Wall clock time and date at job start Tue Mar 31 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47321 * 2 1 4 4 H 1.08996 * 109.46834 * 303.52688 * 3 2 1 5 5 C 1.50699 * 109.47542 * 183.52432 * 3 2 1 6 6 H 1.07995 * 119.99808 * 301.50417 * 5 3 2 7 7 C 1.37877 * 119.99903 * 121.49383 * 5 3 2 8 8 N 1.31510 * 119.99927 * 173.07204 * 7 5 3 9 9 Si 1.86799 * 120.00049 * 353.07764 * 7 5 3 10 10 H 1.48505 * 109.47460 * 84.88811 * 9 7 5 11 11 H 1.48505 * 109.47003 * 204.88778 * 9 7 5 12 12 H 1.48496 * 109.47302 * 324.88438 * 9 7 5 13 13 N 1.46899 * 109.47009 * 63.52379 * 3 2 1 14 14 C 1.46851 * 110.99874 * 190.00288 * 13 3 2 15 15 C 1.53034 * 109.51437 * 174.16857 * 14 13 3 16 16 C 1.53102 * 109.29286 * 59.18500 * 15 14 13 17 17 N 1.46903 * 109.57740 * 182.40525 * 16 15 14 18 18 C 1.47015 * 111.00210 * 58.34408 * 17 16 15 19 19 C 1.53093 * 109.25889 * 177.60816 * 18 17 16 20 20 O 1.43014 * 109.26006 * 56.84381 * 19 18 17 21 21 C 1.43013 * 113.74231 * 301.33364 * 20 19 18 22 22 C 1.47007 * 110.99845 * 294.70634 * 17 16 15 23 23 C 1.53121 * 109.15182 * 302.33535 * 16 15 14 24 24 C 1.46851 * 111.00076 * 65.79674 * 13 3 2 25 25 H 1.08991 * 109.47232 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47163 * 300.00481 * 1 2 3 27 27 H 1.08996 * 109.46959 * 59.99917 * 1 2 3 28 28 H 1.08998 * 109.47656 * 239.99708 * 2 1 3 29 29 H 1.09004 * 109.47118 * 119.99233 * 2 1 3 30 30 H 0.97001 * 120.00480 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.46071 * 294.17611 * 14 13 3 32 32 H 1.09000 * 109.46164 * 54.15550 * 14 13 3 33 33 H 1.09004 * 109.50558 * 179.11252 * 15 14 13 34 34 H 1.08997 * 109.50391 * 299.23047 * 15 14 13 35 35 H 1.08999 * 109.52493 * 62.23880 * 16 15 14 36 36 H 1.08998 * 109.50398 * 297.54432 * 18 17 16 37 37 H 1.08998 * 109.50659 * 57.66708 * 18 17 16 38 38 H 1.09005 * 109.50228 * 296.91154 * 19 18 17 39 39 H 1.08996 * 109.54361 * 176.80741 * 19 18 17 40 40 H 1.09000 * 109.50770 * 298.73650 * 21 20 19 41 41 H 1.08994 * 109.54810 * 178.62522 * 21 20 19 42 42 H 1.09000 * 109.51031 * 302.32737 * 22 17 16 43 43 H 1.09006 * 109.51099 * 62.41701 * 22 17 16 44 44 H 1.08994 * 109.50862 * 297.71884 * 23 16 15 45 45 H 1.08994 * 109.50414 * 177.59085 * 23 16 15 46 46 H 1.09004 * 109.45571 * 305.85257 * 24 13 3 47 47 H 1.08993 * 109.46158 * 65.82870 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6260 1.9742 -0.8567 5 6 3.5445 1.4435 -0.0873 6 1 4.1295 0.9388 0.6673 7 6 4.1740 2.0884 -1.1308 8 7 5.4838 2.2071 -1.1360 9 14 3.1666 2.7937 -2.5368 10 1 2.6881 4.1511 -2.1709 11 1 4.0100 2.8782 -3.7563 12 1 2.0010 1.9125 -2.8013 13 7 1.6211 2.1100 1.2397 14 6 1.8836 3.5534 1.1748 15 6 1.3048 4.2345 2.4170 16 6 1.9503 3.6355 3.6694 17 7 1.3577 4.2444 4.8678 18 6 -0.0967 4.0324 4.9022 19 6 -0.6636 4.6291 6.1931 20 8 -0.3165 6.0146 6.2645 21 6 1.0925 6.2576 6.2341 22 6 1.6772 5.6773 4.9436 23 6 1.7036 2.1244 3.6880 24 6 2.2709 1.5042 2.4091 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 5.9267 2.6612 -1.8699 31 1 2.9592 3.7254 1.1342 32 1 1.4155 3.9678 0.2820 33 1 1.5135 5.3037 2.3764 34 1 0.2272 4.0746 2.4510 35 1 3.0228 3.8294 3.6547 36 1 -0.5561 4.5210 4.0429 37 1 -0.3096 2.9639 4.8708 38 1 -0.2443 4.1041 7.0514 39 1 -1.7486 4.5250 6.1972 40 1 1.5629 5.7799 7.0936 41 1 1.2783 7.3310 6.2674 42 1 2.7592 5.8096 4.9426 43 1 1.2468 6.1922 4.0846 44 1 0.6322 1.9312 3.7418 45 1 2.1972 1.6857 4.5550 46 1 2.0842 0.4303 2.4124 47 1 3.3446 1.6860 2.3627 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690332347.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:35 Heat of formation + Delta-G solvation = -40.354433 kcal Electronic energy + Delta-G solvation = -24230.199972 eV Core-core repulsion = 21026.615957 eV Total energy + Delta-G solvation = -3203.584015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03691 -38.29009 -36.13064 -33.40295 -32.10317 -31.33005 -30.44930 -29.97759 -27.44914 -26.05272 -24.18179 -23.10771 -22.90442 -21.82594 -20.74148 -19.21091 -18.54349 -16.91765 -16.70180 -16.16405 -15.40257 -15.10932 -14.97428 -14.64248 -14.29475 -14.02548 -13.94492 -13.51808 -13.10645 -13.07503 -12.68943 -12.31597 -12.23239 -11.99433 -11.89691 -11.57126 -11.49377 -11.30269 -11.05365 -10.97471 -10.68060 -10.46661 -10.43152 -10.26300 -10.07472 -9.84008 -9.74723 -9.69126 -9.55794 -9.12641 -8.63194 -8.17283 -7.08902 -6.17904 -4.18933 3.20254 3.30024 3.31890 3.72058 3.90740 4.32399 4.82903 4.86500 4.95697 4.98972 5.10920 5.19632 5.24005 5.32955 5.36329 5.48191 5.53963 5.61450 5.74489 5.79206 5.81160 5.88844 5.92873 6.07242 6.08602 6.15113 6.15839 6.24133 6.31449 6.43479 6.45900 6.59528 6.68686 6.74365 6.84719 6.93913 6.97245 7.01625 7.11317 7.14522 7.17826 7.24992 7.60934 8.11533 8.26599 8.46360 8.87771 9.47092 10.94999 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022724 B = 0.004856 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.880358 B = 5764.422398 C = 6290.619276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.105 4.105 3 C 0.171 3.829 4 H 0.043 0.957 5 C -0.538 4.538 6 H 0.075 0.925 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.265 1.265 13 N -0.531 5.531 14 C 0.066 3.934 15 C -0.144 4.144 16 C 0.087 3.913 17 N -0.531 5.531 18 C 0.012 3.988 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.014 3.986 23 C -0.104 4.104 24 C 0.062 3.938 25 H 0.032 0.968 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.264 0.736 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.095 4.419 11.725 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C 0.065 3.935 4 H 0.061 0.939 5 C -0.577 4.577 6 H 0.093 0.907 7 C -0.125 4.125 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.256 5.256 14 C -0.063 4.063 15 C -0.183 4.183 16 C -0.021 4.021 17 N -0.254 5.254 18 C -0.116 4.116 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.012 4.012 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.067 4.067 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.377 4.342 12.109 16.527 hybrid contribution 0.475 0.745 -1.843 2.044 sum -9.902 5.087 10.265 15.142 Atomic orbital electron populations 1.21742 0.97732 0.99136 1.01434 1.21601 0.93529 0.98523 1.00677 1.19754 0.94235 0.91138 0.88360 0.93902 1.21542 0.90519 1.34658 1.10995 0.90710 1.25090 0.94663 0.95039 0.97708 1.69920 1.08323 1.42711 1.32263 0.86960 0.80562 0.79957 0.82623 1.20158 1.21552 1.18991 1.62585 1.57277 1.01767 1.03971 1.21711 0.99458 0.89654 0.95467 1.22231 1.00967 0.98744 0.96387 1.21802 0.98740 0.95088 0.86468 1.62514 1.10548 1.12505 1.39882 1.22843 0.88796 1.02203 0.97772 1.22681 0.99914 0.81875 0.96832 1.87953 1.23173 1.24972 1.94692 1.22645 0.81352 1.00491 0.96686 1.22775 1.01519 0.89125 0.98017 1.21676 1.01221 0.93299 0.98065 1.21853 0.97648 0.98168 0.89062 0.94916 0.92215 0.94202 0.92879 0.93003 0.92643 0.93590 0.92660 0.92767 0.91642 0.90081 0.93458 0.89186 0.92543 0.88804 0.92490 0.88806 0.89803 0.93643 0.91939 0.91918 0.91465 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.79 37.16 0.36 -2.10 16 2 C -0.10 -2.12 5.29 -26.73 -0.14 -2.26 16 3 C 0.17 3.86 1.70 -68.86 -0.12 3.74 16 4 H 0.04 1.02 4.58 -51.93 -0.24 0.78 16 5 C -0.54 -14.20 7.09 -34.44 -0.24 -14.45 16 6 H 0.07 2.17 7.09 -52.49 -0.37 1.80 16 7 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.89 -26.46 13.96 55.43 0.77 -25.68 16 9 Si 0.87 21.11 26.98 -169.99 -4.59 16.52 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.26 -6.23 6.75 56.52 0.38 -5.85 16 13 N -0.53 -10.57 3.99 -228.07 -0.91 -11.48 16 14 C 0.07 1.30 5.19 -3.83 -0.02 1.28 16 15 C -0.14 -2.29 4.67 -26.66 -0.12 -2.42 16 16 C 0.09 1.30 2.30 -67.60 -0.16 1.15 16 17 N -0.53 -6.95 4.72 -226.20 -1.07 -8.02 16 18 C 0.01 0.14 4.86 -3.71 -0.02 0.13 16 19 C 0.06 0.68 7.01 37.21 0.26 0.95 16 20 O -0.39 -4.80 10.83 -35.23 -0.38 -5.18 16 21 C 0.07 0.69 7.01 37.21 0.26 0.96 16 22 C 0.01 0.17 5.32 -3.71 -0.02 0.15 16 23 C -0.10 -1.59 5.25 -26.65 -0.14 -1.73 16 24 C 0.06 1.15 4.70 -3.83 -0.02 1.13 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 1.02 7.71 -51.93 -0.40 0.62 16 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.05 1.02 6.28 -51.93 -0.33 0.70 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.05 1.04 7.60 -51.93 -0.39 0.64 16 32 H 0.05 1.12 8.02 -51.93 -0.42 0.70 16 33 H 0.05 0.83 6.72 -51.93 -0.35 0.48 16 34 H 0.06 1.03 6.32 -51.93 -0.33 0.71 16 35 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 36 H 0.05 0.62 6.37 -51.93 -0.33 0.29 16 37 H 0.09 1.05 6.18 -51.93 -0.32 0.73 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 43 H 0.05 0.58 6.63 -51.93 -0.34 0.24 16 44 H 0.06 0.92 6.27 -51.93 -0.33 0.60 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 1.24 6.15 -51.93 -0.32 0.92 16 47 H 0.05 0.99 6.72 -51.93 -0.35 0.64 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -28.39 339.40 -9.46 -37.85 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -8.19 Total: 2.31 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -0.21 Total: -11.43 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: -1.20 Total: -45.19 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.38 Total: -5.18 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.59 Total: 16.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.39 -9.46 -37.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690332347.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.504 kcal (2) G-P(sol) polarization free energy of solvation -28.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds