Wall clock time and date at job start Tue Mar 31 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09001 * 109.47326 * 54.99931 * 3 2 1 5 5 C 1.50699 * 109.47053 * 175.00035 * 3 2 1 6 6 H 1.08004 * 120.00307 * 119.99902 * 5 3 2 7 7 C 1.37884 * 119.99822 * 299.99692 * 5 3 2 8 8 N 1.31514 * 119.99701 * 180.02562 * 7 5 3 9 9 Si 1.86791 * 119.99955 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47148 * 90.00121 * 9 7 5 11 11 H 1.48505 * 109.47168 * 209.99818 * 9 7 5 12 12 H 1.48496 * 109.47417 * 330.00051 * 9 7 5 13 13 N 1.46895 * 109.46799 * 294.99463 * 3 2 1 14 14 C 1.46846 * 111.00692 * 299.21360 * 13 3 2 15 15 C 1.53029 * 109.52748 * 174.16185 * 14 13 3 16 16 C 1.53119 * 109.28004 * 59.17473 * 15 14 13 17 17 N 1.46901 * 109.57323 * 182.41027 * 16 15 14 18 18 C 1.47010 * 111.00184 * 58.35189 * 17 16 15 19 19 C 1.53101 * 109.25917 * 177.60580 * 18 17 16 20 20 O 1.43008 * 109.25823 * 56.84867 * 19 18 17 21 21 C 1.43018 * 113.73876 * 301.32823 * 20 19 18 22 22 C 1.47018 * 111.00134 * 294.71544 * 17 16 15 23 23 C 1.53115 * 109.16476 * 302.34574 * 16 15 14 24 24 C 1.46848 * 111.00134 * 174.99991 * 13 3 2 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 0.96997 * 120.00141 * 179.97438 * 8 7 5 31 31 H 1.09005 * 109.45481 * 294.17657 * 14 13 3 32 32 H 1.08997 * 109.45845 * 54.14046 * 14 13 3 33 33 H 1.09008 * 109.50510 * 299.23635 * 15 14 13 34 34 H 1.09003 * 109.50496 * 179.11950 * 15 14 13 35 35 H 1.08997 * 109.52311 * 62.25510 * 16 15 14 36 36 H 1.08993 * 109.50937 * 297.53942 * 18 17 16 37 37 H 1.09004 * 109.50695 * 57.67445 * 18 17 16 38 38 H 1.09002 * 109.50380 * 296.91329 * 19 18 17 39 39 H 1.08996 * 109.54033 * 176.80906 * 19 18 17 40 40 H 1.08999 * 109.51085 * 298.73796 * 21 20 19 41 41 H 1.09003 * 109.54264 * 178.62265 * 21 20 19 42 42 H 1.09002 * 109.50487 * 302.32680 * 22 17 16 43 43 H 1.08996 * 109.50234 * 62.41528 * 22 17 16 44 44 H 1.08999 * 109.50501 * 297.72029 * 23 16 15 45 45 H 1.08997 * 109.54032 * 177.61473 * 23 16 15 46 46 H 1.09004 * 109.46321 * 305.85762 * 24 13 3 47 47 H 1.09000 * 109.46332 * 65.83235 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1432 0.8784 1.2281 8 7 5.4539 0.8805 1.3363 9 14 3.0963 0.1090 2.5701 10 1 2.8755 -1.3271 2.2634 11 1 3.7936 0.2349 3.8752 12 1 1.7876 0.8074 2.6386 13 7 1.6515 2.0992 -1.2553 14 6 2.2355 1.4097 -2.4128 15 6 1.6949 2.0291 -3.7035 16 6 2.0526 3.5175 -3.7384 17 7 1.4870 4.1313 -4.9473 18 6 0.0269 3.9647 -4.9890 19 6 -0.5264 4.6688 -6.2308 20 8 0.1122 4.1406 -7.3963 21 6 1.5349 4.2866 -7.3893 22 6 2.1091 3.5786 -6.1593 23 6 1.4735 4.2029 -2.4978 24 6 2.0207 3.5204 -1.2420 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.8770 0.4827 2.1133 31 1 3.3204 1.5126 -2.3872 32 1 1.9701 0.3531 -2.3779 33 1 0.6114 1.9144 -3.7362 34 1 2.1406 1.5274 -4.5624 35 1 3.1366 3.6316 -3.7451 36 1 -0.2173 2.9034 -5.0332 37 1 -0.4152 4.4036 -4.0945 38 1 -0.3292 5.7385 -6.1609 39 1 -1.6013 4.5004 -6.2968 40 1 1.7921 5.3452 -7.3531 41 1 1.9515 3.8415 -8.2929 42 1 3.1870 3.7357 -6.1191 43 1 1.8989 2.5109 -6.2218 44 1 0.3866 4.1223 -2.5114 45 1 1.7605 5.2544 -2.4948 46 1 1.5992 3.9969 -0.3568 47 1 3.1065 3.6134 -1.2221 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690332351.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:38 Heat of formation + Delta-G solvation = -30.813396 kcal Electronic energy + Delta-G solvation = -24147.326692 eV Core-core repulsion = 20944.156408 eV Total energy + Delta-G solvation = -3203.170284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.09136 -38.38907 -36.22437 -33.62371 -31.99220 -31.32925 -30.45782 -30.16463 -27.44604 -26.13117 -24.20940 -23.11587 -22.69480 -22.15855 -20.60140 -19.50972 -18.78349 -16.73784 -16.67647 -16.19672 -15.64351 -15.14585 -14.98102 -14.60441 -14.44022 -14.13389 -14.03452 -13.57538 -13.25594 -12.94131 -12.70699 -12.45363 -12.31490 -11.90963 -11.81627 -11.61519 -11.51881 -11.39284 -11.12405 -10.95140 -10.72194 -10.53372 -10.42562 -10.38500 -10.03205 -9.93182 -9.66799 -9.59428 -9.56345 -9.22700 -8.58696 -8.20682 -7.16697 -6.14118 -4.14694 3.23665 3.35051 3.36988 3.68858 3.86706 4.35276 4.79202 4.83584 4.92147 4.95699 5.07700 5.15912 5.17310 5.26082 5.29571 5.44904 5.50490 5.55928 5.70537 5.74160 5.77314 5.85335 5.93378 5.99124 6.00137 6.08188 6.11431 6.18514 6.24838 6.37447 6.42734 6.53768 6.66393 6.70291 6.78611 6.80823 6.91620 6.97617 7.05939 7.07481 7.10908 7.23668 7.55127 8.08961 8.15424 8.42848 8.87900 9.49624 10.98715 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031442 B = 0.004269 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.320049 B = 6557.846602 C = 6892.821247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.298 1.298 12 H -0.264 1.264 13 N -0.525 5.525 14 C 0.064 3.936 15 C -0.146 4.146 16 C 0.086 3.914 17 N -0.531 5.531 18 C 0.012 3.988 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.014 3.986 23 C -0.105 4.105 24 C 0.063 3.937 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.263 0.737 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.963 5.670 -12.897 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.249 5.249 14 C -0.065 4.065 15 C -0.185 4.185 16 C -0.022 4.022 17 N -0.255 5.255 18 C -0.116 4.116 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.012 4.012 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.066 4.066 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.321 6.030 -12.975 17.642 hybrid contribution 0.633 -1.324 1.173 1.879 sum -9.688 4.706 -11.802 15.977 Atomic orbital electron populations 1.21731 0.97393 0.99306 1.01616 1.21960 0.94030 0.99433 1.00622 1.19701 0.94508 0.90434 0.88004 0.94376 1.21617 0.90635 1.38928 1.07049 0.90665 1.24983 0.94708 0.95333 0.97857 1.69914 1.08852 1.45100 1.29725 0.86854 0.80716 0.79809 0.80862 1.20591 1.22624 1.18868 1.62322 1.57985 1.01438 1.03198 1.21854 0.97748 0.97949 0.88998 1.22267 1.01544 0.96457 0.98256 1.21809 0.99209 0.92187 0.88974 1.62506 1.03970 1.56974 1.02027 1.22848 0.89247 1.00161 0.99367 1.22682 0.96961 0.97418 0.84255 1.87956 1.19565 1.82056 1.41186 1.22648 0.80966 1.00114 0.97467 1.22776 0.99976 0.97924 0.90734 1.21667 1.00560 0.98724 0.93318 1.21851 0.99093 0.89524 0.96119 0.94854 0.92035 0.93931 0.93543 0.92271 0.92675 0.93891 0.91273 0.91574 0.92657 0.90186 0.93403 0.89188 0.92536 0.88769 0.92486 0.88775 0.89819 0.93595 0.91746 0.91713 0.91564 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.80 37.16 0.36 -2.21 16 2 C -0.12 -2.61 4.72 -26.73 -0.13 -2.74 16 3 C 0.18 4.11 1.34 -68.86 -0.09 4.02 16 4 H 0.04 0.92 7.14 -51.93 -0.37 0.55 16 5 C -0.54 -14.53 7.77 -34.44 -0.27 -14.80 16 6 H 0.08 2.20 6.08 -52.48 -0.32 1.88 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 8 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.89 21.68 24.41 -169.99 -4.15 17.53 16 10 H -0.28 -6.69 6.83 56.52 0.39 -6.30 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.19 6.53 56.52 0.37 -5.82 16 13 N -0.53 -10.21 4.10 -228.08 -0.93 -11.15 16 14 C 0.06 1.17 4.80 -3.84 -0.02 1.15 16 15 C -0.15 -2.19 4.68 -26.65 -0.12 -2.32 16 16 C 0.09 1.23 2.29 -67.59 -0.16 1.07 16 17 N -0.53 -6.66 4.72 -226.18 -1.07 -7.73 16 18 C 0.01 0.14 4.86 -3.71 -0.02 0.12 16 19 C 0.06 0.66 7.01 37.21 0.26 0.92 16 20 O -0.39 -4.65 10.83 -35.23 -0.38 -5.03 16 21 C 0.07 0.66 7.01 37.21 0.26 0.92 16 22 C 0.01 0.16 5.32 -3.71 -0.02 0.14 16 23 C -0.10 -1.54 5.25 -26.65 -0.14 -1.68 16 24 C 0.06 1.15 5.12 -3.83 -0.02 1.13 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.06 7.75 -51.93 -0.40 0.66 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.06 3.21 -51.93 -0.17 0.89 16 29 H 0.06 1.24 6.05 -51.93 -0.31 0.93 16 30 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.04 0.91 6.62 -51.93 -0.34 0.56 16 32 H 0.07 1.30 5.93 -51.93 -0.31 0.99 16 33 H 0.07 0.99 6.32 -51.92 -0.33 0.67 16 34 H 0.05 0.79 6.72 -51.93 -0.35 0.44 16 35 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 36 H 0.05 0.60 6.37 -51.93 -0.33 0.27 16 37 H 0.09 1.01 6.18 -51.93 -0.32 0.69 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 43 H 0.05 0.56 6.63 -51.93 -0.34 0.21 16 44 H 0.06 0.92 6.27 -51.93 -0.33 0.59 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 47 H 0.04 0.89 6.96 -51.93 -0.36 0.53 16 LS Contribution 331.77 15.07 5.00 5.00 Total: -1.00 -28.94 331.77 -8.94 -37.89 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -7.99 Total: 1.95 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.19 Total: -12.29 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -1.23 Total: -45.04 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.38 Total: -5.03 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.15 Total: 17.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.94 -8.94 -37.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690332351.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.072 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds