Wall clock time and date at job start Tue Mar 31 2020 05:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 H 1.08990 * 109.52348 * 55.07892 * 3 2 1 5 5 C 1.53041 * 109.49526 * 295.00040 * 3 2 1 6 6 C 1.53036 * 109.53807 * 178.68351 * 5 3 2 7 7 C 1.53190 * 109.31273 * 61.36337 * 6 5 3 8 8 H 1.09007 * 109.58645 * 185.57808 * 7 6 5 9 9 C 1.53002 * 109.70365 * 65.22642 * 7 6 5 10 10 N 1.46923 * 108.77809 * 305.36826 * 7 6 5 11 11 C 1.34784 * 120.62964 * 233.58685 * 10 7 6 12 12 O 1.21279 * 119.99925 * 359.97438 * 11 10 7 13 13 C 1.50700 * 119.99961 * 179.97438 * 11 10 7 14 14 H 1.09006 * 109.47033 * 320.00067 * 13 11 10 15 15 N 1.46896 * 109.47339 * 200.00128 * 13 11 10 16 16 C 1.52997 * 109.47164 * 79.99626 * 13 11 10 17 17 C 1.53007 * 109.47216 * 185.00058 * 16 13 11 18 18 C 1.50692 * 109.47118 * 180.02562 * 17 16 13 19 19 H 1.08000 * 120.00401 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00052 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99816 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46680 * 90.00155 * 22 20 18 24 24 H 1.48497 * 109.47081 * 209.99846 * 22 20 18 25 25 H 1.48498 * 109.47394 * 330.00579 * 22 20 18 26 26 C 1.46927 * 118.73985 * 53.85904 * 10 7 6 27 27 H 1.09005 * 109.46989 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47149 * 299.99722 * 1 2 3 29 29 H 1.08999 * 109.47225 * 60.00109 * 1 2 3 30 30 H 1.09004 * 109.47432 * 239.99705 * 2 1 3 31 31 H 1.08999 * 109.47225 * 119.99891 * 2 1 3 32 32 H 1.09000 * 109.46207 * 58.65865 * 5 3 2 33 33 H 1.09009 * 109.44893 * 298.69594 * 5 3 2 34 34 H 1.09001 * 109.49825 * 301.41219 * 6 5 3 35 35 H 1.09001 * 109.52568 * 181.32976 * 6 5 3 36 36 H 1.09000 * 109.46734 * 300.63649 * 9 7 6 37 37 H 1.08997 * 109.47193 * 60.63610 * 9 7 6 38 38 H 1.09004 * 109.47277 * 180.63910 * 9 7 6 39 39 H 1.00898 * 111.00348 * 176.04227 * 15 13 11 40 40 H 1.00903 * 110.99667 * 300.00295 * 15 13 11 41 41 H 1.08996 * 109.47223 * 304.99904 * 16 13 11 42 42 H 1.08998 * 109.47055 * 65.00264 * 16 13 11 43 43 H 1.09000 * 109.46845 * 300.00564 * 17 16 13 44 44 H 1.08998 * 109.46940 * 60.00136 * 17 16 13 45 45 H 0.96999 * 120.00098 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58645 * 65.92691 * 26 10 7 47 47 H 1.09001 * 109.58579 * 186.35848 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6070 1.9819 0.8423 5 6 1.6354 2.1273 -1.3075 6 6 2.1166 3.5800 -1.2946 7 6 3.6445 3.6066 -1.1875 8 1 3.9853 4.6363 -1.0783 9 6 4.2607 2.9933 -2.4465 10 7 4.0498 2.8263 -0.0105 11 6 4.8496 3.3672 0.9300 12 8 5.2421 4.5083 0.8089 13 6 5.2560 2.5541 2.1319 14 1 4.4059 1.9654 2.4767 15 7 5.6961 3.4543 3.2061 16 6 6.4035 1.6172 1.7495 17 6 6.7330 0.7048 2.9327 18 6 7.8636 -0.2176 2.5562 19 1 8.3030 -0.1593 1.5714 20 6 8.3372 -1.1360 3.4690 21 7 7.8018 -1.2074 4.6681 22 14 9.7382 -2.2799 3.0021 23 1 11.0341 -1.6413 3.3461 24 1 9.6030 -3.5577 3.7464 25 1 9.6915 -2.5498 1.5426 26 6 3.5717 1.4430 0.1189 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5503 2.1050 -1.4085 33 1 2.0892 1.6019 -2.1479 34 1 1.6829 4.0994 -0.4401 35 1 1.8079 4.0742 -2.2158 36 1 3.9148 1.9655 -2.5566 37 1 3.9589 3.5736 -3.3185 38 1 5.3474 3.0039 -2.3614 39 1 5.9128 2.9374 4.0450 40 1 6.4839 4.0114 2.9109 41 1 6.1072 1.0101 0.8941 42 1 7.2827 2.2067 1.4895 43 1 7.0292 1.3119 3.7881 44 1 5.8538 0.1152 3.1927 45 1 8.1352 -1.8533 5.3105 46 1 4.0027 0.8318 -0.6739 47 1 3.8642 1.0447 1.0904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614327.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:54 Heat of formation + Delta-G solvation = -69.866274 kcal Electronic energy + Delta-G solvation = -23668.625796 eV Core-core repulsion = 20463.762052 eV Total energy + Delta-G solvation = -3204.863744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44156 -38.05222 -35.61956 -34.71781 -32.98974 -32.61048 -30.19433 -29.87447 -27.94241 -26.56491 -24.55003 -23.80854 -23.60311 -21.27404 -20.55715 -19.68472 -18.33688 -17.47224 -16.34848 -15.79646 -15.35538 -14.97236 -14.70028 -14.54517 -14.43104 -14.20546 -14.05644 -13.38340 -13.20622 -13.15235 -13.02029 -12.60977 -12.29557 -12.25636 -12.14933 -11.90972 -11.71891 -11.38766 -11.21994 -11.08932 -10.99952 -10.90310 -10.80375 -10.67308 -10.40643 -10.34915 -9.97815 -9.83541 -9.26070 -9.12331 -8.47885 -8.43991 -8.15061 -6.08700 -4.11718 2.97159 3.10006 3.26896 3.33667 3.36624 4.39049 4.47838 4.57922 4.69323 4.85588 4.94400 5.03337 5.11974 5.19641 5.23065 5.27706 5.34907 5.38969 5.43371 5.46897 5.53646 5.61055 5.70313 5.73531 5.76025 5.80665 5.84220 5.91603 5.96500 5.97670 6.03955 6.13928 6.25013 6.30043 6.35782 6.53490 6.70997 6.87826 7.44530 7.52053 7.61164 7.69273 7.88417 7.93304 8.31278 8.50156 8.94167 9.53216 11.02208 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.016009 B = 0.004536 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.559644 B = 6171.345331 C = 6897.124560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.102 4.102 4 H 0.075 0.925 5 C -0.116 4.116 6 C -0.127 4.127 7 C 0.136 3.864 8 H 0.096 0.904 9 C -0.161 4.161 10 N -0.609 5.609 11 C 0.529 3.471 12 O -0.542 6.542 13 C 0.074 3.926 14 H 0.096 0.904 15 N -0.831 5.831 16 C -0.138 4.138 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.107 3.893 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.353 0.647 40 H 0.345 0.655 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.261 0.739 46 H 0.070 0.930 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.200 4.621 -11.891 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.121 4.121 4 H 0.093 0.907 5 C -0.153 4.153 6 C -0.165 4.165 7 C 0.033 3.967 8 H 0.114 0.886 9 C -0.219 4.219 10 N -0.343 5.343 11 C 0.317 3.683 12 O -0.418 6.418 13 C -0.041 4.041 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.178 4.178 17 C -0.012 4.012 18 C -0.561 4.561 19 H 0.072 0.928 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 C -0.016 4.016 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.071 0.929 46 H 0.088 0.912 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.694 5.480 -11.824 19.640 hybrid contribution 1.678 -1.376 -0.252 2.184 sum -13.016 4.104 -12.076 18.223 Atomic orbital electron populations 1.21793 0.95826 1.01499 1.01750 1.21520 0.95931 0.95712 1.02650 1.21644 0.95322 0.96519 0.98641 0.90660 1.21655 1.00791 0.95354 0.97515 1.21905 0.95125 0.97292 1.02224 1.21083 0.93818 0.96946 0.84893 0.88584 1.22140 1.01424 1.01452 0.96913 1.48128 1.49881 1.14031 1.22254 1.20876 0.76862 0.86988 0.83540 1.90608 1.54848 1.18660 1.77658 1.21510 0.99652 0.92667 0.90262 0.88607 1.58754 1.44312 1.26902 1.06317 1.22396 0.95839 0.97714 1.01820 1.19092 0.96803 0.93466 0.91812 1.21172 1.17552 1.18072 0.99319 0.92761 1.24999 0.96891 0.97354 0.94974 1.69948 1.41824 1.36238 1.05187 0.86599 0.82600 0.80306 0.78554 1.20622 1.21145 1.19890 1.21986 0.93429 0.82553 1.03611 0.92824 0.92772 0.92697 0.91767 0.91271 0.91630 0.91556 0.91616 0.91052 0.92069 0.91809 0.92279 0.83147 0.84187 0.92485 0.92744 0.96433 0.96384 0.92892 0.91199 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.84 16 2 C -0.12 -1.08 5.41 -26.73 -0.14 -1.23 16 3 C -0.10 -1.02 2.35 -90.27 -0.21 -1.23 16 4 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 5 C -0.12 -1.02 4.75 -26.69 -0.13 -1.14 16 6 C -0.13 -1.24 5.56 -26.61 -0.15 -1.39 16 7 C 0.14 1.66 3.20 -67.60 -0.22 1.44 16 8 H 0.10 1.36 7.01 -51.93 -0.36 0.99 16 9 C -0.16 -1.71 9.03 37.16 0.34 -1.37 16 10 N -0.61 -8.57 2.67 -164.95 -0.44 -9.01 16 11 C 0.53 9.24 6.95 -10.98 -0.08 9.16 16 12 O -0.54 -11.01 15.66 5.56 0.09 -10.92 16 13 C 0.07 1.30 2.35 -68.87 -0.16 1.14 16 14 H 0.10 1.61 6.55 -51.93 -0.34 1.27 16 15 N -0.83 -14.82 8.94 -5.66 -0.05 -14.87 16 16 C -0.14 -2.75 4.54 -26.73 -0.12 -2.87 16 17 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 18 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 22 Si 0.89 21.22 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.11 1.31 4.48 -3.48 -0.02 1.29 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.40 6.54 -51.93 -0.34 0.06 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.51 6.51 -51.93 -0.34 0.18 16 33 H 0.07 0.56 6.50 -51.92 -0.34 0.22 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 5.73 -51.93 -0.30 0.31 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.35 6.26 7.55 -39.29 -0.30 5.96 16 40 H 0.34 6.24 8.58 -39.29 -0.34 5.91 16 41 H 0.06 1.10 7.18 -51.93 -0.37 0.72 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 47 H 0.09 1.26 5.17 -51.93 -0.27 0.99 16 LS Contribution 356.29 15.07 5.37 5.37 Total: -1.00 -30.52 356.29 -8.62 -39.14 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -8.23 Total: 8.88 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.07 Total: -9.60 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.24 Total: -49.06 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.52 -8.62 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614327.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.728 kcal (2) G-P(sol) polarization free energy of solvation -30.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds