Wall clock time and date at job start Tue Mar 31 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47153 * 2 1 4 4 H 1.09002 * 109.46843 * 306.31728 * 3 2 1 5 5 C 1.52997 * 109.47167 * 66.31550 * 3 2 1 6 6 C 1.53000 * 109.46905 * 186.32228 * 3 2 1 7 7 H 1.09002 * 109.69866 * 186.27285 * 6 3 2 8 8 C 1.53630 * 109.66271 * 306.85953 * 6 3 2 9 9 C 1.53042 * 109.23850 * 174.55553 * 8 6 3 10 10 C 1.53043 * 109.53656 * 298.50748 * 9 8 6 11 11 C 1.53196 * 109.31097 * 61.37147 * 10 9 8 12 12 N 1.46919 * 109.58830 * 65.91307 * 6 3 2 13 13 C 1.34779 * 120.63348 * 6.63003 * 12 6 3 14 14 O 1.21580 * 119.99802 * 5.74549 * 13 12 6 15 15 N 1.34778 * 119.99851 * 185.75138 * 13 12 6 16 16 C 1.46500 * 119.99452 * 175.25787 * 15 13 12 17 17 C 1.53004 * 109.46767 * 179.97438 * 16 15 13 18 18 C 1.50699 * 109.47188 * 179.97438 * 17 16 15 19 19 H 1.08008 * 119.99816 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00424 * 179.72037 * 18 17 16 21 21 N 1.31513 * 119.99500 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00229 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47382 * 60.00221 * 22 20 18 24 24 H 1.48509 * 109.47065 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46925 * 300.00005 * 22 20 18 26 26 H 1.09006 * 109.46868 * 60.00309 * 1 2 3 27 27 H 1.08997 * 109.46774 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47332 * 300.00627 * 1 2 3 29 29 H 1.08994 * 109.47332 * 239.99373 * 2 1 3 30 30 H 1.09006 * 109.46868 * 119.99691 * 2 1 3 31 31 H 1.09002 * 109.46775 * 54.06353 * 5 3 2 32 32 H 1.08998 * 109.46926 * 174.05940 * 5 3 2 33 33 H 1.08990 * 109.47435 * 294.06103 * 5 3 2 34 34 H 1.08996 * 109.63092 * 54.56252 * 8 6 3 35 35 H 1.08997 * 109.45904 * 294.43658 * 8 6 3 36 36 H 1.08999 * 109.45694 * 178.49137 * 9 8 6 37 37 H 1.08990 * 109.45209 * 58.52325 * 9 8 6 38 38 H 1.08996 * 109.49962 * 301.42085 * 10 9 8 39 39 H 1.09003 * 109.52441 * 181.33613 * 10 9 8 40 40 H 1.08998 * 109.58616 * 185.57873 * 11 10 9 41 41 H 1.08996 * 109.70676 * 65.21954 * 11 10 9 42 42 H 0.96994 * 120.00162 * 355.24895 * 15 13 12 43 43 H 1.08994 * 109.47479 * 59.99491 * 16 15 13 44 44 H 1.09002 * 109.46918 * 299.98901 * 16 15 13 45 45 H 1.08994 * 109.47349 * 59.99641 * 17 16 15 46 46 H 1.09002 * 109.46692 * 299.99269 * 17 16 15 47 47 H 0.97003 * 119.99669 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5873 1.9879 -0.8281 5 6 1.6637 2.1165 1.3210 6 6 3.5618 1.4454 -0.1589 7 1 3.9408 2.4614 -0.0481 8 6 4.1944 0.5366 0.9061 9 6 5.7009 0.4386 0.6550 10 6 5.9511 -0.1850 -0.7200 11 6 5.3380 0.7103 -1.8014 12 7 3.9194 0.9282 -1.4867 13 6 2.9648 0.6640 -2.4007 14 8 1.8060 0.9505 -2.1697 15 7 3.2947 0.0821 -3.5708 16 6 2.2464 -0.2997 -4.5202 17 6 2.8852 -0.9342 -5.7573 18 6 1.8068 -1.3276 -6.7337 19 1 0.7694 -1.1438 -6.4955 20 6 2.1446 -1.9172 -7.9333 21 7 3.4080 -2.1368 -8.2253 22 14 0.8079 -2.4041 -9.1439 23 1 0.0369 -1.1988 -9.5413 24 1 1.4283 -3.0144 -10.3473 25 1 -0.1041 -3.3869 -8.5053 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0271 1.5133 2.1530 32 1 2.1165 3.1070 1.3653 33 1 0.5797 2.2093 1.3857 34 1 3.7507 -0.4573 0.8498 35 1 4.0172 0.9587 1.8953 36 1 6.1575 -0.1838 1.4245 37 1 6.1398 1.4358 0.6868 38 1 5.4908 -1.1721 -0.7610 39 1 7.0241 -0.2765 -0.8888 40 1 5.4261 0.2231 -2.7724 41 1 5.8584 1.6678 -1.8245 42 1 4.2262 -0.0838 -3.7843 43 1 1.6838 0.5857 -4.8158 44 1 1.5740 -1.0172 -4.0497 45 1 3.4480 -1.8196 -5.4620 46 1 3.5573 -0.2164 -6.2276 47 1 3.6456 -2.5520 -9.0691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380187.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:21 Heat of formation + Delta-G solvation = -27.590321 kcal Electronic energy + Delta-G solvation = -23840.452870 eV Core-core repulsion = 20637.422349 eV Total energy + Delta-G solvation = -3203.030521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.81527 -37.57968 -36.16241 -34.46734 -32.95733 -32.46143 -30.98477 -29.35441 -28.80715 -25.55716 -24.38320 -24.27669 -22.89996 -21.13765 -21.04768 -19.76225 -19.09344 -17.32862 -16.37495 -15.80457 -15.63279 -14.93338 -14.74814 -14.55861 -14.35092 -14.19836 -13.97805 -13.67876 -13.23110 -12.97466 -12.76330 -12.47782 -12.25274 -12.14131 -11.95042 -11.58558 -11.46919 -11.24637 -11.14347 -11.02107 -10.92521 -10.75539 -10.62489 -10.44224 -10.30872 -10.14865 -9.95639 -9.58960 -9.31189 -8.65967 -8.47555 -8.38934 -8.09395 -6.07447 -4.09954 2.97859 3.32508 3.36188 3.39827 3.61423 4.24442 4.45065 4.69058 4.73656 4.75215 4.95685 5.12604 5.17904 5.25946 5.29676 5.33039 5.44224 5.54585 5.64339 5.71455 5.76849 5.78457 5.79796 5.85658 5.90046 5.96142 6.00999 6.10942 6.19920 6.31189 6.36327 6.43454 6.45982 6.58493 6.64822 6.72542 6.82118 6.96749 7.21335 7.28142 7.58683 7.65790 7.91840 8.28553 8.45179 8.95156 9.09910 9.54676 11.04231 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021771 B = 0.004048 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.824020 B = 6915.105913 C = 7858.880209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.101 4.101 4 H 0.125 0.875 5 C -0.151 4.151 6 C 0.172 3.828 7 H 0.063 0.937 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.135 4.135 11 C 0.112 3.888 12 N -0.631 5.631 13 C 0.700 3.300 14 O -0.577 6.577 15 N -0.742 5.742 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.061 0.939 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.390 0.610 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 6.313 19.178 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.119 4.119 4 H 0.143 0.857 5 C -0.209 4.209 6 C 0.068 3.932 7 H 0.081 0.919 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.173 4.173 11 C -0.012 4.012 12 N -0.370 5.370 13 C 0.403 3.597 14 O -0.457 6.457 15 N -0.398 5.398 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.225 0.775 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.253 6.419 19.167 20.656 hybrid contribution 0.026 -0.475 -0.815 0.944 sum 4.279 5.944 18.352 19.759 Atomic orbital electron populations 1.21674 0.96464 1.00423 1.01295 1.21606 0.95770 0.95871 1.00274 1.21949 0.92812 0.98571 0.98547 0.85739 1.22008 1.01347 0.99765 0.97763 1.21180 0.96005 0.95568 0.80420 0.91894 1.22183 0.95277 1.01281 0.98641 1.21505 0.96406 1.00849 0.96818 1.21915 1.00759 0.99627 0.95043 1.21588 0.81668 0.99439 0.98525 1.47294 1.05321 1.70276 1.14091 1.15988 0.84574 0.78800 0.80357 1.90824 1.18281 1.58631 1.77951 1.45860 1.11172 1.64455 1.18294 1.21541 0.88941 0.98582 0.89109 1.19308 0.96736 0.95810 0.90553 1.21014 0.93120 1.40015 1.01731 0.92314 1.24985 0.95498 0.95646 0.98107 1.69948 1.16198 1.43337 1.23917 0.86583 0.81793 0.78904 0.80314 1.20112 1.21270 1.20120 0.92010 0.94064 0.93922 0.91198 0.94535 0.93478 0.93432 0.92595 0.90942 0.91124 0.92005 0.92057 0.91357 0.90932 0.90179 0.91684 0.77477 0.92815 0.92982 0.96141 0.96091 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.60 37.16 0.36 -1.63 16 2 C -0.10 -1.39 3.62 -26.73 -0.10 -1.49 16 3 C -0.10 -1.32 1.62 -90.62 -0.15 -1.47 16 4 H 0.13 2.04 5.58 -53.73 -0.30 1.74 16 5 C -0.15 -1.61 8.49 37.16 0.32 -1.29 16 6 C 0.17 2.05 2.66 -67.38 -0.18 1.87 16 7 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 8 C -0.14 -1.34 4.68 -26.38 -0.12 -1.46 16 9 C -0.12 -1.01 5.88 -26.69 -0.16 -1.16 16 10 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 11 C 0.11 1.20 6.43 -3.70 -0.02 1.17 16 12 N -0.63 -8.46 2.92 -170.65 -0.50 -8.96 16 13 C 0.70 11.95 6.78 -86.91 -0.59 11.36 16 14 O -0.58 -11.04 9.81 5.30 0.05 -10.99 16 15 N -0.74 -13.23 5.47 -65.23 -0.36 -13.59 16 16 C 0.14 3.02 5.62 -4.04 -0.02 3.00 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 19 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 22 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.52 6.74 -51.93 -0.35 0.17 16 29 H 0.07 1.20 5.28 -51.93 -0.27 0.93 16 30 H 0.04 0.47 6.61 -51.93 -0.34 0.13 16 31 H 0.05 0.45 7.06 -51.93 -0.37 0.09 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.60 6.90 -51.93 -0.36 0.24 16 34 H 0.07 0.82 6.20 -51.93 -0.32 0.49 16 35 H 0.07 0.62 7.07 -51.93 -0.37 0.25 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.87 5.56 -51.93 -0.29 0.59 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.39 6.23 5.93 -40.82 -0.24 5.99 16 43 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -29.73 347.82 -9.45 -39.19 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.23 Total: 3.68 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -1.38 Total: -5.53 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.12 Total: -48.01 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.05 Total: -10.99 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.73 -9.45 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380187.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.595 kcal (2) G-P(sol) polarization free energy of solvation -29.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds