * 19 3 2 38 38 H 1.09000 * 109.46998 * 300.00170 * 20 19 3 39 39 H 1.09002 * 109.47083 * 60.00155 * 20 19 3 40 40 H 1.08997 * 109.47659 * 300.00326 * 21 20 19 41 41 H 1.09007 * 109.47202 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47632 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47009 * 59.99482 * 22 21 20 44 44 H 1.09000 * 109.46682 * 299.99485 * 23 22 21 45 45 H 1.08992 * 109.47061 * 179.97438 * 23 22 21 46 46 H 1.08997 * 109.47293 * 300.00267 * 24 19 3 47 47 H 1.09000 * 109.47097 * 59.99927 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 7 1.6524 2.0975 1.2517 6 6 0.4351 2.6644 1.3669 7 8 -0.3413 2.6327 0.4316 8 7 0.0787 3.2675 2.5183 9 6 -1.2447 3.8832 2.6436 10 6 -1.3938 4.4922 4.0393 11 6 -2.7553 5.1250 4.1683 12 1 -3.4452 5.0961 3.3379 13 6 -3.1204 5.7409 5.3466 14 7 -2.2805 5.7757 6.3581 15 14 -4.8079 6.5260 5.5064 16 1 -5.7739 5.5224 6.0213 17 1 -4.7339 7.6709 6.4492 18 1 -5.2573 7.0085 4.1759 19 6 3.5649 1.4444 -0.1257 20 6 4.1749 0.6878 1.0560 21 6 5.6997 0.6901 0.9306 22 6 6.2093 2.1328 0.9309 23 6 5.5992 2.8895 -0.2507 24 6 4.0748 2.8868 -0.1263 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 2.2719 2.1232 1.9977 31 1 0.6982 3.2931 3.2643 32 1 -1.3544 4.6650 1.8920 33 1 -2.0137 3.1252 2.4943 34 1 -1.2843 3.7101 4.7906 35 1 -0.6248 5.2500 4.1889 36 1 -2.5372 6.2093 7.1870 37 1 3.8532 0.9570 -1.0571 38 1 3.8865 1.1751 1.9873 39 1 3.8115 -0.3399 1.0560 40 1 5.9885 0.2031 -0.0008 41 1 6.1344 0.1515 1.7727 42 1 7.2956 2.1346 0.8420 43 1 5.9205 2.6200 1.8623 44 1 5.8879 2.4023 -1.1821 45 1 5.9618 3.9173 -0.2503 46 1 3.6401 3.4255 -0.9683 47 1 3.7863 3.3746 0.8048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612119156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:30 Heat of formation + Delta-G solvation = -76.359962 kcal Electronic energy + Delta-G solvation = -22954.685083 eV Core-core repulsion = 19749.539752 eV Total energy + Delta-G solvation = -3205.145332 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.27901 -38.64506 -35.76529 -34.50968 -32.92731 -31.98256 -31.05365 -30.81751 -29.22715 -25.93348 -24.51422 -23.14868 -22.06342 -21.33819 -20.61830 -20.51830 -19.36305 -17.96905 -16.42569 -16.14623 -15.50816 -15.39314 -14.57620 -14.44256 -14.41105 -14.20379 -14.11361 -13.77536 -13.28483 -13.13901 -12.96691 -12.76467 -12.40919 -12.25864 -11.85508 -11.43918 -11.37663 -11.35346 -11.20000 -11.14917 -11.00904 -10.75944 -10.66406 -10.60128 -10.28745 -10.16790 -10.14375 -9.78854 -9.50363 -9.22424 -8.78822 -8.45267 -8.17699 -6.07150 -4.09525 3.16477 3.31086 3.37192 3.42059 3.69839 4.35813 4.41998 4.46347 4.49233 4.75385 4.88961 4.95660 5.02934 5.16167 5.23164 5.27022 5.29998 5.30200 5.36360 5.44889 5.50703 5.70905 5.76651 5.81011 5.88681 5.91832 5.93228 5.96677 6.05576 6.11343 6.16297 6.24662 6.30066 6.38233 6.44394 6.64319 6.79208 6.83968 7.08704 7.34061 7.61078 7.66742 7.92530 8.29538 8.53016 8.96018 9.11081 9.55096 11.04532 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023274 B = 0.003204 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.763951 B = 8736.417736 C = 9420.073772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.169 3.831 4 H 0.086 0.914 5 N -0.745 5.745 6 C 0.698 3.302 7 O -0.593 6.593 8 N -0.741 5.741 9 C 0.142 3.858 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.093 4.093 20 C -0.117 4.117 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.391 0.609 31 H 0.391 0.609 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.915 -10.944 -11.393 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C 0.063 3.937 4 H 0.104 0.896 5 N -0.402 5.402 6 C 0.398 3.602 7 O -0.472 6.472 8 N -0.395 5.395 9 C 0.019 3.981 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.112 4.112 20 C -0.155 4.155 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.152 4.152 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.225 0.775 31 H 0.224 0.776 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.171 -10.880 -12.081 23.647 hybrid contribution -0.297 0.476 0.983 1.132 sum 16.874 -10.404 -11.098 22.719 Atomic orbital electron populations 1.21783 0.94706 0.99944 1.03643 1.22005 0.97281 0.96384 1.01542 1.20821 0.92926 0.92795 0.87133 0.89574 1.45257 1.16188 1.61894 1.16902 1.16047 0.81933 0.78465 0.83749 1.90890 1.51927 1.65335 1.39072 1.45550 1.19647 1.60248 1.14054 1.21546 0.80231 0.95773 1.00562 1.19318 0.97750 0.95934 0.89441 1.21061 0.99755 1.35902 0.99135 0.92249 1.24997 0.97442 0.96120 0.95762 1.69962 1.35462 1.44179 1.03783 0.86518 0.84115 0.78910 0.78053 1.20577 1.21200 1.19712 1.21473 0.93660 0.96599 0.99445 1.21646 0.95122 1.00534 0.98165 1.21527 0.95687 0.96699 1.01675 1.21551 0.99648 0.95788 0.98858 1.21522 0.95622 1.00137 0.98359 1.21556 0.95051 0.95966 1.02606 0.94258 0.92326 0.91899 0.91973 0.91811 0.77482 0.77615 0.92909 0.92926 0.96052 0.96044 0.92900 0.90042 0.92004 0.91402 0.92108 0.92140 0.92333 0.91942 0.92195 0.92127 0.91888 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.51 37.16 0.32 -1.66 16 2 C -0.13 -1.43 5.11 -26.73 -0.14 -1.57 16 3 C 0.17 1.87 2.00 -67.93 -0.14 1.73 16 4 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 5 N -0.75 -9.28 4.26 -58.68 -0.25 -9.53 16 6 C 0.70 11.94 7.13 -86.92 -0.62 11.32 16 7 O -0.59 -12.21 13.48 5.28 0.07 -12.13 16 8 N -0.74 -13.16 5.56 -65.22 -0.36 -13.52 16 9 C 0.14 3.08 5.61 -4.03 -0.02 3.05 16 10 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 11 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 12 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 C -0.09 -0.77 2.04 -90.62 -0.18 -0.96 16 20 C -0.12 -0.87 4.68 -26.73 -0.13 -1.00 16 21 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 22 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 23 C -0.12 -0.89 5.92 -26.76 -0.16 -1.05 16 24 C -0.11 -1.00 5.04 -26.76 -0.13 -1.14 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 27 H 0.06 1.04 5.65 -51.93 -0.29 0.75 16 28 H 0.06 0.63 6.71 -51.93 -0.35 0.28 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.39 4.06 6.67 -40.82 -0.27 3.79 16 31 H 0.39 6.05 8.49 -40.82 -0.35 5.71 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 39 H 0.07 0.50 6.54 -51.93 -0.34 0.16 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.64 7.45 -51.93 -0.39 0.25 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -30.95 358.46 -10.08 -41.03 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.59 Total: 4.16 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.07 Total: -6.37 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: 0.12 Total: -48.62 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.13 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.95 -10.08 -41.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612119156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.327 kcal (2) G-P(sol) polarization free energy of solvation -30.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds