Wall clock time and date at job start Tue Mar 31 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47582 * 2 1 4 4 H 1.09000 * 109.47513 * 54.03786 * 3 2 1 5 5 C 1.53002 * 109.46984 * 294.04130 * 3 2 1 6 6 C 1.52998 * 109.47782 * 174.04246 * 3 2 1 7 7 H 1.09004 * 109.69866 * 306.23704 * 6 3 2 8 8 C 1.53623 * 109.66694 * 66.82272 * 6 3 2 9 9 C 1.53041 * 109.24363 * 174.55426 * 8 6 3 10 10 C 1.53042 * 109.53612 * 298.51528 * 9 8 6 11 11 C 1.53188 * 109.31504 * 61.36395 * 10 9 8 12 12 N 1.46922 * 109.59151 * 185.88468 * 6 3 2 13 13 C 1.34779 * 120.62838 * 6.61776 * 12 6 3 14 14 O 1.21578 * 119.99927 * 5.65003 * 13 12 6 15 15 N 1.34777 * 119.99759 * 185.64942 * 13 12 6 16 16 C 1.46500 * 119.99857 * 175.22607 * 15 13 12 17 17 C 1.53002 * 109.47040 * 180.02562 * 16 15 13 18 18 C 1.50699 * 109.47053 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99996 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00197 * 179.72505 * 18 17 16 21 21 N 1.31514 * 120.00427 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99764 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46850 * 90.00077 * 22 20 18 24 24 H 1.48499 * 109.46962 * 209.99862 * 22 20 18 25 25 H 1.48497 * 109.47250 * 330.00309 * 22 20 18 26 26 H 1.09003 * 109.46883 * 60.00243 * 1 2 3 27 27 H 1.08996 * 109.47183 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47084 * 300.00298 * 1 2 3 29 29 H 1.09002 * 109.47084 * 239.99702 * 2 1 3 30 30 H 1.09003 * 109.46883 * 119.99757 * 2 1 3 31 31 H 1.09005 * 109.47049 * 309.49299 * 5 3 2 32 32 H 1.08997 * 109.47639 * 69.49486 * 5 3 2 33 33 H 1.08999 * 109.47290 * 189.49514 * 5 3 2 34 34 H 1.09004 * 109.63037 * 54.56424 * 8 6 3 35 35 H 1.09003 * 109.45890 * 294.44013 * 8 6 3 36 36 H 1.09000 * 109.45911 * 178.49324 * 9 8 6 37 37 H 1.09001 * 109.45882 * 58.53598 * 9 8 6 38 38 H 1.09004 * 109.49479 * 301.41173 * 10 9 8 39 39 H 1.08997 * 109.51978 * 181.33234 * 10 9 8 40 40 H 1.08996 * 109.59039 * 185.57574 * 11 10 9 41 41 H 1.08999 * 109.70477 * 65.21894 * 11 10 9 42 42 H 0.96998 * 120.00140 * 355.23130 * 15 13 12 43 43 H 1.08999 * 109.47163 * 60.00517 * 16 15 13 44 44 H 1.08998 * 109.47496 * 300.00205 * 16 15 13 45 45 H 1.08996 * 109.47050 * 60.00638 * 17 16 15 46 46 H 1.08998 * 109.47133 * 300.00414 * 17 16 15 47 47 H 0.97002 * 120.00403 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5923 1.9862 0.8318 5 6 1.6560 2.1191 -1.3174 6 6 3.5627 1.4450 0.1497 7 1 3.8464 0.8680 1.0299 8 6 4.2064 0.8309 -1.1027 9 6 5.7280 0.9615 -1.0034 10 6 6.1116 2.4418 -0.9415 11 6 5.4895 3.0748 0.3070 12 7 4.0414 2.8268 0.2914 13 6 3.1687 3.8471 0.4102 14 8 1.9779 3.6206 0.5042 15 7 3.6162 5.1183 0.4250 16 6 2.6626 6.2302 0.4486 17 6 3.4258 7.5563 0.4609 18 6 2.4449 8.7001 0.4859 19 1 1.3833 8.5011 0.4927 20 6 2.9026 10.0005 0.5062 21 7 2.0466 10.9987 0.5285 22 14 4.7387 10.3445 0.5022 23 1 5.2175 10.4603 -0.8988 24 1 5.0058 11.6150 1.2232 25 1 5.4523 9.2318 1.1787 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9586 1.4870 -2.1523 32 1 0.5769 2.2693 -1.3478 33 1 2.1592 3.0833 -1.3908 34 1 3.8534 1.3555 -1.9906 35 1 3.9354 -0.2227 -1.1707 36 1 6.1897 0.5029 -1.8778 37 1 6.0777 0.4578 -0.1022 38 1 5.7407 2.9512 -1.8310 39 1 7.1966 2.5352 -0.8947 40 1 5.6764 4.1486 0.3042 41 1 5.9266 2.6302 1.2011 42 1 4.5695 5.2970 0.4198 43 1 2.0433 6.1588 1.3427 44 1 2.0289 6.1844 -0.4370 45 1 4.0448 7.6276 -0.4334 46 1 4.0598 7.6024 1.3463 47 1 2.3687 11.9136 0.5425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380189.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:27 Heat of formation + Delta-G solvation = -25.151255 kcal Electronic energy + Delta-G solvation = -23721.942779 eV Core-core repulsion = 20519.018024 eV Total energy + Delta-G solvation = -3202.924755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.87300 -37.69878 -36.23255 -34.70847 -33.03734 -32.50277 -31.17226 -29.82192 -28.48251 -25.98634 -24.72983 -24.24315 -22.79071 -21.19050 -20.89272 -19.78394 -19.18860 -17.40004 -16.86620 -15.89335 -15.65318 -15.13919 -14.84555 -14.56947 -14.38812 -14.19883 -13.96560 -13.82604 -13.55607 -13.08957 -13.04374 -12.63802 -12.54625 -11.99959 -11.90010 -11.73506 -11.51258 -11.43423 -11.24228 -11.09999 -10.98389 -10.84038 -10.64484 -10.41884 -10.34303 -10.16331 -10.08553 -9.93040 -9.33397 -8.74680 -8.61600 -8.51280 -8.21650 -6.09791 -4.09578 2.88428 3.25550 3.33170 3.34477 3.52288 4.14996 4.38618 4.61310 4.65521 4.68827 4.89763 4.99436 5.12247 5.12605 5.17588 5.23204 5.35143 5.40631 5.53717 5.60399 5.68589 5.71325 5.75872 5.81902 5.86731 5.90449 5.93621 6.04185 6.10826 6.16146 6.23190 6.25148 6.27931 6.36462 6.55057 6.61283 6.69926 6.83088 7.03930 7.13246 7.26774 7.31195 7.69580 8.29868 8.47175 8.94518 8.99861 9.50532 11.03316 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.004156 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.014642 B = 6735.175464 C = 7784.465223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.100 4.100 4 H 0.125 0.875 5 C -0.121 4.121 6 C 0.172 3.828 7 H 0.064 0.936 8 C -0.135 4.135 9 C -0.118 4.118 10 C -0.135 4.135 11 C 0.112 3.888 12 N -0.631 5.631 13 C 0.702 3.298 14 O -0.576 6.576 15 N -0.745 5.745 16 C 0.149 3.851 17 C -0.021 4.021 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.388 0.612 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.020 0.980 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.200 -22.997 -2.398 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.118 4.118 4 H 0.142 0.858 5 C -0.178 4.178 6 C 0.068 3.932 7 H 0.082 0.918 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.404 3.596 14 O -0.455 6.455 15 N -0.402 5.402 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.559 4.559 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.224 0.776 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.034 0.966 46 H 0.039 0.961 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.283 -22.911 -2.333 24.153 hybrid contribution 1.585 0.464 -0.086 1.653 sum 8.868 -22.447 -2.419 24.256 Atomic orbital electron populations 1.21735 0.95897 1.00661 1.02249 1.21708 0.96181 0.97314 1.00877 1.21955 0.92645 0.94613 1.02599 0.85776 1.21865 1.01237 0.99922 0.94813 1.21185 0.95005 0.80444 0.96545 0.91838 1.22182 0.95030 1.01013 0.99156 1.21506 0.96181 0.96097 1.01805 1.21916 1.00405 0.96445 0.98593 1.21585 0.80832 1.00740 0.98054 1.47295 1.05137 1.06273 1.78233 1.15946 0.84978 0.80626 0.78001 1.90846 1.14669 1.82280 1.57750 1.45855 1.10506 1.04858 1.78935 1.21337 0.90926 0.83774 1.01366 1.19788 0.96946 0.92542 0.96651 1.20920 0.94469 0.89086 1.51453 0.90601 1.24995 0.97718 0.96133 0.94423 1.69904 1.34207 0.99095 1.50527 0.86759 0.86073 0.77837 0.78439 1.20258 1.21289 1.19125 0.92574 0.93520 0.92694 0.92760 0.92733 0.95146 0.93263 0.92221 0.90915 0.91054 0.91953 0.92024 0.91354 0.90943 0.90348 0.91614 0.77649 0.92138 0.92340 0.96608 0.96143 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.69 37.16 0.36 -1.20 16 2 C -0.12 -1.28 5.04 -26.74 -0.13 -1.41 16 3 C -0.10 -1.29 1.62 -90.62 -0.15 -1.43 16 4 H 0.12 2.01 5.59 -53.71 -0.30 1.71 16 5 C -0.12 -1.71 6.65 37.16 0.25 -1.47 16 6 C 0.17 1.97 2.66 -67.38 -0.18 1.79 16 7 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 8 C -0.14 -1.28 4.69 -26.39 -0.12 -1.40 16 9 C -0.12 -0.94 5.88 -26.69 -0.16 -1.10 16 10 C -0.14 -1.14 6.08 -26.61 -0.16 -1.30 16 11 C 0.11 1.11 6.43 -3.71 -0.02 1.09 16 12 N -0.63 -8.10 2.90 -170.66 -0.50 -8.60 16 13 C 0.70 11.63 6.76 -86.92 -0.59 11.04 16 14 O -0.58 -11.00 10.39 5.30 0.06 -10.95 16 15 N -0.75 -12.61 5.47 -65.23 -0.36 -12.96 16 16 C 0.15 3.07 5.62 -4.04 -0.02 3.04 16 17 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 18 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 19 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 22 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 26 H 0.06 0.62 6.82 -51.93 -0.35 0.26 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.52 7.03 -51.93 -0.36 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.37 6.77 -51.93 -0.35 0.02 16 32 H 0.05 0.73 7.08 -51.93 -0.37 0.36 16 33 H 0.06 0.99 5.36 -51.93 -0.28 0.71 16 34 H 0.07 0.78 6.27 -51.93 -0.33 0.46 16 35 H 0.07 0.59 7.07 -51.93 -0.37 0.22 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.77 5.56 -51.93 -0.29 0.48 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.39 5.67 5.93 -40.82 -0.24 5.43 16 43 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.35 7.58 -51.93 -0.39 -0.04 16 46 H 0.02 0.46 7.18 -51.93 -0.37 0.09 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -30.81 345.45 -9.21 -40.02 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.24 Total: 3.57 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.48 Total: -6.05 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.08 Total: -48.22 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.06 Total: -10.95 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.81 -9.21 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380189.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.871 kcal (2) G-P(sol) polarization free energy of solvation -30.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds