Wall clock time and date at job start Tue Mar 31 2020 05:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47152 * 2 1 4 4 H 1.09008 * 109.47229 * 55.00128 * 3 2 1 5 5 N 1.46500 * 109.47098 * 295.00415 * 3 2 1 6 6 C 1.34773 * 120.00431 * 85.00044 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.53004 * 109.46928 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46843 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00351 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99771 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47191 * 0.02562 * 15 13 11 17 17 H 1.48508 * 109.47055 * 119.99859 * 15 13 11 18 18 H 1.48498 * 109.47283 * 239.99935 * 15 13 11 19 19 C 1.52998 * 109.47309 * 174.99986 * 3 2 1 20 20 C 1.52998 * 109.47164 * 300.00208 * 19 3 2 21 21 C 1.52998 * 109.47164 * 179.97438 * 20 19 3 22 22 C 1.53005 * 109.47340 * 59.99924 * 21 20 19 23 23 C 1.52998 * 109.46681 * 300.00106 * 22 21 20 24 24 C 1.52994 * 109.47372 * 60.00243 * 23 22 21 25 25 H 1.08997 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46777 * 299.99691 * 1 2 3 27 27 H 1.08991 * 109.47261 * 59.99576 * 1 2 3 28 28 H 1.09000 * 109.47154 * 239.99920 * 2 1 3 29 29 H 1.09004 * 109.47247 * 119.99804 * 2 1 3 30 30 H 0.97000 * 119.99456 * 264.99607 * 5 3 2 31 31 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 32 32 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 33 33 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 34 34 H 1.09007 * 109.46621 * 299.99773 * 10 9 8 35 35 H 1.08997 * 109.46991 * 59.99522 * 10 9 8 36 36 H 0.96996 * 120.00389 * 180.02562 * 14 13 11 37 37 H 1.08994 * 109.47018 * 59.99978 * 19 3 2 38 38 H 1.09008 * 109.46993 * 299.99625 * 20 19 3 39 39 H 1.08997 * 109.47562 * 59.99525 * 20 19 3 40 40 H 1.08994 * 109.47018 * 299.99769 * 21 20 19 41 41 H 1.09003 * 109.47086 * 179.97438 * 21 20 19 42 42 H 1.08998 * 109.47131 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.46899 * 59.99933 * 22 21 20 44 44 H 1.09002 * 109.47313 * 299.99574 * 23 22 21 45 45 H 1.09004 * 109.46776 * 179.97438 * 23 22 21 46 46 H 1.08998 * 109.47549 * 179.97438 * 24 23 22 47 47 H 1.09002 * 109.47448 * 59.99414 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2518 6 6 0.4351 2.6644 -1.3669 7 8 -0.3416 2.6318 -0.4319 8 7 0.0806 3.2718 -2.5166 9 6 -1.2403 3.8933 -2.6397 10 6 -1.3871 4.5075 -4.0333 11 6 -2.7457 5.1474 -4.1596 12 1 -3.4355 5.1185 -3.3291 13 6 -3.1078 5.7698 -5.3354 14 7 -2.2676 5.8054 -6.3465 15 14 -4.7921 6.5623 -5.4923 16 1 -5.5423 6.3861 -4.2229 17 1 -4.6328 8.0114 -5.7754 18 1 -5.5399 5.9202 -6.6030 19 6 3.5648 1.4443 0.1257 20 6 3.9696 0.7603 1.4330 21 6 5.4944 0.7616 1.5584 22 6 6.0050 2.2039 1.5582 23 6 5.6002 2.8879 0.2509 24 6 4.0754 2.8867 0.1255 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.2719 2.1231 -1.9977 31 1 0.7001 3.2975 -3.2626 32 1 -2.0123 3.1382 -2.4919 33 1 -1.3463 4.6736 -1.8860 34 1 -0.6150 5.2628 -4.1806 35 1 -1.2809 3.7275 -4.7871 36 1 -2.5222 6.2436 -7.1735 37 1 3.9994 0.9053 -0.7160 38 1 3.5350 1.2994 2.2749 39 1 3.6063 -0.2674 1.4331 40 1 5.9287 0.2223 0.7167 41 1 5.7828 0.2746 2.4901 42 1 7.0914 2.2048 1.6471 43 1 5.5707 2.7432 2.4001 44 1 6.0345 2.3486 -0.5910 45 1 5.9635 3.9156 0.2509 46 1 3.7870 3.3744 -0.8057 47 1 3.6411 3.4259 0.9674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612119165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:33 Heat of formation + Delta-G solvation = -77.753564 kcal Electronic energy + Delta-G solvation = -22758.389381 eV Core-core repulsion = 19553.183618 eV Total energy + Delta-G solvation = -3205.205763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.17130 -38.69355 -35.81108 -34.51734 -32.95222 -32.13137 -30.99957 -30.79276 -29.25409 -25.87980 -24.48694 -23.06444 -22.03562 -21.19426 -20.59442 -20.42354 -19.88571 -17.85865 -16.44485 -16.16541 -15.59083 -15.39962 -14.57840 -14.46055 -14.36711 -14.26751 -14.10040 -13.72977 -13.46643 -12.97935 -12.88248 -12.55840 -12.35628 -12.26093 -12.21917 -11.48311 -11.40829 -11.32645 -11.15036 -11.06514 -11.03600 -10.71170 -10.63660 -10.59097 -10.29546 -10.27282 -10.18112 -9.79340 -9.50631 -9.21066 -8.79454 -8.45992 -8.18236 -6.07477 -4.09816 3.13461 3.29728 3.37376 3.43067 3.69128 4.33050 4.40867 4.49534 4.49689 4.76475 4.83505 4.99839 5.04607 5.15553 5.21014 5.27934 5.28911 5.29749 5.37715 5.42922 5.51633 5.65007 5.76142 5.79792 5.88502 5.91045 5.91934 5.96548 6.08310 6.11087 6.14648 6.24862 6.29461 6.38227 6.44095 6.63996 6.78266 6.83265 7.08275 7.33605 7.60959 7.66468 7.92333 8.29266 8.52604 8.96009 9.10365 9.54919 11.04277 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028740 B = 0.002953 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.012605 B = 9479.679286 C =10118.825505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.169 3.831 4 H 0.086 0.914 5 N -0.747 5.747 6 C 0.699 3.301 7 O -0.593 6.593 8 N -0.741 5.741 9 C 0.142 3.858 10 C 0.013 3.987 11 C -0.519 4.519 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.896 3.104 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.093 4.093 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.391 0.609 31 H 0.392 0.608 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.739 -10.967 13.270 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.063 3.937 4 H 0.104 0.896 5 N -0.403 5.403 6 C 0.399 3.601 7 O -0.472 6.472 8 N -0.395 5.395 9 C 0.019 3.981 10 C -0.025 4.025 11 C -0.558 4.558 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.112 4.112 20 C -0.151 4.151 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.224 0.776 31 H 0.224 0.776 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.982 -10.905 13.960 24.540 hybrid contribution -0.289 0.494 -1.022 1.171 sum 16.693 -10.411 12.939 23.547 Atomic orbital electron populations 1.21779 0.94697 0.99949 1.03634 1.22039 0.97317 0.96414 1.01600 1.20831 0.92971 0.92792 0.87066 0.89604 1.45196 1.16233 1.61992 1.16842 1.16032 0.81890 0.78467 0.83750 1.90891 1.51861 1.65376 1.39066 1.45553 1.19843 1.59896 1.14192 1.21545 0.80309 0.95680 1.00579 1.19325 0.97784 0.95905 0.89466 1.21100 0.99948 1.35447 0.99275 0.92191 1.24998 0.97444 0.96156 0.95752 1.69965 1.35480 1.44036 1.03917 0.86466 0.84004 0.78978 0.78177 1.19569 1.20960 1.20956 1.21423 0.94195 0.96842 0.98699 1.21611 0.95701 1.00759 0.97066 1.21523 0.95690 0.96745 1.01599 1.21550 1.00171 0.96042 0.98056 1.21537 0.96077 1.00424 0.97649 1.21564 0.95089 0.95972 1.02501 0.94242 0.92317 0.91929 0.92317 0.91373 0.77562 0.77573 0.92917 0.92914 0.96036 0.96040 0.92946 0.90861 0.91677 0.91370 0.92067 0.92110 0.92334 0.92033 0.92105 0.92107 0.91640 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.51 37.16 0.32 -1.66 16 2 C -0.14 -1.46 5.39 -26.73 -0.14 -1.61 16 3 C 0.17 1.88 1.84 -67.93 -0.12 1.75 16 4 H 0.09 1.16 7.58 -51.92 -0.39 0.77 16 5 N -0.75 -9.33 4.34 -58.68 -0.25 -9.59 16 6 C 0.70 11.97 7.13 -86.92 -0.62 11.35 16 7 O -0.59 -12.24 13.48 5.28 0.07 -12.17 16 8 N -0.74 -13.15 5.56 -65.22 -0.36 -13.51 16 9 C 0.14 3.08 5.61 -4.04 -0.02 3.05 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 15 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 C -0.09 -0.78 1.82 -90.62 -0.17 -0.94 16 20 C -0.11 -0.84 4.86 -26.73 -0.13 -0.97 16 21 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 22 C -0.12 -0.83 5.92 -26.73 -0.16 -0.99 16 23 C -0.12 -0.90 5.92 -26.74 -0.16 -1.06 16 24 C -0.11 -1.00 5.05 -26.73 -0.13 -1.14 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.88 7.84 -51.93 -0.41 0.48 16 27 H 0.06 1.04 5.64 -51.93 -0.29 0.75 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.62 6.17 -51.93 -0.32 0.30 16 30 H 0.39 3.97 8.40 -40.82 -0.34 3.62 16 31 H 0.39 6.04 8.49 -40.82 -0.35 5.69 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 39 H 0.07 0.48 6.32 -51.93 -0.33 0.15 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 361.24 15.07 5.44 5.44 Total: -1.00 -31.13 361.24 -10.14 -41.27 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.70 Total: 3.88 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.05 Total: -6.28 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.12 Total: -48.67 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.07 Total: -12.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.13 -10.14 -41.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612119165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.483 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds