Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47379 * 2 1 4 4 H 1.09002 * 109.46800 * 304.99909 * 3 2 1 5 5 C 1.52998 * 109.47153 * 64.99656 * 3 2 1 6 6 C 1.52998 * 109.47417 * 184.99632 * 3 2 1 7 7 H 1.09005 * 109.47193 * 58.55771 * 6 3 2 8 8 C 1.52988 * 109.47268 * 298.55384 * 6 3 2 9 9 N 1.46907 * 109.47187 * 178.55212 * 6 3 2 10 10 C 1.46898 * 110.99964 * 292.64067 * 9 6 3 11 11 C 1.50705 * 109.47066 * 164.15499 * 10 9 6 12 12 O 1.21280 * 119.99717 * 0.58188 * 11 10 9 13 13 N 1.34778 * 119.99836 * 180.58811 * 11 10 9 14 14 C 1.46496 * 119.99997 * 179.97438 * 13 11 10 15 15 C 1.50689 * 109.47439 * 179.97438 * 14 13 11 16 16 H 1.07999 * 120.00348 * 359.97438 * 15 14 13 17 17 C 1.37883 * 120.00386 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99420 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00131 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47232 * 90.00212 * 19 17 15 21 21 H 1.48505 * 109.47132 * 210.00223 * 19 17 15 22 22 H 1.48497 * 109.47262 * 330.00271 * 19 17 15 23 23 C 1.46895 * 110.99764 * 168.68459 * 9 6 3 24 24 C 1.52999 * 117.49796 * 130.16594 * 23 9 6 25 25 C 1.52999 * 117.50223 * 61.50323 * 23 9 6 26 26 H 1.08993 * 109.47279 * 300.00076 * 1 2 3 27 27 H 1.09008 * 109.46908 * 60.00480 * 1 2 3 28 28 H 1.09007 * 109.47037 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47282 * 239.99482 * 2 1 3 30 30 H 1.09001 * 109.47252 * 119.99686 * 2 1 3 31 31 H 1.09002 * 109.46947 * 293.73647 * 5 3 2 32 32 H 1.08999 * 109.47397 * 53.73718 * 5 3 2 33 33 H 1.08997 * 109.47155 * 173.74027 * 5 3 2 34 34 H 1.08998 * 109.47594 * 295.47326 * 8 6 3 35 35 H 1.09005 * 109.47486 * 55.47318 * 8 6 3 36 36 H 1.09005 * 109.47489 * 175.47433 * 8 6 3 37 37 H 1.09004 * 109.46931 * 284.14630 * 10 9 6 38 38 H 1.08999 * 109.47207 * 44.14816 * 10 9 6 39 39 H 0.97002 * 119.99710 * 359.97438 * 13 11 10 40 40 H 1.09003 * 109.46963 * 300.00339 * 14 13 11 41 41 H 1.09007 * 109.46945 * 59.99485 * 14 13 11 42 42 H 0.97002 * 119.99306 * 179.97438 * 18 17 15 43 43 H 1.09003 * 115.55071 * 275.82768 * 23 9 6 44 44 H 1.09003 * 117.50010 * 359.97438 * 24 23 9 45 45 H 1.08997 * 117.50153 * 145.01777 * 24 23 9 46 46 H 1.08997 * 117.49884 * 214.97440 * 25 23 9 47 47 H 1.08998 * 117.49625 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 1.6352 2.1265 1.3073 6 6 3.5648 1.4443 -0.1256 7 1 3.8543 0.9343 -1.0445 8 6 4.1763 0.7190 1.0746 9 7 4.0516 2.8299 -0.1605 10 6 3.6259 3.5066 -1.3929 11 6 3.7933 4.9956 -1.2319 12 8 4.2347 5.4477 -0.1967 13 7 3.4524 5.8247 -2.2383 14 6 3.6146 7.2722 -2.0816 15 6 3.1651 7.9673 -3.3408 16 1 2.7959 7.3888 -4.1746 17 6 3.2251 9.3421 -3.4284 18 7 3.6751 10.0466 -2.4132 19 14 2.6685 10.2036 -4.9896 20 1 1.2212 10.5214 -4.8906 21 1 3.4404 11.4603 -5.1636 22 1 2.9013 9.3142 -6.1557 23 6 5.5121 2.8786 -0.0106 24 6 6.2989 3.7115 -1.0246 25 6 6.3557 2.1828 -1.0807 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.5503 2.2249 1.3451 32 1 1.9753 1.5269 2.1516 33 1 2.0916 3.1151 1.3565 34 1 3.9542 1.2737 1.9862 35 1 3.7540 -0.2834 1.1473 36 1 5.2565 0.6496 0.9456 37 1 4.2366 3.1605 -2.2269 38 1 2.5786 3.2778 -1.5898 39 1 3.0997 5.4630 -3.0663 40 1 3.0119 7.6165 -1.2411 41 1 4.6636 7.5022 -1.8947 42 1 3.7176 11.0137 -2.4750 43 1 5.8805 2.8547 1.0149 44 1 5.7328 4.2229 -1.8032 45 1 7.1851 4.2352 -0.6663 46 1 7.2793 1.7015 -0.7592 47 1 5.8270 1.6885 -1.8957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729544850.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -14.250664 kcal Electronic energy + Delta-G solvation = -23424.760716 eV Core-core repulsion = 20222.308645 eV Total energy + Delta-G solvation = -3202.452070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.20651 -38.08210 -36.70475 -34.05241 -33.19242 -32.27573 -30.81491 -28.89757 -27.68612 -25.78390 -25.23986 -23.01054 -22.45504 -22.04237 -20.25785 -19.53351 -18.49898 -17.07264 -16.95027 -15.89183 -15.56565 -15.34415 -14.83271 -14.77889 -14.36359 -14.15661 -13.71289 -13.69575 -12.87697 -12.67101 -12.45771 -12.26196 -12.19763 -12.05654 -11.96876 -11.82271 -11.72085 -11.46962 -11.27384 -11.07935 -10.94991 -10.85408 -10.71586 -10.59566 -10.36502 -10.32772 -10.26894 -9.94061 -9.36538 -8.91884 -8.69785 -8.05469 -7.78900 -6.14414 -4.21005 3.25170 3.31200 3.33481 3.46300 3.63474 3.97630 4.25918 4.43137 4.67649 4.75165 4.91498 4.96415 5.00998 5.08294 5.13360 5.21626 5.27458 5.35230 5.40576 5.45449 5.51991 5.56785 5.61456 5.67754 5.70037 5.79381 5.82822 5.94176 5.97363 6.03216 6.06960 6.11224 6.19041 6.24280 6.28146 6.38511 6.58752 7.05096 7.20301 7.37349 7.52154 7.56858 7.71957 8.00673 8.69948 8.83933 9.21593 9.46192 10.95779 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.003889 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.421605 B = 7197.385612 C = 8017.902224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.142 4.142 6 C 0.090 3.910 7 H 0.038 0.962 8 C -0.147 4.147 9 N -0.479 5.479 10 C 0.024 3.976 11 C 0.500 3.500 12 O -0.530 6.530 13 N -0.720 5.720 14 C 0.253 3.747 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.048 3.952 24 C -0.171 4.171 25 C -0.227 4.227 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.387 0.613 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -21.300 3.394 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.199 4.199 6 C -0.018 4.018 7 H 0.056 0.944 8 C -0.204 4.204 9 N -0.202 5.202 10 C -0.107 4.107 11 C 0.284 3.716 12 O -0.406 6.406 13 N -0.370 5.370 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.080 0.920 17 C -0.140 4.140 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.061 4.061 24 C -0.208 4.208 25 C -0.266 4.266 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.219 0.781 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.140 0.860 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.035 -20.492 4.629 21.034 hybrid contribution -0.084 0.052 -2.077 2.079 sum -1.119 -20.440 2.553 20.630 Atomic orbital electron populations 1.21804 0.95876 1.01220 1.02118 1.21618 0.95898 0.96372 1.01758 1.21230 0.93904 0.95796 0.99561 0.91317 1.21805 1.00173 1.02037 0.95912 1.21629 0.94635 0.87689 0.97824 0.94363 1.21932 1.00510 0.99575 0.98430 1.61682 1.09091 1.14305 1.35077 1.22189 1.02154 0.94146 0.92250 1.20154 0.79165 0.87722 0.84556 1.90668 1.44612 1.77553 1.27777 1.46460 1.64494 1.09679 1.16355 1.19036 0.97304 0.73175 0.97216 1.21237 1.44672 0.91996 1.00171 0.92002 1.24949 0.94960 0.97281 0.96814 1.69981 1.45068 1.06767 1.30464 0.86436 0.78689 0.79053 0.82847 1.20471 1.21024 1.19787 1.22544 0.85153 1.02919 0.95528 1.23281 1.02696 0.92537 1.02295 1.23486 1.03288 0.96113 1.03760 0.92347 0.92835 0.93118 0.92431 0.91713 0.93507 0.93069 0.90696 0.91380 0.92207 0.92545 0.92357 0.88434 0.78077 0.95669 0.95724 0.92494 0.86047 0.88396 0.88468 0.88882 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.12 -1.00 4.94 -26.74 -0.13 -1.13 16 3 C -0.09 -0.89 2.09 -90.62 -0.19 -1.08 16 4 H 0.07 0.76 6.28 -51.93 -0.33 0.43 16 5 C -0.14 -1.61 8.14 37.16 0.30 -1.31 16 6 C 0.09 0.98 1.58 -67.72 -0.11 0.87 16 7 H 0.04 0.41 7.61 -51.93 -0.39 0.02 16 8 C -0.15 -1.42 7.96 37.15 0.30 -1.12 16 9 N -0.48 -6.66 3.43 -220.15 -0.75 -7.41 16 10 C 0.02 0.35 4.85 -4.97 -0.02 0.33 16 11 C 0.50 9.93 5.64 -10.98 -0.06 9.87 16 12 O -0.53 -12.61 14.96 5.56 0.08 -12.53 16 13 N -0.72 -15.16 5.55 -61.48 -0.34 -15.50 16 14 C 0.25 6.75 5.43 -5.20 -0.03 6.72 16 15 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 16 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.24 13.29 55.43 0.74 -25.51 16 19 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C 0.05 0.66 3.93 -67.72 -0.27 0.39 16 24 C -0.17 -2.56 8.32 -26.69 -0.22 -2.79 16 25 C -0.23 -2.69 9.21 -26.69 -0.25 -2.93 16 26 H 0.06 0.48 6.71 -51.93 -0.35 0.13 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.52 6.63 -51.93 -0.34 0.17 16 31 H 0.05 0.50 6.88 -51.93 -0.36 0.14 16 32 H 0.05 0.53 6.87 -51.93 -0.36 0.17 16 33 H 0.07 1.07 7.46 -51.93 -0.39 0.69 16 34 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 35 H 0.06 0.49 6.35 -51.93 -0.33 0.16 16 36 H 0.06 0.54 6.89 -51.93 -0.36 0.18 16 37 H 0.06 0.79 6.09 -51.93 -0.32 0.47 16 38 H 0.10 1.29 5.99 -51.93 -0.31 0.97 16 39 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.02 0.73 8.14 -51.92 -0.42 0.30 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 1.66 8.02 -51.93 -0.42 1.24 16 44 H 0.10 1.66 4.79 -51.93 -0.25 1.41 16 45 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 0.99 7.29 -51.93 -0.38 0.61 16 LS Contribution 356.48 15.07 5.37 5.37 Total: -1.00 -31.05 356.48 -8.72 -39.77 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -8.06 Total: 6.36 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.74 Total: -6.48 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.36 Total: -48.42 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.08 Total: -12.53 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.05 -8.72 -39.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729544850.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.521 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds