Wall clock time and date at job start Tue Mar 31 2020 06:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 N 1.46903 * 109.47293 * 120.00143 * 2 1 3 5 5 C 1.46901 * 110.99766 * 293.38501 * 4 2 1 6 6 C 1.50695 * 109.47149 * 74.18437 * 5 4 2 7 7 H 1.08006 * 119.99946 * 5.10618 * 6 5 4 8 8 C 1.37874 * 120.00324 * 185.11088 * 6 5 4 9 9 N 1.31519 * 119.99859 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00589 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47469 * 89.99620 * 10 8 6 12 12 H 1.48501 * 109.47521 * 209.99988 * 10 8 6 13 13 H 1.48504 * 109.47024 * 329.99894 * 10 8 6 14 14 C 1.46897 * 110.99735 * 169.43343 * 4 2 1 15 15 N 1.46503 * 109.46971 * 278.39453 * 14 4 2 16 16 C 1.34609 * 134.66469 * 284.75950 * 15 14 4 17 17 O 1.21277 * 131.84848 * 0.02562 * 16 15 14 18 18 C 1.50566 * 96.30349 * 180.02562 * 16 15 14 19 19 C 1.53007 * 114.56930 * 246.82486 * 18 16 15 20 20 C 1.52998 * 114.22287 * 113.62222 * 18 16 15 21 21 C 1.46349 * 134.66513 * 105.12273 * 15 14 4 22 22 C 1.52999 * 113.05485 * 295.42982 * 21 15 14 23 23 C 1.53002 * 113.05311 * 64.59218 * 21 15 14 24 24 H 1.09004 * 109.46856 * 310.11995 * 1 2 3 25 25 H 1.09000 * 109.47064 * 70.11968 * 1 2 3 26 26 H 1.09002 * 109.46828 * 190.12222 * 1 2 3 27 27 H 1.09004 * 109.47197 * 240.00344 * 2 1 3 28 28 H 1.09005 * 109.47355 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47568 * 300.00064 * 3 2 1 30 30 H 1.09004 * 109.47318 * 60.00128 * 3 2 1 31 31 H 1.09001 * 109.46577 * 194.18233 * 5 4 2 32 32 H 1.09000 * 109.46968 * 314.17811 * 5 4 2 33 33 H 0.97000 * 119.99969 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47685 * 38.39458 * 14 4 2 35 35 H 1.09004 * 109.46997 * 158.40166 * 14 4 2 36 36 H 1.08997 * 109.46968 * 152.78425 * 19 18 16 37 37 H 1.08997 * 109.47198 * 272.78923 * 19 18 16 38 38 H 1.09009 * 109.46766 * 32.78935 * 19 18 16 39 39 H 1.09001 * 109.46815 * 327.37343 * 20 18 16 40 40 H 1.08998 * 109.46975 * 87.37601 * 20 18 16 41 41 H 1.08999 * 109.47185 * 207.37813 * 20 18 16 42 42 H 1.09003 * 109.46465 * 65.34726 * 22 21 15 43 43 H 1.08994 * 109.47729 * 185.34847 * 22 21 15 44 44 H 1.09006 * 109.47241 * 305.35485 * 22 21 15 45 45 H 1.09000 * 109.46926 * 40.49525 * 23 21 15 46 46 H 1.09003 * 109.46931 * 160.49584 * 23 21 15 47 47 H 1.08994 * 109.46747 * 280.49156 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6820 0.0587 2.4158 6 6 0.2111 -0.0919 2.7071 7 1 -0.3942 -0.7515 2.1030 8 6 -0.3619 0.6125 3.7446 9 7 0.3753 1.4155 4.4805 10 14 -2.1852 0.4264 4.1053 11 1 -2.3878 -0.6807 5.0739 12 1 -2.7072 1.6911 4.6827 13 1 -2.9103 0.1210 2.8458 14 6 3.4662 -0.9337 1.1142 15 7 3.7150 -2.1299 0.3057 16 6 3.5932 -3.4543 0.5131 17 8 3.2229 -4.0919 1.4760 18 6 4.0701 -3.8796 -0.8503 19 6 3.0000 -4.5416 -1.7207 20 6 5.4002 -4.6356 -0.8424 21 6 4.2032 -2.3701 -1.0529 22 6 3.2650 -1.8253 -2.1317 23 6 5.6512 -1.9202 -1.2575 24 1 -0.3633 0.6623 0.7859 25 1 -0.3633 0.3495 -0.9664 26 1 -0.3633 -1.0117 0.1806 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 2.2601 -0.3291 3.2545 32 1 1.9173 1.1128 2.2689 33 1 -0.0277 1.9107 5.2106 34 1 3.9513 -0.0746 0.6508 35 1 3.8695 -1.0821 2.1160 36 1 3.2370 -4.3815 -2.7725 37 1 2.9732 -5.6113 -1.5130 38 1 2.0273 -4.1035 -1.4967 39 1 6.0267 -4.2602 -0.0332 40 1 5.2128 -5.6990 -0.6934 41 1 5.9088 -4.4862 -1.7948 42 1 3.2280 -0.7379 -2.0656 43 1 3.6336 -2.1172 -3.1150 44 1 2.2649 -2.2326 -1.9829 45 1 6.2404 -2.1810 -0.3784 46 1 6.0660 -2.4184 -2.1338 47 1 5.6786 -0.8408 -1.4062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749166261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:11 Heat of formation + Delta-G solvation = 7.718326 kcal Electronic energy + Delta-G solvation = -24543.765572 eV Core-core repulsion = 21342.266148 eV Total energy + Delta-G solvation = -3201.499423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53189 -37.71888 -36.57366 -33.30387 -32.49951 -31.18157 -30.28008 -29.01829 -27.95095 -26.41289 -26.09038 -25.33163 -22.23525 -21.83832 -20.78259 -18.82279 -17.03742 -16.88576 -16.34192 -15.83305 -15.68634 -15.10646 -14.63760 -14.49053 -14.10861 -13.60013 -13.30899 -13.04261 -12.93406 -12.70199 -12.48762 -12.43358 -12.31263 -12.23865 -11.90372 -11.85021 -11.75508 -11.36478 -11.26328 -11.06177 -10.92167 -10.83340 -10.73768 -10.58221 -10.53551 -10.28152 -10.13120 -9.46332 -9.25956 -9.03123 -8.50485 -8.34492 -7.25179 -5.99029 -3.95709 2.93623 3.25179 3.34758 3.41067 3.44416 3.87941 4.44466 4.46842 4.65764 4.86826 4.90908 4.99072 5.34431 5.35573 5.38359 5.41538 5.54032 5.56885 5.59004 5.65741 5.68443 5.77286 5.79245 5.82170 5.84235 5.86886 5.93576 5.98591 6.04739 6.12987 6.29693 6.35105 6.48264 6.54474 6.70157 6.90794 6.96379 7.16332 7.25441 7.42496 7.47442 7.87400 8.13390 8.20016 8.53184 8.69614 9.08656 9.64143 11.11395 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.005108 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.987432 B = 5480.010154 C = 5758.805003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 C -0.187 4.187 4 N -0.542 5.542 5 C 0.190 3.810 6 C -0.496 4.496 7 H 0.071 0.929 8 C 0.052 3.948 9 N -0.901 5.901 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.273 1.273 14 C 0.300 3.700 15 N -0.608 5.608 16 C 0.526 3.474 17 O -0.512 6.512 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.120 4.120 21 C 0.150 3.850 22 C -0.153 4.153 23 C -0.148 4.148 24 H 0.091 0.909 25 H 0.026 0.974 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.077 0.923 31 H 0.022 0.978 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.071 0.929 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.268 -5.785 -16.202 20.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 C -0.245 4.245 4 N -0.268 5.268 5 C 0.065 3.935 6 C -0.535 4.535 7 H 0.090 0.910 8 C -0.148 4.148 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.198 1.198 14 C 0.090 3.910 15 N -0.345 5.345 16 C 0.311 3.689 17 O -0.384 6.384 18 C -0.119 4.119 19 C -0.178 4.178 20 C -0.178 4.178 21 C 0.064 3.936 22 C -0.211 4.211 23 C -0.206 4.206 24 H 0.110 0.890 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.040 0.960 32 H 0.030 0.970 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.760 -6.235 -15.307 19.195 hybrid contribution -0.618 0.982 0.368 1.217 sum 9.142 -5.253 -14.939 18.285 Atomic orbital electron populations 1.22129 0.94312 1.03084 1.00232 1.21646 0.96637 0.91251 0.92975 1.22503 0.99633 0.99684 1.02710 1.62028 1.10691 1.49739 1.04345 1.19848 0.97272 0.91677 0.84674 1.21334 0.93568 1.24583 1.14006 0.91047 1.24965 0.98067 0.95622 0.96153 1.69954 1.35607 1.28610 1.19944 0.86566 0.85396 0.77283 0.78618 1.20727 1.21454 1.19813 1.21708 0.90995 0.84293 0.93991 1.50408 1.63979 1.06184 1.13882 1.21809 0.76549 0.82596 0.87964 1.90680 1.47137 1.63707 1.36901 1.22371 0.98435 0.95084 0.95992 1.21499 0.97273 1.00537 0.98486 1.21501 0.93936 0.99999 1.02342 1.21561 0.94666 0.92986 0.84355 1.22165 0.99839 1.01673 0.97414 1.22016 0.94452 1.01730 1.02447 0.89034 0.95463 0.92783 0.91564 0.94161 0.93379 0.90398 0.95970 0.96978 0.93069 0.92819 0.90094 0.91295 0.91603 0.91621 0.92064 0.91549 0.91281 0.91629 0.91381 0.91054 0.91736 0.91037 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 7.72 37.16 0.29 -2.49 16 2 C 0.08 1.55 2.89 -67.71 -0.20 1.36 16 3 C -0.19 -3.25 8.50 37.16 0.32 -2.93 16 4 N -0.54 -11.61 4.58 -231.97 -1.06 -12.67 16 5 C 0.19 4.83 4.49 -4.98 -0.02 4.81 16 6 C -0.50 -13.67 6.59 -34.44 -0.23 -13.90 16 7 H 0.07 1.98 5.68 -52.48 -0.30 1.68 16 8 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 9 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 C 0.30 5.52 6.54 -63.31 -0.41 5.10 16 15 N -0.61 -9.92 3.11 -187.83 -0.58 -10.50 16 16 C 0.53 9.37 8.20 -23.39 -0.19 9.17 16 17 O -0.51 -11.62 18.03 5.56 0.10 -11.52 16 18 C -0.11 -1.39 1.57 -155.78 -0.24 -1.63 16 19 C -0.12 -1.27 8.03 37.16 0.30 -0.97 16 20 C -0.12 -1.14 8.10 37.16 0.30 -0.84 16 21 C 0.15 1.77 1.58 -144.22 -0.23 1.54 16 22 C -0.15 -1.63 6.74 37.16 0.25 -1.38 16 23 C -0.15 -1.38 8.17 37.16 0.30 -1.07 16 24 H 0.09 2.08 5.77 -51.93 -0.30 1.78 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 1.14 7.38 -51.93 -0.38 0.75 16 27 H 0.07 1.10 4.18 -51.93 -0.22 0.88 16 28 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.60 6.03 -51.93 -0.31 1.28 16 31 H 0.02 0.62 7.58 -51.93 -0.39 0.23 16 32 H 0.01 0.33 5.44 -51.93 -0.28 0.04 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.05 0.88 6.14 -51.93 -0.32 0.56 16 35 H 0.08 1.60 7.50 -51.93 -0.39 1.21 16 36 H 0.07 0.54 7.73 -51.93 -0.40 0.14 16 37 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.06 0.81 6.98 -51.92 -0.36 0.44 16 39 H 0.06 0.62 7.26 -51.93 -0.38 0.24 16 40 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 41 H 0.07 0.48 7.29 -51.93 -0.38 0.10 16 42 H 0.06 0.74 6.84 -51.93 -0.36 0.38 16 43 H 0.07 0.54 8.02 -51.93 -0.42 0.13 16 44 H 0.07 0.86 6.16 -51.93 -0.32 0.54 16 45 H 0.06 0.63 7.33 -51.93 -0.38 0.25 16 46 H 0.07 0.50 7.32 -51.93 -0.38 0.12 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 350.51 15.07 5.28 5.28 Total: -1.00 -32.24 350.51 -8.26 -40.50 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.85 Total: -0.32 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 0.14 Total: -1.84 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.91 Total: -48.94 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.10 Total: -11.52 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.24 -8.26 -40.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749166261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.215 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds