Wall clock time and date at job start Tue Mar 31 2020 05:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53009 * 109.46952 * 2 1 4 4 H 1.08990 * 109.47087 * 305.16931 * 3 2 1 5 5 C 1.52999 * 109.46482 * 65.16658 * 3 2 1 6 6 C 1.52993 * 109.47263 * 185.16319 * 3 2 1 7 7 H 1.09009 * 109.70206 * 52.19123 * 6 3 2 8 8 C 1.53196 * 109.59189 * 291.83507 * 6 3 2 9 9 C 1.53032 * 109.31468 * 185.57467 * 8 6 3 10 10 C 1.53043 * 109.53936 * 61.36280 * 9 8 6 11 11 C 1.53628 * 109.24240 * 298.51459 * 10 9 8 12 12 N 1.46920 * 109.58963 * 172.53976 * 6 3 2 13 13 C 1.34786 * 120.62810 * 353.37935 * 12 6 3 14 14 O 1.21584 * 119.99930 * 3.67412 * 13 12 6 15 15 N 1.34769 * 119.99831 * 183.39943 * 13 12 6 16 16 C 1.46504 * 120.00116 * 175.43945 * 15 13 12 17 17 C 1.52995 * 109.47203 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.46816 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00366 * 359.97438 * 18 17 16 20 20 C 1.37886 * 119.99832 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99838 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47148 * 89.99672 * 22 20 18 24 24 H 1.48505 * 109.47242 * 209.99715 * 22 20 18 25 25 H 1.48497 * 109.47287 * 329.99800 * 22 20 18 26 26 H 1.09004 * 109.46906 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46992 * 299.99320 * 1 2 3 28 28 H 1.08999 * 109.47879 * 59.99481 * 1 2 3 29 29 H 1.09003 * 109.46992 * 240.00680 * 2 1 3 30 30 H 1.08999 * 109.47879 * 120.00519 * 2 1 3 31 31 H 1.09003 * 109.46582 * 168.98056 * 5 3 2 32 32 H 1.09000 * 109.47396 * 288.97736 * 5 3 2 33 33 H 1.09001 * 109.47362 * 48.98373 * 5 3 2 34 34 H 1.08998 * 109.49570 * 305.52918 * 8 6 3 35 35 H 1.09004 * 109.49532 * 65.62134 * 8 6 3 36 36 H 1.09005 * 109.46213 * 181.38244 * 9 8 6 37 37 H 1.08996 * 109.46674 * 301.35697 * 9 8 6 38 38 H 1.09009 * 109.49582 * 58.58323 * 10 9 8 39 39 H 1.09001 * 109.49975 * 178.67684 * 10 9 8 40 40 H 1.08998 * 109.73364 * 295.11603 * 11 10 9 41 41 H 1.09000 * 109.66110 * 174.54480 * 11 10 9 42 42 H 0.97008 * 120.00654 * 355.44074 * 15 13 12 43 43 H 1.08999 * 109.46852 * 299.99893 * 16 15 13 44 44 H 1.08993 * 109.46820 * 59.99638 * 16 15 13 45 45 H 1.08999 * 109.46903 * 299.99585 * 17 16 15 46 46 H 1.08993 * 109.47754 * 59.99934 * 17 16 15 47 47 H 0.96993 * 120.00058 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6030 1.9824 -0.8400 5 6 1.6387 2.1252 1.3092 6 6 3.5644 1.4446 -0.1298 7 1 3.8610 0.8406 -0.9874 8 6 4.1892 0.8686 1.1448 9 6 5.7118 1.0012 1.0667 10 6 6.0923 2.4803 0.9681 11 6 5.4891 3.0739 -0.3141 12 7 4.0416 2.8225 -0.3094 13 6 3.1681 3.8360 -0.4723 14 8 1.9726 3.6250 -0.4049 15 7 3.6200 5.0843 -0.7044 16 6 2.6724 6.1669 -0.9806 17 6 3.4398 7.4709 -1.2073 18 6 2.4649 8.5846 -1.4907 19 1 1.4041 8.3824 -1.5080 20 6 2.9273 9.8616 -1.7291 21 7 4.2190 10.1077 -1.7087 22 14 1.7189 11.2418 -2.0812 23 1 1.3230 11.8906 -0.8054 24 1 2.3588 12.2455 -2.9692 25 1 0.5142 10.6868 -2.7489 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3635 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.1616 3.0775 1.3974 32 1 0.5627 2.2998 1.3130 33 1 1.9059 1.4847 2.1497 34 1 3.8201 1.4175 2.0111 35 1 3.9200 -0.1835 1.2385 36 1 6.1603 0.5698 1.9616 37 1 6.0777 0.4729 0.1864 38 1 5.7052 3.0142 1.8361 39 1 7.1777 2.5754 0.9362 40 1 5.9394 2.6000 -1.1863 41 1 5.6735 4.1478 -0.3431 42 1 4.5728 5.2660 -0.6887 43 1 2.0952 5.9256 -1.8732 44 1 1.9979 6.2844 -0.1326 45 1 4.0172 7.7124 -0.3149 46 1 4.1140 7.3531 -2.0555 47 1 4.5442 11.0060 -1.8760 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380188.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:24 Heat of formation + Delta-G solvation = -27.038114 kcal Electronic energy + Delta-G solvation = -23632.486928 eV Core-core repulsion = 20429.480352 eV Total energy + Delta-G solvation = -3203.006576 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80575 -37.61976 -36.17805 -34.58769 -33.02276 -32.48041 -31.09241 -29.34662 -28.39754 -25.83982 -24.65707 -24.21670 -22.79216 -21.20973 -20.96357 -19.74298 -19.12078 -17.33352 -16.39233 -15.78477 -15.60556 -15.08801 -14.80063 -14.55383 -14.40755 -14.21572 -13.93964 -13.75259 -13.45966 -13.00510 -12.86754 -12.56849 -12.25752 -11.96026 -11.85020 -11.68996 -11.42873 -11.18376 -11.07358 -11.04097 -10.89597 -10.72982 -10.62377 -10.56930 -10.36691 -10.24694 -10.07732 -9.59267 -9.30440 -8.72816 -8.45719 -8.35067 -8.09935 -6.07785 -4.10205 2.97302 3.30608 3.36713 3.41244 3.60426 4.24638 4.44923 4.68647 4.71986 4.74429 4.96061 5.03572 5.15861 5.18361 5.22796 5.29399 5.41873 5.47158 5.58694 5.65893 5.73633 5.77560 5.80546 5.86368 5.91685 5.94699 5.98700 6.09792 6.20032 6.24725 6.27995 6.34328 6.43059 6.44688 6.60973 6.79348 6.82381 6.96343 7.17134 7.27714 7.58616 7.65619 7.91678 8.28310 8.44840 8.95142 9.08421 9.54464 11.03943 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021673 B = 0.003835 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.612252 B = 7298.856895 C = 8351.309800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.092 4.092 4 H 0.116 0.884 5 C -0.116 4.116 6 C 0.171 3.829 7 H 0.063 0.937 8 C -0.135 4.135 9 C -0.118 4.118 10 C -0.135 4.135 11 C 0.111 3.889 12 N -0.630 5.630 13 C 0.697 3.303 14 O -0.577 6.577 15 N -0.742 5.742 16 C 0.141 3.859 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.390 0.610 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.223 -20.599 4.994 21.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.110 4.110 4 H 0.134 0.866 5 C -0.173 4.173 6 C 0.067 3.933 7 H 0.081 0.919 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.173 4.173 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.399 3.601 14 O -0.457 6.457 15 N -0.398 5.398 16 C 0.018 3.982 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.225 0.775 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.453 -20.563 4.988 21.301 hybrid contribution 0.109 0.931 -0.158 0.950 sum 2.562 -19.632 4.830 20.379 Atomic orbital electron populations 1.21730 0.95945 1.00612 1.02205 1.21735 0.96158 0.97475 1.00880 1.21846 0.92462 0.94187 1.02487 0.86644 1.21877 1.01187 0.99846 0.94382 1.21099 0.95047 0.80782 0.96350 0.91925 1.22111 0.95118 1.01101 0.99051 1.21508 0.96159 0.96191 1.01741 1.21991 1.00504 0.96477 0.98335 1.21683 0.80797 1.00987 0.97772 1.47282 1.05232 1.06735 1.77612 1.15996 0.85091 0.80636 0.78348 1.90894 1.14337 1.82052 1.58393 1.45851 1.10864 1.07629 1.75420 1.21545 0.91389 0.85756 0.99516 1.19312 0.96006 0.89701 0.97425 1.21056 0.93267 0.93012 1.48498 0.92249 1.24993 0.95225 0.98843 0.95225 1.69954 1.12586 1.21228 1.49623 0.86520 0.81164 0.81659 0.78262 1.20574 1.21197 1.19717 0.93555 0.92590 0.92745 0.92770 0.92722 0.91734 0.93493 0.95623 0.90906 0.91124 0.92002 0.92040 0.91399 0.90940 0.91609 0.90140 0.77475 0.92967 0.92824 0.96102 0.96089 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.68 37.16 0.36 -1.22 16 2 C -0.12 -1.33 5.09 -26.73 -0.14 -1.47 16 3 C -0.09 -1.21 1.63 -90.62 -0.15 -1.36 16 4 H 0.12 1.92 5.76 -52.97 -0.31 1.61 16 5 C -0.12 -1.67 6.32 37.16 0.23 -1.44 16 6 C 0.17 2.04 2.64 -67.60 -0.18 1.86 16 7 H 0.06 0.71 8.13 -51.92 -0.42 0.29 16 8 C -0.14 -1.34 4.68 -26.61 -0.12 -1.46 16 9 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 10 C -0.13 -1.23 6.10 -26.38 -0.16 -1.39 16 11 C 0.11 1.20 6.43 -3.49 -0.02 1.17 16 12 N -0.63 -8.50 2.89 -170.65 -0.49 -8.99 16 13 C 0.70 12.02 7.16 -86.92 -0.62 11.40 16 14 O -0.58 -11.24 9.87 5.29 0.05 -11.18 16 15 N -0.74 -13.32 5.47 -65.23 -0.36 -13.67 16 16 C 0.14 3.03 5.62 -4.04 -0.02 3.01 16 17 C 0.01 0.33 5.09 -27.89 -0.14 0.18 16 18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.21 13.29 55.43 0.74 -25.48 16 22 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.62 6.83 -51.93 -0.35 0.27 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.54 7.02 -51.93 -0.36 0.17 16 31 H 0.06 1.10 5.43 -51.93 -0.28 0.82 16 32 H 0.05 0.71 7.14 -51.93 -0.37 0.34 16 33 H 0.02 0.32 6.84 -51.93 -0.36 -0.03 16 34 H 0.07 0.82 6.26 -51.93 -0.32 0.49 16 35 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.88 5.61 -51.93 -0.29 0.59 16 42 H 0.39 6.25 5.94 -40.82 -0.24 6.01 16 43 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 349.03 15.07 5.26 5.26 Total: -1.00 -29.99 349.03 -9.65 -39.64 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.30 Total: 3.10 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.53 Total: -5.11 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.11 Total: -48.15 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.05 Total: -11.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.99 -9.65 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380188.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.601 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds