Wall clock time and date at job start Tue Mar 31 2020 05:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47095 * 2 1 4 4 H 1.09004 * 109.49389 * 54.93898 * 3 2 1 5 5 C 1.53039 * 109.52355 * 294.86079 * 3 2 1 6 6 C 1.53049 * 109.53682 * 178.66518 * 5 3 2 7 7 C 1.52762 * 109.38290 * 61.23788 * 6 5 3 8 8 H 1.08993 * 109.50805 * 185.70478 * 7 6 5 9 9 C 1.53001 * 109.43289 * 65.42250 * 7 6 5 10 10 N 1.46924 * 109.00796 * 305.58786 * 7 6 5 11 11 C 1.34770 * 120.63240 * 233.58315 * 10 7 6 12 12 O 1.21286 * 119.99886 * 359.72443 * 11 10 7 13 13 C 1.50701 * 120.00293 * 179.72082 * 11 10 7 14 14 H 1.09002 * 109.47060 * 40.00174 * 13 11 10 15 15 N 1.46896 * 109.47239 * 160.00327 * 13 11 10 16 16 C 1.52997 * 109.47212 * 280.00118 * 13 11 10 17 17 C 1.52994 * 109.47404 * 174.99684 * 16 13 11 18 18 C 1.50698 * 109.47502 * 179.97438 * 17 16 13 19 19 H 1.08005 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00426 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00640 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00012 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47190 * 89.99630 * 22 20 18 24 24 H 1.48502 * 109.47178 * 210.00167 * 22 20 18 25 25 H 1.48498 * 109.46759 * 329.99747 * 22 20 18 26 26 C 1.46931 * 118.73778 * 53.30809 * 10 7 6 27 27 H 1.08993 * 109.47631 * 59.99620 * 1 2 3 28 28 H 1.09005 * 109.46922 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46892 * 299.98899 * 1 2 3 30 30 H 1.09001 * 109.46814 * 240.00318 * 2 1 3 31 31 H 1.09000 * 109.47317 * 120.00288 * 2 1 3 32 32 H 1.08996 * 109.46184 * 298.68406 * 5 3 2 33 33 H 1.09000 * 109.46677 * 58.64479 * 5 3 2 34 34 H 1.09004 * 109.49728 * 181.31560 * 6 5 3 35 35 H 1.09000 * 109.49527 * 301.40966 * 6 5 3 36 36 H 1.08997 * 109.46862 * 300.52384 * 9 7 6 37 37 H 1.09010 * 109.46722 * 60.51914 * 9 7 6 38 38 H 1.08993 * 109.47091 * 180.51892 * 9 7 6 39 39 H 1.00907 * 110.99811 * 296.04225 * 15 13 11 40 40 H 1.00900 * 111.00550 * 59.99964 * 15 13 11 41 41 H 1.09000 * 109.47325 * 294.99852 * 16 13 11 42 42 H 1.09008 * 109.47017 * 54.99761 * 16 13 11 43 43 H 1.09000 * 109.47476 * 300.00087 * 17 16 13 44 44 H 1.09008 * 109.46970 * 60.00049 * 17 16 13 45 45 H 0.96993 * 120.00296 * 179.97438 * 21 20 18 46 46 H 1.09007 * 109.58477 * 66.43339 * 26 10 7 47 47 H 1.09003 * 109.58752 * 186.85407 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9822 0.8411 5 6 1.6388 2.1268 -1.3087 6 6 2.1198 3.5796 -1.2950 7 6 3.6430 3.6083 -1.1811 8 1 3.9803 4.6387 -1.0693 9 6 4.2592 2.9977 -2.4414 10 7 4.0497 2.8265 -0.0056 11 6 4.8462 3.3680 0.9372 12 8 5.2382 4.5094 0.8172 13 6 5.2495 2.5552 2.1405 14 1 5.4637 1.5318 1.8324 15 7 6.4493 3.1446 2.7496 16 6 4.1088 2.5528 3.1600 17 6 4.4675 1.6276 4.3245 18 6 3.3442 1.6257 5.3291 19 1 2.4623 2.2243 5.1542 20 6 3.4421 0.8600 6.4714 21 7 2.4616 0.8579 7.3479 22 14 4.9676 -0.1747 6.7744 23 1 5.9682 0.6264 7.5242 24 1 4.6015 -1.3764 7.5663 25 1 5.5458 -0.5966 5.4733 26 6 3.5666 1.4451 0.1258 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 2.0945 1.6013 -2.1479 33 1 0.5539 2.1045 -1.4126 34 1 1.8134 4.0731 -2.2174 35 1 1.6838 4.0992 -0.4418 36 1 3.9145 1.9697 -2.5530 37 1 3.9562 3.5791 -3.3123 38 1 5.3458 3.0094 -2.3568 39 1 7.2350 3.0990 2.1180 40 1 6.2764 4.0941 3.0438 41 1 3.9539 3.5647 3.5343 42 1 3.1953 2.1983 2.6824 43 1 4.6224 0.6157 3.9503 44 1 5.3810 1.9822 4.8022 45 1 2.5304 0.3189 8.1514 46 1 3.9994 0.8301 -0.6633 47 1 3.8537 1.0486 1.0998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614324.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:50 Heat of formation + Delta-G solvation = -66.279277 kcal Electronic energy + Delta-G solvation = -23911.262190 eV Core-core repulsion = 20706.553990 eV Total energy + Delta-G solvation = -3204.708200 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.61141 -38.20753 -35.56569 -34.72910 -32.95962 -32.64189 -30.47944 -30.18658 -28.01620 -26.79126 -24.63570 -23.79223 -23.39772 -21.15063 -20.18599 -19.96445 -18.37591 -17.40085 -16.70612 -15.98915 -15.59039 -15.29052 -14.92891 -14.72937 -14.22902 -14.10890 -14.03864 -13.56557 -13.39763 -13.01462 -12.95256 -12.58167 -12.36174 -12.32247 -12.26223 -11.96154 -11.70297 -11.43980 -11.24015 -11.02499 -10.92116 -10.85424 -10.82337 -10.41600 -10.38599 -10.20201 -9.95859 -9.70161 -9.56040 -9.10645 -8.60508 -8.49520 -8.34936 -5.98828 -3.96264 2.72630 3.02217 3.37733 3.44293 3.49526 4.44529 4.51743 4.56991 4.69792 4.82022 4.82235 4.94581 4.99397 5.14411 5.18233 5.28533 5.33684 5.36565 5.39286 5.42378 5.52240 5.52376 5.63502 5.69832 5.74145 5.75807 5.80993 5.87689 5.94958 6.02387 6.04843 6.16765 6.28217 6.28490 6.39828 6.48316 6.59390 6.88747 7.27698 7.38955 7.48482 7.58224 7.68599 7.87093 8.26656 8.58850 9.05953 9.64364 11.14674 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.005423 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.772256 B = 5162.232399 C = 6373.647528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.103 4.103 4 H 0.081 0.919 5 C -0.115 4.115 6 C -0.129 4.129 7 C 0.133 3.867 8 H 0.095 0.905 9 C -0.159 4.159 10 N -0.604 5.604 11 C 0.487 3.513 12 O -0.555 6.555 13 C 0.074 3.926 14 H 0.097 0.903 15 N -0.811 5.811 16 C -0.088 4.088 17 C -0.003 4.003 18 C -0.519 4.519 19 H 0.068 0.932 20 C 0.067 3.933 21 N -0.906 5.906 22 Si 0.881 3.119 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.264 1.264 26 C 0.106 3.894 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.334 0.666 40 H 0.349 0.651 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -0.035 -21.049 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.122 4.122 4 H 0.099 0.901 5 C -0.152 4.152 6 C -0.167 4.167 7 C 0.029 3.971 8 H 0.113 0.887 9 C -0.217 4.217 10 N -0.337 5.337 11 C 0.274 3.726 12 O -0.433 6.433 13 C -0.042 4.042 14 H 0.115 0.885 15 N -0.339 5.339 16 C -0.126 4.126 17 C -0.041 4.041 18 C -0.557 4.557 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.546 5.546 22 Si 0.709 3.291 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.017 4.017 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.030 0.970 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.440 -0.073 -20.367 20.372 hybrid contribution 0.567 0.095 -0.568 0.808 sum 1.006 0.022 -20.936 20.960 Atomic orbital electron populations 1.21791 0.95651 1.01577 1.01939 1.21496 0.96257 0.95496 1.02353 1.21559 0.94930 0.96921 0.98832 0.90060 1.21650 1.01050 0.95146 0.97386 1.21849 0.94966 0.97535 1.02393 1.21032 0.94182 0.96874 0.84969 0.88689 1.22128 1.01012 1.01549 0.97043 1.48276 1.49305 1.14162 1.21969 1.22584 0.77322 0.88158 0.84509 1.90631 1.55831 1.18789 1.78084 1.21880 0.93872 0.97656 0.90780 0.88523 1.59054 1.04734 1.26925 1.43221 1.21496 0.93722 1.01927 0.95453 1.19477 0.97717 0.93803 0.93088 1.21163 1.03510 1.27425 1.03646 0.91337 1.24999 0.96094 0.96506 0.95814 1.69921 1.32350 1.41346 1.10964 0.86756 0.83765 0.79990 0.78619 1.20289 1.21728 1.18906 1.21921 0.94209 0.82293 1.03309 0.92855 0.92822 0.92318 0.92150 0.91035 0.91745 0.91437 0.91017 0.91442 0.92044 0.91737 0.92617 0.85393 0.83660 0.92305 0.92059 0.96999 0.95277 0.92862 0.91581 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.67 37.16 0.36 -1.09 16 2 C -0.12 -1.15 5.41 -26.73 -0.14 -1.30 16 3 C -0.10 -1.10 2.33 -90.51 -0.21 -1.31 16 4 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 5 C -0.11 -1.04 4.75 -26.69 -0.13 -1.17 16 6 C -0.13 -1.28 5.53 -26.83 -0.15 -1.43 16 7 C 0.13 1.53 3.19 -67.82 -0.22 1.31 16 8 H 0.10 1.28 7.01 -51.93 -0.36 0.92 16 9 C -0.16 -1.48 9.02 37.16 0.34 -1.14 16 10 N -0.60 -7.88 2.68 -165.47 -0.44 -8.33 16 11 C 0.49 7.74 6.94 -10.99 -0.08 7.67 16 12 O -0.56 -10.28 15.66 5.55 0.09 -10.19 16 13 C 0.07 1.20 2.29 -68.87 -0.16 1.04 16 14 H 0.10 1.46 6.80 -51.93 -0.35 1.11 16 15 N -0.81 -13.08 8.44 -5.66 -0.05 -13.13 16 16 C -0.09 -1.71 4.45 -26.74 -0.12 -1.83 16 17 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 18 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 19 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 21 N -0.91 -28.06 13.96 55.43 0.77 -27.29 16 22 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 C 0.11 1.20 4.63 -3.71 -0.02 1.19 16 27 H 0.05 0.45 6.54 -51.93 -0.34 0.11 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.53 6.49 -51.93 -0.34 0.19 16 33 H 0.07 0.58 6.51 -51.93 -0.34 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.52 5.74 -51.93 -0.30 0.23 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.33 4.67 9.06 -39.29 -0.36 4.32 16 40 H 0.35 5.78 8.58 -39.29 -0.34 5.44 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.15 6.97 -51.92 -0.36 0.79 16 43 H 0.01 0.27 7.20 -51.93 -0.37 -0.10 16 44 H 0.03 0.71 7.18 -51.92 -0.37 0.33 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 46 H 0.07 0.65 7.52 -51.93 -0.39 0.26 16 47 H 0.10 1.22 4.84 -51.93 -0.25 0.97 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -32.05 354.39 -8.31 -40.36 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -8.29 Total: 7.39 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.06 Total: -11.47 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 0.28 Total: -48.74 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.05 -8.31 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614324.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.919 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds