Wall clock time and date at job start Tue Mar 31 2020 05:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47096 * 2 1 4 4 H 1.09003 * 109.47360 * 54.99792 * 3 2 1 5 5 C 1.53001 * 109.47443 * 294.99803 * 3 2 1 6 6 C 1.53004 * 109.47290 * 174.99787 * 3 2 1 7 7 H 1.08998 * 109.46658 * 304.99955 * 6 3 2 8 8 C 1.52997 * 109.46757 * 65.00115 * 6 3 2 9 9 N 1.46901 * 109.47464 * 184.99854 * 6 3 2 10 10 C 1.46896 * 111.00135 * 180.02562 * 9 6 3 11 11 C 1.50705 * 109.47142 * 162.52736 * 10 9 6 12 12 O 1.21283 * 119.99576 * 1.00315 * 11 10 9 13 13 N 1.34771 * 119.99774 * 181.01077 * 11 10 9 14 14 C 1.46504 * 119.99613 * 179.97438 * 13 11 10 15 15 C 1.50697 * 109.46974 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00102 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00025 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99949 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47449 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47229 * 119.99683 * 19 17 15 22 22 H 1.48503 * 109.47002 * 239.99981 * 19 17 15 23 23 C 1.46906 * 110.99578 * 56.04413 * 9 6 3 24 24 C 1.53006 * 117.49348 * 127.78601 * 23 9 6 25 25 C 1.52999 * 117.49617 * 59.16836 * 23 9 6 26 26 H 1.09006 * 109.46969 * 300.00120 * 1 2 3 27 27 H 1.09002 * 109.46721 * 59.99771 * 1 2 3 28 28 H 1.08991 * 109.46809 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47358 * 239.99823 * 2 1 3 30 30 H 1.08997 * 109.46988 * 119.99546 * 2 1 3 31 31 H 1.09003 * 109.46833 * 300.00311 * 5 3 2 32 32 H 1.08992 * 109.47274 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.46922 * 59.99875 * 5 3 2 34 34 H 1.09004 * 109.47230 * 299.99748 * 8 6 3 35 35 H 1.08993 * 109.47546 * 59.99989 * 8 6 3 36 36 H 1.09004 * 109.47282 * 180.02562 * 8 6 3 37 37 H 1.09000 * 109.47182 * 282.52220 * 10 9 6 38 38 H 1.08997 * 109.46840 * 42.52641 * 10 9 6 39 39 H 0.96995 * 120.00086 * 359.97438 * 13 11 10 40 40 H 1.08995 * 109.47075 * 299.99364 * 14 13 11 41 41 H 1.09004 * 109.47120 * 59.99549 * 14 13 11 42 42 H 0.96999 * 119.99449 * 180.02562 * 18 17 15 43 43 H 1.08997 * 115.55435 * 273.49211 * 23 9 6 44 44 H 1.09000 * 117.49961 * 0.02562 * 24 23 9 45 45 H 1.09001 * 117.49754 * 145.02188 * 24 23 9 46 46 H 1.09000 * 117.49667 * 214.97454 * 25 23 9 47 47 H 1.09002 * 117.50118 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.8570 0.8801 1.0114 8 6 4.1798 0.7976 -1.1170 9 7 4.0447 2.8276 0.2461 10 6 5.5080 2.8685 0.3685 11 6 5.9990 4.2598 0.0615 12 8 5.2064 5.1359 -0.2127 13 7 7.3189 4.5304 0.0915 14 6 7.7963 5.8828 -0.2075 15 6 9.2994 5.9189 -0.1054 16 1 9.8446 5.0239 0.1556 17 6 9.9786 7.0946 -0.3453 18 7 9.3147 8.1846 -0.6627 19 14 11.8419 7.1392 -0.2195 20 1 12.3455 5.7919 0.1501 21 1 12.4169 7.5411 -1.5283 22 1 12.2445 8.1200 0.8203 23 6 3.4020 3.5111 1.3766 24 6 4.3121 4.2001 2.3954 25 6 3.5896 2.9041 2.7684 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0700 1.5875 -2.1492 32 1 1.9983 3.1543 -1.3071 33 1 0.5490 2.1252 -1.3969 34 1 3.8239 -0.2288 -1.2063 35 1 3.8876 1.3619 -2.0025 36 1 5.2662 0.7985 -1.0272 37 1 5.7953 2.5978 1.3845 38 1 5.9511 2.1633 -0.3346 39 1 7.9528 3.8298 0.3111 40 1 7.4937 6.1600 -1.2172 41 1 7.3670 6.5858 0.5064 42 1 9.7926 9.0115 -0.8317 43 1 2.4436 3.9821 1.1579 44 1 5.3877 4.1465 2.2266 45 1 3.9526 5.1247 2.8471 46 1 2.7548 2.9760 3.4655 47 1 4.1896 1.9973 2.8452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729544972.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:28 Heat of formation + Delta-G solvation = -13.033366 kcal Electronic energy + Delta-G solvation = -23321.302908 eV Core-core repulsion = 20118.903624 eV Total energy + Delta-G solvation = -3202.399284 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19282 -38.12410 -36.56664 -34.05529 -33.58360 -32.26415 -30.50227 -28.53398 -28.09066 -26.36244 -24.95469 -22.71834 -22.49385 -21.84814 -20.72317 -19.43212 -18.42528 -17.15743 -16.96799 -15.84445 -15.66926 -15.32106 -14.90596 -14.58236 -14.33267 -14.18979 -13.90129 -13.53406 -13.05765 -12.65559 -12.61017 -12.33775 -12.29995 -12.02125 -11.94147 -11.86928 -11.67634 -11.37541 -11.30755 -10.99552 -10.92940 -10.86401 -10.71822 -10.57774 -10.40236 -10.34286 -10.28094 -9.94944 -9.34663 -8.92474 -8.70257 -8.06325 -7.78442 -6.14504 -4.21009 3.24273 3.31270 3.34226 3.47725 3.63436 3.95030 4.27738 4.46300 4.60264 4.73743 4.91374 4.94871 5.00115 5.06263 5.10341 5.21559 5.25847 5.31867 5.38660 5.46820 5.50241 5.56295 5.58713 5.66032 5.67830 5.77134 5.82346 5.90125 5.95097 6.01028 6.05043 6.08524 6.16318 6.21638 6.27696 6.38685 6.52729 7.04809 7.19971 7.37908 7.52830 7.57183 7.72384 8.00748 8.70695 8.84396 9.22594 9.46350 10.95731 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.003334 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.303361 B = 8395.814440 C = 8608.356704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.081 4.081 4 H 0.072 0.928 5 C -0.144 4.144 6 C 0.089 3.911 7 H 0.039 0.961 8 C -0.154 4.154 9 N -0.479 5.479 10 C 0.021 3.979 11 C 0.500 3.500 12 O -0.530 6.530 13 N -0.720 5.720 14 C 0.253 3.747 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.047 3.953 24 C -0.174 4.174 25 C -0.224 4.224 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.387 0.613 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.093 0.907 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 -17.339 3.484 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.100 4.100 4 H 0.091 0.909 5 C -0.201 4.201 6 C -0.019 4.019 7 H 0.057 0.943 8 C -0.212 4.212 9 N -0.202 5.202 10 C -0.110 4.110 11 C 0.284 3.716 12 O -0.406 6.406 13 N -0.370 5.370 14 C 0.132 3.868 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.062 4.062 24 C -0.211 4.211 25 C -0.264 4.264 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.219 0.781 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.115 0.885 46 H 0.111 0.889 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.518 -16.228 2.771 21.950 hybrid contribution 1.703 -0.584 0.992 2.056 sum -12.815 -16.811 3.762 21.471 Atomic orbital electron populations 1.21804 0.95962 1.01199 1.01973 1.21604 0.95821 0.96540 1.01745 1.21131 0.93661 0.95725 0.99458 0.90935 1.21857 0.99895 1.02016 0.96357 1.21653 0.95103 0.87802 0.97298 0.94311 1.22073 1.00386 1.00144 0.98554 1.61667 1.03644 1.14696 1.40158 1.22242 0.89729 0.97479 1.01535 1.20185 0.83154 0.89538 0.78755 1.90661 1.54710 1.47509 1.47736 1.46452 1.05861 1.15006 1.69691 1.19039 0.93784 0.77293 0.96637 1.21274 0.91148 0.96341 1.49193 0.91954 1.24954 0.99009 0.95310 0.94792 1.69991 1.35777 1.00480 1.46037 0.86383 0.84710 0.78145 0.77797 1.19671 1.20805 1.20833 1.22568 0.99697 1.00528 0.83449 1.23266 0.99298 0.96068 1.02498 1.23449 1.04175 0.97550 1.01204 0.92928 0.92371 0.93139 0.91821 0.92429 0.92758 0.91124 0.93495 0.92064 0.90982 0.92637 0.92266 0.88169 0.78083 0.95680 0.95732 0.92551 0.86064 0.88400 0.88454 0.88851 0.89474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -0.96 5.03 -26.73 -0.13 -1.10 16 3 C -0.08 -0.79 1.98 -90.62 -0.18 -0.97 16 4 H 0.07 0.75 6.75 -51.93 -0.35 0.40 16 5 C -0.14 -1.52 8.35 37.16 0.31 -1.21 16 6 C 0.09 0.97 1.59 -67.71 -0.11 0.86 16 7 H 0.04 0.41 7.22 -51.93 -0.37 0.04 16 8 C -0.15 -1.56 8.29 37.16 0.31 -1.26 16 9 N -0.48 -6.67 3.66 -220.14 -0.81 -7.48 16 10 C 0.02 0.31 4.86 -4.98 -0.02 0.29 16 11 C 0.50 9.97 5.86 -10.99 -0.06 9.91 16 12 O -0.53 -12.71 15.21 5.55 0.08 -12.62 16 13 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 14 C 0.25 6.76 5.43 -5.19 -0.03 6.73 16 15 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 19 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C 0.05 0.64 4.08 -67.71 -0.28 0.36 16 24 C -0.17 -2.57 8.47 -26.73 -0.23 -2.79 16 25 C -0.22 -2.62 9.38 -26.73 -0.25 -2.87 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 6.81 -51.93 -0.35 0.15 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.55 6.35 -51.93 -0.33 0.22 16 32 H 0.07 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.06 0.51 6.68 -51.93 -0.35 0.16 16 35 H 0.07 0.81 6.34 -51.93 -0.33 0.48 16 36 H 0.05 0.56 6.08 -51.93 -0.32 0.25 16 37 H 0.06 0.80 6.00 -51.93 -0.31 0.48 16 38 H 0.10 1.30 5.58 -51.93 -0.29 1.01 16 39 H 0.39 7.03 8.32 -40.82 -0.34 6.69 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.12 1.67 7.90 -51.93 -0.41 1.26 16 44 H 0.10 1.61 4.91 -51.93 -0.25 1.36 16 45 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 0.98 7.19 -51.93 -0.37 0.60 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -31.27 356.20 -8.67 -39.94 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -7.96 Total: 6.17 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.73 Total: -6.24 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.41 Total: -48.56 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.27 -8.67 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729544972.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.908 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds