Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 H 1.09005 * 109.47065 * 304.99286 * 3 2 1 5 5 C 1.52993 * 109.47505 * 64.99717 * 3 2 1 6 6 C 1.53007 * 109.47221 * 185.00024 * 3 2 1 7 7 H 1.09003 * 109.46765 * 300.00070 * 6 3 2 8 8 C 1.53003 * 109.47157 * 59.99437 * 6 3 2 9 9 N 1.46901 * 109.47107 * 179.97438 * 6 3 2 10 10 C 1.46900 * 110.99682 * 174.99802 * 9 6 3 11 11 C 1.50698 * 109.47260 * 284.03834 * 10 9 6 12 12 O 1.21286 * 119.99691 * 4.27918 * 11 10 9 13 13 N 1.34775 * 120.00213 * 184.28322 * 11 10 9 14 14 C 1.46497 * 120.00135 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47133 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00348 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00035 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00145 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47397 * 89.99304 * 19 17 15 21 21 H 1.48500 * 109.47128 * 209.99859 * 19 17 15 22 22 H 1.48505 * 109.46808 * 329.99604 * 19 17 15 23 23 C 1.46900 * 110.99878 * 298.95059 * 9 6 3 24 24 C 1.52997 * 117.49883 * 247.47038 * 23 9 6 25 25 C 1.52998 * 117.49507 * 178.81281 * 23 9 6 26 26 H 1.08996 * 109.46451 * 60.00756 * 1 2 3 27 27 H 1.09002 * 109.46880 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46929 * 300.00380 * 1 2 3 29 29 H 1.08999 * 109.47369 * 239.99315 * 2 1 3 30 30 H 1.09001 * 109.46975 * 119.99718 * 2 1 3 31 31 H 1.09001 * 109.47376 * 60.00224 * 5 3 2 32 32 H 1.09002 * 109.47156 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47412 * 299.99849 * 5 3 2 34 34 H 1.08996 * 109.46957 * 180.02562 * 8 6 3 35 35 H 1.09001 * 109.47228 * 300.00558 * 8 6 3 36 36 H 1.08999 * 109.46831 * 60.00129 * 8 6 3 37 37 H 1.09008 * 109.47077 * 44.03477 * 10 9 6 38 38 H 1.08999 * 109.47004 * 164.03556 * 10 9 6 39 39 H 0.96998 * 120.00002 * 359.97438 * 13 11 10 40 40 H 1.08993 * 109.47787 * 300.00650 * 14 13 11 41 41 H 1.09003 * 109.46555 * 60.00724 * 14 13 11 42 42 H 0.97002 * 119.99852 * 180.02562 * 18 17 15 43 43 H 1.08999 * 115.55115 * 33.13988 * 23 9 6 44 44 H 1.08999 * 117.49640 * 0.02562 * 24 23 9 45 45 H 1.09001 * 117.50125 * 145.02463 * 24 23 9 46 46 H 1.09004 * 117.49471 * 214.97904 * 25 23 9 47 47 H 1.08998 * 117.50011 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5649 1.4444 -0.1257 7 1 3.9995 0.9053 0.7161 8 6 3.9697 0.7602 -1.4330 9 7 4.0545 2.8294 -0.1263 10 6 5.5230 2.8686 -0.1263 11 6 6.0343 2.5381 1.2522 12 8 5.2571 2.2182 2.1267 13 7 7.3552 2.5981 1.5133 14 6 7.8522 2.2773 2.8536 15 6 9.3522 2.4193 2.8804 16 1 9.8824 2.7190 1.9884 17 6 10.0479 2.1667 4.0437 18 7 11.3570 2.2911 4.0672 19 14 9.1313 1.6478 5.5863 20 1 9.0225 0.1673 5.6231 21 1 9.8712 2.1197 6.7842 22 1 7.7711 2.2439 5.5779 23 6 3.5078 3.5805 -1.2643 24 6 4.4852 4.0179 -2.3571 25 6 3.9011 5.0534 -1.3929 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5877 2.1491 32 1 1.9982 3.1544 1.3070 33 1 0.5490 2.1254 1.3968 34 1 5.0560 0.7611 -1.5224 35 1 3.6063 -0.2675 -1.4330 36 1 3.5351 1.2992 -2.2749 37 1 5.9059 2.1394 -0.8404 38 1 5.8598 3.8658 -0.4094 39 1 7.9767 2.8536 0.8139 40 1 7.4092 2.9601 3.5785 41 1 7.5801 1.2525 3.1063 42 1 11.8464 2.1131 4.8855 43 1 2.5008 3.2996 -1.5728 44 1 5.5338 3.7480 -2.2318 45 1 4.1211 4.0252 -3.3845 46 1 3.1529 5.7416 -1.7864 47 1 4.5652 5.4652 -0.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729544973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -13.645689 kcal Electronic energy + Delta-G solvation = -23414.945568 eV Core-core repulsion = 20212.519731 eV Total energy + Delta-G solvation = -3202.425837 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.18294 -38.24191 -36.70440 -34.28264 -33.55325 -32.33443 -30.39658 -29.20683 -28.32321 -26.32919 -24.40709 -22.61514 -22.45150 -22.20562 -20.82904 -19.80873 -18.75395 -17.36464 -16.59919 -16.08727 -15.83552 -15.06727 -14.74734 -14.69382 -14.36829 -14.01019 -13.92224 -13.60183 -13.18291 -13.01711 -12.65801 -12.46502 -12.42635 -12.21386 -12.03312 -11.81370 -11.62732 -11.56237 -11.50999 -11.19561 -10.99241 -10.91918 -10.74357 -10.52002 -10.42323 -10.32838 -10.17079 -9.95492 -9.48172 -9.07374 -8.76279 -8.11151 -7.98967 -6.20660 -4.22651 3.26801 3.30292 3.34156 3.43402 3.46788 3.82483 4.28550 4.34831 4.58293 4.74495 4.85210 4.90879 4.93760 4.98320 5.13764 5.15678 5.24203 5.31171 5.36753 5.38395 5.50865 5.51528 5.56952 5.60320 5.69197 5.72909 5.83678 5.87103 5.95802 5.96799 6.03594 6.06360 6.08511 6.20495 6.24378 6.47424 6.65864 6.81486 7.03557 7.10327 7.17284 7.28250 7.42504 8.17160 8.55674 8.77335 9.01658 9.40029 10.91347 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.004183 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.146560 B = 6691.587712 C = 7591.319135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.077 4.077 4 H 0.064 0.936 5 C -0.136 4.136 6 C 0.085 3.915 7 H 0.098 0.902 8 C -0.188 4.188 9 N -0.475 5.475 10 C 0.025 3.975 11 C 0.501 3.499 12 O -0.538 6.538 13 N -0.710 5.710 14 C 0.223 3.777 15 C -0.543 4.543 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.893 5.893 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.260 1.260 23 C 0.027 3.973 24 C -0.225 4.225 25 C -0.175 4.175 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.099 0.901 39 H 0.394 0.606 40 H 0.024 0.976 41 H 0.019 0.981 42 H 0.267 0.733 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.711 -0.297 -13.697 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.096 4.096 4 H 0.082 0.918 5 C -0.194 4.194 6 C -0.023 4.023 7 H 0.116 0.884 8 C -0.247 4.247 9 N -0.195 5.195 10 C -0.106 4.106 11 C 0.285 3.715 12 O -0.415 6.415 13 N -0.360 5.360 14 C 0.101 3.899 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.126 4.126 18 N -0.531 5.531 19 Si 0.703 3.297 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.082 4.082 24 C -0.264 4.264 25 C -0.213 4.213 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.227 0.773 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.139 0.861 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.114 0.886 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.253 -0.332 -12.450 22.930 hybrid contribution 0.484 -0.455 -0.317 0.736 sum -18.769 -0.786 -12.768 22.714 Atomic orbital electron populations 1.21798 0.96047 1.01208 1.01774 1.21659 0.95698 0.96642 1.02124 1.21157 0.93763 0.95715 0.98982 0.91758 1.21709 0.99173 1.01933 0.96537 1.21861 0.95358 0.87493 0.97554 0.88388 1.22576 1.01599 1.01613 0.98883 1.61646 1.05819 1.13344 1.38714 1.22192 0.89372 1.03097 0.95972 1.20371 0.82897 0.78563 0.89706 1.90636 1.55771 1.47653 1.47451 1.46162 1.06262 1.68328 1.15213 1.19439 0.95010 0.95640 0.79809 1.21107 0.89163 1.48623 0.99181 0.90321 1.24799 0.94758 0.94325 0.98764 1.69884 1.06358 1.48408 1.28418 0.86814 0.80711 0.79577 0.82570 1.19895 1.20920 1.18463 1.22687 0.98261 0.95583 0.91694 1.23624 1.00319 1.06203 0.96251 1.23101 1.03853 0.92275 1.02025 0.93102 0.93120 0.92395 0.91962 0.91803 0.92584 0.91452 0.93881 0.92612 0.91793 0.92426 0.91330 0.88254 0.77279 0.95774 0.96350 0.92289 0.86061 0.88370 0.89068 0.88626 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -1.20 5.19 -26.73 -0.14 -1.34 16 3 C -0.08 -0.84 1.75 -90.62 -0.16 -1.00 16 4 H 0.06 0.64 6.15 -51.93 -0.32 0.32 16 5 C -0.14 -1.69 8.79 37.15 0.33 -1.36 16 6 C 0.09 1.07 1.66 -67.71 -0.11 0.96 16 7 H 0.10 1.56 6.60 -51.93 -0.34 1.22 16 8 C -0.19 -1.98 8.34 37.16 0.31 -1.67 16 9 N -0.47 -6.21 3.54 -220.14 -0.78 -6.99 16 10 C 0.02 0.34 4.00 -4.98 -0.02 0.32 16 11 C 0.50 9.45 7.62 -10.99 -0.08 9.36 16 12 O -0.54 -12.01 14.99 5.55 0.08 -11.93 16 13 N -0.71 -14.34 5.55 -61.48 -0.34 -14.68 16 14 C 0.22 5.52 4.50 -5.20 -0.02 5.49 16 15 C -0.54 -14.95 9.83 -34.44 -0.34 -15.28 16 16 H 0.08 2.25 7.84 -52.48 -0.41 1.84 16 17 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 18 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 19 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 23 C 0.03 0.28 4.38 -67.71 -0.30 -0.01 16 24 C -0.22 -2.08 9.55 -26.70 -0.26 -2.33 16 25 C -0.17 -1.73 9.90 -26.70 -0.26 -1.99 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 29 H 0.06 0.56 6.17 -51.93 -0.32 0.24 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.93 7.60 -51.93 -0.39 0.54 16 33 H 0.04 0.46 6.57 -51.93 -0.34 0.12 16 34 H 0.05 0.62 6.24 -51.93 -0.32 0.29 16 35 H 0.06 0.62 6.32 -51.93 -0.33 0.29 16 36 H 0.06 0.55 7.15 -51.93 -0.37 0.18 16 37 H 0.07 0.85 5.71 -51.92 -0.30 0.56 16 38 H 0.10 1.24 5.53 -51.93 -0.29 0.95 16 39 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 40 H 0.02 0.64 7.20 -51.93 -0.37 0.26 16 41 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 42 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 43 H 0.12 1.16 6.03 -51.93 -0.31 0.85 16 44 H 0.10 0.94 6.05 -51.93 -0.31 0.62 16 45 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.08 7.43 -51.93 -0.39 0.70 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -30.99 355.13 -8.27 -39.26 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -7.90 Total: 5.58 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -0.79 Total: -7.69 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.35 Total: -47.52 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.99 -8.27 -39.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729544973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.614 kcal (2) G-P(sol) polarization free energy of solvation -30.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds