Wall clock time and date at job start Tue Mar 31 2020 05:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47056 * 2 1 4 4 H 1.09005 * 109.47065 * 304.99286 * 3 2 1 5 5 C 1.52993 * 109.47505 * 64.99717 * 3 2 1 6 6 C 1.53007 * 109.47221 * 185.00024 * 3 2 1 7 7 H 1.09003 * 109.46765 * 300.00070 * 6 3 2 8 8 C 1.53003 * 109.47157 * 59.99437 * 6 3 2 9 9 N 1.46901 * 109.47107 * 179.97438 * 6 3 2 10 10 C 1.46900 * 110.99682 * 174.99802 * 9 6 3 11 11 C 1.50698 * 109.47260 * 284.03834 * 10 9 6 12 12 O 1.21286 * 119.99691 * 4.27918 * 11 10 9 13 13 N 1.34775 * 120.00213 * 184.28322 * 11 10 9 14 14 C 1.46497 * 120.00135 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.47133 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00348 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00037 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00035 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00145 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47397 * 89.99304 * 19 17 15 21 21 H 1.48500 * 109.47128 * 209.99859 * 19 17 15 22 22 H 1.48505 * 109.46808 * 329.99604 * 19 17 15 23 23 C 1.46900 * 110.99878 * 298.95059 * 9 6 3 24 24 C 1.52997 * 117.49883 * 247.47038 * 23 9 6 25 25 C 1.52998 * 117.49507 * 178.81281 * 23 9 6 26 26 H 1.08996 * 109.46451 * 60.00756 * 1 2 3 27 27 H 1.09002 * 109.46880 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46929 * 300.00380 * 1 2 3 29 29 H 1.08999 * 109.47369 * 239.99315 * 2 1 3 30 30 H 1.09001 * 109.46975 * 119.99718 * 2 1 3 31 31 H 1.09001 * 109.47376 * 60.00224 * 5 3 2 32 32 H 1.09002 * 109.47156 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47412 * 299.99849 * 5 3 2 34 34 H 1.08996 * 109.46957 * 180.02562 * 8 6 3 35 35 H 1.09001 * 109.47228 * 300.00558 * 8 6 3 36 36 H 1.08999 * 109.46831 * 60.00129 * 8 6 3 37 37 H 1.09008 * 109.47077 * 44.03477 * 10 9 6 38 38 H 1.08999 * 109.47004 * 164.03556 * 10 9 6 39 39 H 0.96998 * 120.00002 * 359.97438 * 13 11 10 40 40 H 1.08993 * 109.47787 * 300.00650 * 14 13 11 41 41 H 1.09003 * 109.46555 * 60.00724 * 14 13 11 42 42 H 0.97002 * 119.99852 * 180.02562 * 18 17 15 43 43 H 1.08999 * 115.55115 * 33.13988 * 23 9 6 44 44 H 1.08999 * 117.49640 * 0.02562 * 24 23 9 45 45 H 1.09001 * 117.50125 * 145.02463 * 24 23 9 46 46 H 1.09004 * 117.49471 * 214.97904 * 25 23 9 47 47 H 1.08998 * 117.50011 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1266 1.3072 6 6 3.5649 1.4444 -0.1257 7 1 3.9995 0.9053 0.7161 8 6 3.9697 0.7602 -1.4330 9 7 4.0545 2.8294 -0.1263 10 6 5.5230 2.8686 -0.1263 11 6 6.0343 2.5381 1.2522 12 8 5.2571 2.2182 2.1267 13 7 7.3552 2.5981 1.5133 14 6 7.8522 2.2773 2.8536 15 6 9.3522 2.4193 2.8804 16 1 9.8824 2.7190 1.9884 17 6 10.0479 2.1667 4.0437 18 7 11.3570 2.2911 4.0672 19 14 9.1313 1.6478 5.5863 20 1 9.0225 0.1673 5.6231 21 1 9.8712 2.1197 6.7842 22 1 7.7711 2.2439 5.5779 23 6 3.5078 3.5805 -1.2643 24 6 4.4852 4.0179 -2.3571 25 6 3.9011 5.0534 -1.3929 26 1 -0.3632 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5877 2.1491 32 1 1.9982 3.1544 1.3070 33 1 0.5490 2.1254 1.3968 34 1 5.0560 0.7611 -1.5224 35 1 3.6063 -0.2675 -1.4330 36 1 3.5351 1.2992 -2.2749 37 1 5.9059 2.1394 -0.8404 38 1 5.8598 3.8658 -0.4094 39 1 7.9767 2.8536 0.8139 40 1 7.4092 2.9601 3.5785 41 1 7.5801 1.2525 3.1063 42 1 11.8464 2.1131 4.8855 43 1 2.5008 3.2996 -1.5728 44 1 5.5338 3.7480 -2.2318 45 1 4.1211 4.0252 -3.3845 46 1 3.1529 5.7416 -1.7864 47 1 4.5652 5.4652 -0.6330 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729544973.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:31 Heat of formation + Delta-G solvation = -33.934850 kcal Electronic energy + Delta-G solvation = -23415.825372 eV Core-core repulsion = 20212.519731 eV Total energy + Delta-G solvation = -3203.305641 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29407 -39.66140 -37.53396 -36.12043 -34.49223 -34.39264 -31.48866 -30.12134 -29.99240 -27.65089 -25.27746 -24.13802 -23.43302 -23.14357 -22.05762 -21.17252 -19.85460 -19.00042 -17.96906 -17.29732 -17.23812 -16.51691 -16.12500 -15.85392 -15.66825 -15.37088 -14.88813 -14.70753 -14.51535 -14.34555 -14.10470 -13.98321 -13.44831 -13.36941 -13.13167 -13.01108 -12.74039 -12.70344 -12.51308 -12.44224 -12.30477 -12.08156 -11.94873 -11.75601 -11.66389 -11.37440 -11.31709 -11.16568 -11.01361 -10.92793 -10.61708 -9.88622 -8.95397 -8.41361 -6.48017 1.30801 1.33200 1.46128 1.78939 2.25675 2.28654 2.83890 2.94058 3.22289 3.69341 3.91449 3.99941 4.04552 4.08298 4.12919 4.20531 4.22869 4.31858 4.43379 4.50309 4.57010 4.67840 4.78893 4.79198 4.84893 4.87028 4.89561 5.02442 5.04431 5.07160 5.13975 5.14694 5.20973 5.24685 5.26657 5.30405 5.33567 5.40016 5.54722 5.59674 5.65854 6.00684 6.12281 6.26646 6.53062 6.89422 7.15659 7.47648 8.73428 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.004183 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.146560 B = 6691.587712 C = 7591.319135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.071 4.071 4 H 0.084 0.916 5 C -0.130 4.130 6 C 0.086 3.914 7 H 0.056 0.944 8 C -0.180 4.180 9 N -0.494 5.494 10 C 0.039 3.961 11 C 0.498 3.502 12 O -0.574 6.574 13 N -0.710 5.710 14 C 0.236 3.764 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.027 3.973 18 N -0.931 5.931 19 Si 0.937 3.063 20 H -0.265 1.265 21 H -0.272 1.272 22 H -0.263 1.263 23 C 0.019 3.981 24 C -0.211 4.211 25 C -0.179 4.179 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.406 0.594 40 H 0.009 0.991 41 H 0.008 0.992 42 H 0.272 0.728 43 H 0.136 0.864 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.562 -0.307 -15.576 25.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.089 4.089 4 H 0.102 0.898 5 C -0.187 4.187 6 C -0.022 4.022 7 H 0.075 0.925 8 C -0.239 4.239 9 N -0.215 5.215 10 C -0.092 4.092 11 C 0.285 3.715 12 O -0.454 6.454 13 N -0.361 5.361 14 C 0.112 3.888 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.173 4.173 18 N -0.570 5.570 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.197 1.197 22 H -0.188 1.188 23 C -0.089 4.089 24 C -0.249 4.249 25 C -0.217 4.217 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.106 0.894 38 H 0.134 0.866 39 H 0.242 0.758 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.082 0.918 43 H 0.153 0.847 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.106 -0.332 -14.366 25.534 hybrid contribution 1.057 -0.415 0.232 1.159 sum -20.049 -0.748 -14.134 24.542 Atomic orbital electron populations 1.21777 0.94760 1.01893 1.02117 1.21639 0.96779 0.95684 1.01814 1.21126 0.92711 0.96528 0.98543 0.89825 1.21631 1.00031 1.00519 0.96519 1.21759 0.96149 0.87148 0.97125 0.92542 1.22497 1.01236 1.02056 0.98099 1.61551 1.05063 1.14019 1.40871 1.22076 0.90356 1.04381 0.92372 1.21298 0.81783 0.76992 0.91471 1.90622 1.56495 1.49002 1.49244 1.46026 1.07388 1.68804 1.13923 1.19012 0.93180 0.94581 0.81990 1.21300 0.90509 1.47966 0.98598 0.92240 1.25584 0.95464 0.94418 1.01851 1.69979 1.07756 1.49634 1.29591 0.85868 0.79267 0.79553 0.79255 1.18977 1.19690 1.18763 1.22748 0.99119 0.95584 0.91474 1.23661 0.99816 1.04671 0.96799 1.23152 1.04159 0.92326 1.02043 0.91835 0.92347 0.92915 0.90799 0.93626 0.95525 0.93156 0.92098 0.93282 0.91063 0.90619 0.89395 0.86568 0.75849 0.97352 0.97401 0.91833 0.84682 0.88646 0.87119 0.86966 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.67 71.98 0.70 -1.49 16 2 C -0.12 -2.20 5.19 30.60 0.16 -2.04 16 3 C -0.07 -1.44 1.75 -10.79 -0.02 -1.46 16 4 H 0.08 1.41 6.15 -2.38 -0.01 1.40 16 5 C -0.13 -3.20 8.79 71.98 0.63 -2.57 16 6 C 0.09 2.09 1.66 44.92 0.07 2.17 16 7 H 0.06 1.85 6.60 -2.39 -0.02 1.84 16 8 C -0.18 -3.40 8.34 71.98 0.60 -2.79 16 9 N -0.49 -12.36 3.54 -850.39 -3.01 -15.37 16 10 C 0.04 1.03 4.00 85.56 0.34 1.37 16 11 C 0.50 18.92 7.62 87.66 0.67 19.59 16 12 O -0.57 -26.36 14.99 -3.05 -0.05 -26.41 16 13 N -0.71 -28.94 5.55 -466.80 -2.59 -31.53 16 14 C 0.24 11.86 4.50 85.63 0.38 12.25 16 15 C -0.55 -30.56 9.83 25.60 0.25 -30.31 16 16 H 0.06 3.48 7.84 -2.91 -0.02 3.46 16 17 C 0.03 1.56 5.47 84.66 0.46 2.02 16 18 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 19 Si 0.94 44.90 27.47 68.60 1.88 46.78 16 20 H -0.26 -12.26 7.11 99.48 0.71 -11.56 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.26 -12.65 6.54 99.48 0.65 -12.00 16 23 C 0.02 0.35 4.38 44.91 0.20 0.55 16 24 C -0.21 -3.18 9.55 30.62 0.29 -2.89 16 25 C -0.18 -3.10 9.90 30.62 0.30 -2.80 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.83 6.56 -2.39 -0.02 0.81 16 29 H 0.07 1.17 6.17 -2.39 -0.01 1.15 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.03 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 33 H 0.06 1.24 6.57 -2.39 -0.02 1.23 16 34 H 0.05 0.98 6.24 -2.39 -0.01 0.97 16 35 H 0.07 1.23 6.32 -2.39 -0.02 1.22 16 36 H 0.07 1.16 7.15 -2.39 -0.02 1.14 16 37 H 0.09 2.02 5.71 -2.38 -0.01 2.01 16 38 H 0.12 2.71 5.53 -2.39 -0.01 2.69 16 39 H 0.41 14.44 8.32 -92.71 -0.77 13.67 16 40 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 41 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.14 2.10 6.03 -2.39 -0.01 2.09 16 44 H 0.10 1.52 6.05 -2.39 -0.01 1.50 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.08 1.68 7.43 -2.39 -0.02 1.67 16 Total: -1.00 -68.06 355.13 1.72 -66.34 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.13 Total: 24.34 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 5.05 Total: -8.40 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -5.30 Total: -102.66 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -68.06 1.72 -66.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729544973.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.410 kcal (2) G-P(sol) polarization free energy of solvation -68.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds