Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46890 * 2 1 4 4 H 1.08999 * 109.47210 * 53.63957 * 3 2 1 5 5 C 1.53000 * 109.47047 * 293.63712 * 3 2 1 6 6 C 1.53001 * 109.46765 * 173.64082 * 3 2 1 7 7 H 1.09004 * 109.58165 * 173.98929 * 6 3 2 8 8 C 1.53190 * 109.59115 * 53.55598 * 6 3 2 9 9 C 1.53041 * 109.31300 * 185.57713 * 8 6 3 10 10 C 1.53038 * 109.53650 * 61.36732 * 9 8 6 11 11 C 1.53194 * 109.31386 * 298.63089 * 10 9 8 12 12 N 1.46927 * 108.77293 * 54.63792 * 11 10 9 13 13 C 1.34777 * 120.63420 * 126.41326 * 12 11 10 14 14 O 1.21581 * 120.00264 * 174.27497 * 13 12 11 15 15 N 1.34786 * 119.99522 * 354.27393 * 13 12 11 16 16 C 1.46494 * 119.99963 * 184.90419 * 15 13 12 17 17 C 1.52994 * 109.47455 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47463 * 180.02562 * 17 16 15 19 19 H 1.07993 * 119.99955 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99786 * 180.02562 * 18 17 16 21 21 N 1.31519 * 119.99895 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00554 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47369 * 89.99721 * 22 20 18 24 24 H 1.48503 * 109.47571 * 210.00290 * 22 20 18 25 25 H 1.48509 * 109.46874 * 330.00077 * 22 20 18 26 26 H 1.09002 * 109.46860 * 299.99833 * 1 2 3 27 27 H 1.08998 * 109.47346 * 59.99528 * 1 2 3 28 28 H 1.08996 * 109.46895 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47221 * 240.00531 * 2 1 3 30 30 H 1.08997 * 109.47668 * 120.00035 * 2 1 3 31 31 H 1.09005 * 109.46899 * 185.83103 * 5 3 2 32 32 H 1.09001 * 109.47537 * 305.82734 * 5 3 2 33 33 H 1.09003 * 109.46848 * 65.83472 * 5 3 2 34 34 H 1.09000 * 109.49373 * 305.53091 * 8 6 3 35 35 H 1.09004 * 109.49280 * 65.62756 * 8 6 3 36 36 H 1.09004 * 109.46149 * 301.34560 * 9 8 6 37 37 H 1.08999 * 109.44644 * 181.37997 * 9 8 6 38 38 H 1.09002 * 109.49510 * 178.68303 * 10 9 8 39 39 H 1.08992 * 109.49858 * 58.58552 * 10 9 8 40 40 H 1.09003 * 109.58851 * 294.85070 * 11 10 9 41 41 H 1.09000 * 109.70803 * 174.49395 * 11 10 9 42 42 H 0.96998 * 119.99682 * 4.90813 * 15 13 12 43 43 H 1.09008 * 109.47276 * 300.00443 * 16 15 13 44 44 H 1.08999 * 109.47123 * 60.00021 * 16 15 13 45 45 H 1.08999 * 109.47258 * 300.00217 * 17 16 15 46 46 H 1.08999 * 109.46945 * 59.99903 * 17 16 15 47 47 H 0.97001 * 120.00376 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5866 1.9882 0.8276 5 6 1.6646 2.1162 -1.3215 6 6 3.5616 1.4455 0.1598 7 1 3.9381 2.4629 0.0533 8 6 4.1920 0.5469 -0.9088 9 6 5.6983 0.4432 -0.6586 10 6 5.9470 -0.1894 0.7125 11 6 5.3365 0.7009 1.7996 12 7 3.9185 0.9245 1.4865 13 6 2.9633 0.6573 2.3989 14 8 1.8045 0.9432 2.1676 15 7 3.2928 0.0729 3.5680 16 6 2.2439 -0.3154 4.5140 17 6 2.8821 -0.9514 5.7505 18 6 1.8030 -1.3514 6.7234 19 1 0.7657 -1.1706 6.4836 20 6 2.1402 -1.9483 7.9197 21 7 1.1984 -2.2979 8.7685 22 14 3.9345 -2.2605 8.3349 23 1 4.4889 -1.0836 9.0511 24 1 4.0405 -3.4621 9.2009 25 1 4.7007 -2.4838 7.0825 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.1158 3.1075 -1.3649 32 1 2.0303 1.5138 -2.1531 33 1 0.5804 2.2072 -1.3878 34 1 3.7456 -0.4462 -0.8584 35 1 4.0157 0.9760 -1.8951 36 1 6.1401 1.4394 -0.6845 37 1 6.1528 -0.1759 -1.4320 38 1 7.0198 -0.2843 0.8801 39 1 5.4841 -1.1755 0.7476 40 1 5.8600 1.6567 1.8258 41 1 5.4237 0.2098 2.7687 42 1 4.2245 -0.0904 3.7829 43 1 1.6776 0.5673 4.8112 44 1 1.5748 -1.0336 4.0400 45 1 3.4486 -1.8340 5.4537 46 1 3.5509 -0.2328 6.2244 47 1 1.4356 -2.7175 9.6103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380190.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -23.078317 kcal Electronic energy + Delta-G solvation = -23906.824996 eV Core-core repulsion = 20703.990130 eV Total energy + Delta-G solvation = -3202.834866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.90183 -37.67706 -36.23402 -34.57844 -32.99184 -32.47932 -31.05909 -29.85271 -28.84377 -25.71630 -24.42863 -24.33865 -22.89805 -21.17804 -20.89004 -19.85633 -19.11424 -17.38292 -16.85978 -15.89295 -15.73152 -14.98817 -14.78974 -14.54416 -14.38817 -14.13054 -14.00534 -13.83200 -13.30400 -13.10622 -12.84220 -12.59141 -12.57015 -12.18931 -11.97262 -11.63551 -11.51810 -11.45065 -11.30947 -11.17546 -10.98894 -10.81636 -10.50215 -10.36886 -10.18891 -10.09662 -10.02472 -9.90867 -9.33339 -8.73380 -8.61316 -8.49881 -8.21101 -6.09735 -4.09483 2.89150 3.25633 3.33200 3.34413 3.53175 4.16102 4.38678 4.61822 4.66232 4.68926 4.89602 5.07139 5.12735 5.20061 5.23312 5.29527 5.36640 5.49073 5.58987 5.67529 5.70572 5.73775 5.74935 5.83246 5.84659 5.90972 5.96508 6.07792 6.10869 6.16905 6.27995 6.32431 6.42521 6.53388 6.60578 6.62425 6.66963 6.84993 7.05783 7.13972 7.26897 7.31972 7.69733 8.30473 8.47329 8.94705 9.00760 9.50646 11.03394 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020973 B = 0.004372 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.722293 B = 6402.712286 C = 7396.649991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 C -0.101 4.101 4 H 0.125 0.875 5 C -0.151 4.151 6 C 0.172 3.828 7 H 0.063 0.937 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.135 4.135 11 C 0.112 3.888 12 N -0.631 5.631 13 C 0.701 3.299 14 O -0.573 6.573 15 N -0.746 5.746 16 C 0.149 3.851 17 C -0.022 4.022 18 C -0.521 4.521 19 H 0.076 0.924 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.267 1.267 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.388 0.612 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.020 0.980 46 H 0.016 0.984 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.084 6.796 -20.747 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.135 4.135 3 C -0.119 4.119 4 H 0.142 0.858 5 C -0.209 4.209 6 C 0.068 3.932 7 H 0.081 0.919 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.174 4.174 11 C -0.012 4.012 12 N -0.369 5.369 13 C 0.404 3.596 14 O -0.452 6.452 15 N -0.402 5.402 16 C 0.026 3.974 17 C -0.059 4.059 18 C -0.559 4.559 19 H 0.094 0.906 20 C -0.133 4.133 21 N -0.537 5.537 22 Si 0.709 3.291 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.191 1.191 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.223 0.777 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.166 6.892 -20.701 23.665 hybrid contribution 1.542 -0.395 0.472 1.661 sum 10.708 6.498 -20.229 23.793 Atomic orbital electron populations 1.21675 0.96373 1.00500 1.01344 1.21614 0.95865 0.95819 1.00248 1.21948 0.92749 0.98599 0.98577 0.85793 1.22012 1.01424 0.99759 0.97707 1.21097 0.96093 0.95593 0.80368 0.91874 1.22115 0.95254 1.01379 0.98684 1.21505 0.96445 1.00842 0.96789 1.21916 1.00734 0.99614 0.95103 1.21584 0.81767 0.99470 0.98387 1.47295 1.05286 1.70064 1.14294 1.15955 0.84609 0.78793 0.80290 1.90848 1.18216 1.58392 1.77775 1.45855 1.10956 1.64679 1.18692 1.21327 0.88725 0.98950 0.88352 1.19787 0.97523 0.95641 0.92984 1.20916 0.94110 1.39809 1.01060 0.90605 1.24993 0.97307 0.94923 0.96033 1.69906 1.32562 1.41667 1.09611 0.86761 0.85779 0.77987 0.78584 1.20249 1.21297 1.19147 0.91954 0.93907 0.94008 0.94532 0.91215 0.93419 0.93455 0.92530 0.90908 0.91008 0.92029 0.91960 0.90957 0.91360 0.91649 0.90340 0.77674 0.92177 0.92330 0.96195 0.96593 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.59 37.16 0.36 -1.62 16 2 C -0.10 -1.37 3.63 -26.73 -0.10 -1.46 16 3 C -0.10 -1.29 1.62 -90.62 -0.15 -1.43 16 4 H 0.12 1.98 5.60 -53.65 -0.30 1.68 16 5 C -0.15 -1.57 8.48 37.16 0.32 -1.25 16 6 C 0.17 1.96 2.65 -67.60 -0.18 1.78 16 7 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.14 -1.28 4.67 -26.61 -0.12 -1.40 16 9 C -0.12 -0.94 5.88 -26.69 -0.16 -1.10 16 10 C -0.14 -1.14 6.08 -26.61 -0.16 -1.31 16 11 C 0.11 1.11 6.44 -3.71 -0.02 1.08 16 12 N -0.63 -8.02 2.92 -170.90 -0.50 -8.52 16 13 C 0.70 11.45 6.78 -86.91 -0.59 10.86 16 14 O -0.57 -10.67 9.79 5.29 0.05 -10.62 16 15 N -0.75 -12.50 5.47 -65.23 -0.36 -12.86 16 16 C 0.15 3.06 5.62 -4.05 -0.02 3.03 16 17 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 18 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 19 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 22 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 26 H 0.06 0.99 7.67 -51.93 -0.40 0.59 16 27 H 0.04 0.52 6.74 -51.93 -0.35 0.17 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.46 6.61 -51.93 -0.34 0.12 16 30 H 0.07 1.17 5.25 -51.93 -0.27 0.89 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.44 7.04 -51.93 -0.37 0.08 16 33 H 0.06 0.60 6.89 -51.93 -0.36 0.24 16 34 H 0.07 0.78 6.17 -51.93 -0.32 0.46 16 35 H 0.07 0.60 7.04 -51.93 -0.37 0.23 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.77 5.56 -51.93 -0.29 0.48 16 42 H 0.39 5.64 5.93 -40.82 -0.24 5.39 16 43 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 46 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 344.08 15.07 5.19 5.19 Total: -1.00 -30.52 344.08 -9.08 -39.60 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -8.19 Total: 3.92 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -1.38 Total: -6.48 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.08 Total: -48.02 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.05 Total: -10.62 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.52 -9.08 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380190.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.521 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds