Wall clock time and date at job start Tue Mar 31 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47074 * 2 1 4 4 H 1.08997 * 109.47306 * 305.00466 * 3 2 1 5 5 C 1.53003 * 109.47249 * 64.99968 * 3 2 1 6 6 C 1.53001 * 109.47036 * 184.99688 * 3 2 1 7 7 H 1.09006 * 109.45795 * 61.98940 * 6 3 2 8 8 C 1.53032 * 109.46649 * 302.00782 * 6 3 2 9 9 C 1.53121 * 109.27815 * 180.80450 * 8 6 3 10 10 C 1.53117 * 109.15967 * 57.65501 * 9 8 6 11 11 C 1.53039 * 109.27845 * 302.34514 * 10 9 8 12 12 N 1.46844 * 109.52435 * 59.18150 * 11 10 9 13 13 C 1.46895 * 110.99939 * 174.16409 * 12 11 10 14 14 C 1.50707 * 109.46893 * 288.38577 * 13 12 11 15 15 O 1.21275 * 119.99783 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99841 * 180.02562 * 14 13 12 17 17 C 1.46502 * 119.99686 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.46877 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00236 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00191 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99552 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 120.00294 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47447 * 90.00061 * 22 20 18 24 24 H 1.48503 * 109.47119 * 210.00409 * 22 20 18 25 25 H 1.48499 * 109.47001 * 329.99985 * 22 20 18 26 26 H 1.09002 * 109.47080 * 300.00009 * 1 2 3 27 27 H 1.09002 * 109.46743 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47334 * 59.99951 * 1 2 3 29 29 H 1.09001 * 109.47003 * 119.99687 * 2 1 3 30 30 H 1.08992 * 109.47009 * 239.99877 * 2 1 3 31 31 H 1.08993 * 109.47611 * 180.02562 * 5 3 2 32 32 H 1.08999 * 109.47143 * 300.00131 * 5 3 2 33 33 H 1.09000 * 109.47032 * 59.99895 * 5 3 2 34 34 H 1.09004 * 109.50222 * 300.74649 * 8 6 3 35 35 H 1.09002 * 109.50445 * 60.86206 * 8 6 3 36 36 H 1.09000 * 109.52010 * 177.55775 * 9 8 6 37 37 H 1.08998 * 109.52218 * 297.68166 * 9 8 6 38 38 H 1.09004 * 109.50659 * 62.28827 * 10 9 8 39 39 H 1.09006 * 109.50044 * 182.36342 * 10 9 8 40 40 H 1.09004 * 109.46114 * 179.20194 * 11 10 9 41 41 H 1.09001 * 109.46060 * 299.17494 * 11 10 9 42 42 H 1.08992 * 109.47809 * 48.38132 * 13 12 11 43 43 H 1.09001 * 109.47118 * 168.38662 * 13 12 11 44 44 H 0.96997 * 119.99891 * 0.02562 * 16 14 13 45 45 H 1.08992 * 109.47472 * 300.00394 * 17 16 14 46 46 H 1.09001 * 109.46905 * 60.00218 * 17 16 14 47 47 H 0.97002 * 119.99723 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4443 -0.1256 7 1 3.8516 0.9886 -1.0734 8 6 4.1727 0.6450 1.0291 9 6 5.6991 0.6664 0.9105 10 6 6.1830 2.1191 0.9132 11 6 5.5169 2.8758 -0.2382 12 7 4.0579 2.8268 -0.0787 13 6 3.3898 3.6586 -1.0883 14 6 3.6157 5.1141 -0.7694 15 8 4.2686 5.4275 0.2033 16 7 3.0913 6.0675 -1.5648 17 6 3.3104 7.4824 -1.2545 18 6 2.6251 8.3358 -2.2903 19 1 2.0803 7.8708 -3.0986 20 6 2.6934 9.7104 -2.2061 21 7 3.3572 10.2766 -1.2219 22 14 1.8433 10.7682 -3.4895 23 1 0.4546 11.0587 -3.0508 24 1 2.5878 12.0427 -3.6526 25 1 1.8117 10.0442 -4.7857 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.9981 3.1543 1.3072 32 1 0.5489 2.1253 1.3969 33 1 2.0699 1.5875 2.1492 34 1 3.8750 1.0921 1.9776 35 1 3.8186 -0.3850 0.9848 36 1 6.1376 0.1348 1.7550 37 1 5.9990 0.1833 -0.0194 38 1 5.9171 2.5895 1.8599 39 1 7.2655 2.1423 0.7868 40 1 5.8485 3.9141 -0.2304 41 1 5.7943 2.4131 -1.1854 42 1 3.7998 3.4346 -2.0730 43 1 2.3204 3.4473 -1.0834 44 1 2.5681 5.8168 -2.3422 45 1 2.9005 7.7062 -0.2697 46 1 4.3797 7.6941 -1.2595 47 1 3.4056 11.2436 -1.1629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738315616.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:28 Heat of formation + Delta-G solvation = -57.447316 kcal Electronic energy + Delta-G solvation = -23349.245878 eV Core-core repulsion = 20144.920660 eV Total energy + Delta-G solvation = -3204.325218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.06083 -38.25270 -35.81897 -34.13512 -33.42102 -32.26133 -30.96854 -28.57457 -28.23419 -26.39809 -25.03970 -23.56002 -22.66508 -21.83240 -20.32640 -19.57151 -18.78080 -17.06914 -16.12706 -15.67318 -15.42441 -15.25339 -14.92882 -14.71233 -14.29309 -13.96217 -13.85656 -13.73024 -13.35609 -12.90080 -12.71259 -12.54655 -12.19378 -12.05894 -11.96059 -11.90919 -11.84864 -11.38989 -11.17230 -11.01643 -10.95690 -10.87591 -10.84032 -10.62320 -10.45954 -10.29714 -10.14360 -9.96477 -9.36854 -8.92497 -8.70219 -8.06783 -7.79515 -6.14589 -4.21253 3.25171 3.31182 3.33530 3.47898 3.70979 4.27987 4.45146 4.59950 4.69365 4.87580 4.92860 5.00878 5.06911 5.17947 5.21416 5.26798 5.42732 5.46955 5.51897 5.51911 5.58228 5.61153 5.65890 5.70837 5.76342 5.85249 5.90258 5.94011 5.94810 5.99744 6.05052 6.09666 6.21544 6.29586 6.35023 6.45093 6.57238 7.13160 7.28885 7.37889 7.51406 7.56281 7.71704 8.00353 8.69703 8.83322 9.20332 9.45852 10.95635 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020986 B = 0.003729 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.906274 B = 7506.821987 C = 8441.963710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.143 4.143 6 C 0.091 3.909 7 H 0.036 0.964 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.114 4.114 11 C 0.057 3.943 12 N -0.508 5.508 13 C 0.028 3.972 14 C 0.499 3.501 15 O -0.537 6.537 16 N -0.718 5.718 17 C 0.252 3.748 18 C -0.543 4.543 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.903 3.097 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.273 1.273 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.023 0.977 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.388 0.612 45 H 0.026 0.974 46 H 0.025 0.975 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 -22.150 1.403 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.200 4.200 6 C -0.017 4.017 7 H 0.054 0.946 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.151 4.151 11 C -0.071 4.071 12 N -0.233 5.233 13 C -0.103 4.103 14 C 0.283 3.717 15 O -0.415 6.415 16 N -0.367 5.367 17 C 0.131 3.869 18 C -0.581 4.581 19 H 0.080 0.920 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.198 1.198 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.120 0.880 44 H 0.220 0.780 45 H 0.044 0.956 46 H 0.043 0.957 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.748 -21.511 2.652 21.687 hybrid contribution -0.506 0.272 -1.950 2.033 sum -1.255 -21.240 0.702 21.288 Atomic orbital electron populations 1.21818 0.95888 1.01253 1.02119 1.21600 0.95864 0.96338 1.01797 1.21311 0.94032 0.96034 0.99526 0.91116 1.21822 0.99947 1.02072 0.96120 1.21648 0.94273 0.88502 0.97291 0.94648 1.21705 0.94912 0.99030 0.99319 1.21604 0.96011 0.97059 1.01223 1.21540 0.98943 0.94775 0.99891 1.22157 0.86801 1.02045 0.96069 1.61506 1.05037 1.08393 1.48354 1.22130 1.01321 0.92798 0.94086 1.20328 0.80603 0.87045 0.83752 1.90638 1.39926 1.83042 1.27850 1.46455 1.53175 1.08673 1.28396 1.19051 0.97109 0.73975 0.96725 1.21239 1.34311 0.91417 1.11122 0.91970 1.24953 0.95249 0.97871 0.95950 1.69981 1.40613 1.10846 1.30865 0.86428 0.79436 0.79713 0.81403 1.20464 1.21023 1.19778 0.92302 0.93098 0.92838 0.91682 0.92404 0.91039 0.93384 0.92757 0.90589 0.91662 0.92126 0.92694 0.90821 0.91932 0.89141 0.95898 0.92765 0.87956 0.77979 0.95618 0.95725 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.12 -0.99 4.84 -26.73 -0.13 -1.12 16 3 C -0.09 -0.93 1.69 -90.62 -0.15 -1.08 16 4 H 0.07 0.75 6.11 -51.93 -0.32 0.43 16 5 C -0.14 -1.64 8.42 37.16 0.31 -1.32 16 6 C 0.09 1.02 1.68 -67.72 -0.11 0.91 16 7 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 8 C -0.11 -1.13 4.66 -26.65 -0.12 -1.26 16 9 C -0.12 -1.22 6.00 -26.61 -0.16 -1.37 16 10 C -0.11 -1.38 6.09 -26.65 -0.16 -1.54 16 11 C 0.06 0.81 5.11 -3.83 -0.02 0.79 16 12 N -0.51 -7.21 3.32 -228.12 -0.76 -7.97 16 13 C 0.03 0.41 4.98 -4.98 -0.02 0.39 16 14 C 0.50 10.00 7.51 -10.98 -0.08 9.92 16 15 O -0.54 -12.92 14.82 5.56 0.08 -12.83 16 16 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 17 C 0.25 6.74 5.43 -5.20 -0.03 6.72 16 18 C -0.54 -14.82 9.28 -34.44 -0.32 -15.13 16 19 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 22 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.06 0.48 6.57 -51.93 -0.34 0.14 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.52 6.70 -51.93 -0.35 0.18 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 1.04 7.31 -51.93 -0.38 0.66 16 32 H 0.05 0.51 6.56 -51.93 -0.34 0.16 16 33 H 0.05 0.59 6.46 -51.93 -0.34 0.26 16 34 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 35 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.57 6.33 -51.93 -0.33 1.25 16 41 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.10 1.34 5.41 -51.93 -0.28 1.06 16 44 H 0.39 7.05 8.32 -40.82 -0.34 6.71 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 354.95 15.07 5.35 5.35 Total: -1.00 -31.17 354.95 -8.98 -40.16 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -8.29 Total: 3.76 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.74 Total: -3.31 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.36 Total: -49.05 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.17 -8.98 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738315616.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.292 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds