Wall clock time and date at job start Tue Mar 31 2020 06:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47141 * 2 1 4 4 N 1.46903 * 109.47293 * 120.00143 * 2 1 3 5 5 C 1.46901 * 110.99766 * 293.38501 * 4 2 1 6 6 C 1.50695 * 109.47149 * 74.18437 * 5 4 2 7 7 H 1.08006 * 119.99946 * 5.10618 * 6 5 4 8 8 C 1.37874 * 120.00324 * 185.11088 * 6 5 4 9 9 N 1.31519 * 119.99859 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00589 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.47469 * 89.99620 * 10 8 6 12 12 H 1.48501 * 109.47521 * 209.99988 * 10 8 6 13 13 H 1.48504 * 109.47024 * 329.99894 * 10 8 6 14 14 C 1.46897 * 110.99735 * 169.43343 * 4 2 1 15 15 N 1.46503 * 109.46971 * 278.39453 * 14 4 2 16 16 C 1.34609 * 134.66469 * 284.75950 * 15 14 4 17 17 O 1.21277 * 131.84848 * 0.02562 * 16 15 14 18 18 C 1.50566 * 96.30349 * 180.02562 * 16 15 14 19 19 C 1.53007 * 114.56930 * 246.82486 * 18 16 15 20 20 C 1.52998 * 114.22287 * 113.62222 * 18 16 15 21 21 C 1.46349 * 134.66513 * 105.12273 * 15 14 4 22 22 C 1.52999 * 113.05485 * 295.42982 * 21 15 14 23 23 C 1.53002 * 113.05311 * 64.59218 * 21 15 14 24 24 H 1.09004 * 109.46856 * 310.11995 * 1 2 3 25 25 H 1.09000 * 109.47064 * 70.11968 * 1 2 3 26 26 H 1.09002 * 109.46828 * 190.12222 * 1 2 3 27 27 H 1.09004 * 109.47197 * 240.00344 * 2 1 3 28 28 H 1.09005 * 109.47355 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47568 * 300.00064 * 3 2 1 30 30 H 1.09004 * 109.47318 * 60.00128 * 3 2 1 31 31 H 1.09001 * 109.46577 * 194.18233 * 5 4 2 32 32 H 1.09000 * 109.46968 * 314.17811 * 5 4 2 33 33 H 0.97000 * 119.99969 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47685 * 38.39458 * 14 4 2 35 35 H 1.09004 * 109.46997 * 158.40166 * 14 4 2 36 36 H 1.08997 * 109.46968 * 152.78425 * 19 18 16 37 37 H 1.08997 * 109.47198 * 272.78923 * 19 18 16 38 38 H 1.09009 * 109.46766 * 32.78935 * 19 18 16 39 39 H 1.09001 * 109.46815 * 327.37343 * 20 18 16 40 40 H 1.08998 * 109.46975 * 87.37601 * 20 18 16 41 41 H 1.08999 * 109.47185 * 207.37813 * 20 18 16 42 42 H 1.09003 * 109.46465 * 65.34726 * 22 21 15 43 43 H 1.08994 * 109.47729 * 185.34847 * 22 21 15 44 44 H 1.09006 * 109.47241 * 305.35485 * 22 21 15 45 45 H 1.09000 * 109.46926 * 40.49525 * 23 21 15 46 46 H 1.09003 * 109.46931 * 160.49584 * 23 21 15 47 47 H 1.08994 * 109.46747 * 280.49156 * 23 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6820 0.0587 2.4158 6 6 0.2111 -0.0919 2.7071 7 1 -0.3942 -0.7515 2.1030 8 6 -0.3619 0.6125 3.7446 9 7 0.3753 1.4155 4.4805 10 14 -2.1852 0.4264 4.1053 11 1 -2.3878 -0.6807 5.0739 12 1 -2.7072 1.6911 4.6827 13 1 -2.9103 0.1210 2.8458 14 6 3.4662 -0.9337 1.1142 15 7 3.7150 -2.1299 0.3057 16 6 3.5932 -3.4543 0.5131 17 8 3.2229 -4.0919 1.4760 18 6 4.0701 -3.8796 -0.8503 19 6 3.0000 -4.5416 -1.7207 20 6 5.4002 -4.6356 -0.8424 21 6 4.2032 -2.3701 -1.0529 22 6 3.2650 -1.8253 -2.1317 23 6 5.6512 -1.9202 -1.2575 24 1 -0.3633 0.6623 0.7859 25 1 -0.3633 0.3495 -0.9664 26 1 -0.3633 -1.0117 0.1806 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 2.2601 -0.3291 3.2545 32 1 1.9173 1.1128 2.2689 33 1 -0.0277 1.9107 5.2106 34 1 3.9513 -0.0746 0.6508 35 1 3.8695 -1.0821 2.1160 36 1 3.2370 -4.3815 -2.7725 37 1 2.9732 -5.6113 -1.5130 38 1 2.0273 -4.1035 -1.4967 39 1 6.0267 -4.2602 -0.0332 40 1 5.2128 -5.6990 -0.6934 41 1 5.9088 -4.4862 -1.7948 42 1 3.2280 -0.7379 -2.0656 43 1 3.6336 -2.1172 -3.1150 44 1 2.2649 -2.2326 -1.9829 45 1 6.2404 -2.1810 -0.3784 46 1 6.0660 -2.4184 -2.1338 47 1 5.6786 -0.8408 -1.4062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749166261.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:10 Heat of formation + Delta-G solvation = -14.043408 kcal Electronic energy + Delta-G solvation = -24544.709231 eV Core-core repulsion = 21342.266148 eV Total energy + Delta-G solvation = -3202.443083 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67656 -39.38008 -38.00568 -34.87892 -34.26936 -32.36465 -31.55221 -29.89113 -29.70906 -27.94297 -26.99809 -26.83061 -24.20481 -23.05790 -21.96402 -20.42009 -18.65178 -18.19631 -17.73836 -17.29921 -17.10176 -16.60940 -16.39474 -15.67482 -15.56276 -14.97179 -14.78893 -14.24687 -14.16980 -14.08289 -13.69053 -13.52698 -13.29494 -13.28717 -13.15146 -13.05264 -13.01021 -12.79309 -12.71572 -12.63420 -12.53726 -12.43098 -12.17306 -11.94830 -11.92394 -11.71715 -11.46316 -11.29993 -10.95130 -10.59149 -10.52329 -9.85945 -8.97670 -8.16884 -6.20497 1.36814 1.38935 1.48632 1.57382 2.00999 2.40228 2.79863 3.14478 3.37052 3.44502 3.81686 3.94210 4.04150 4.08530 4.17070 4.27605 4.35810 4.52584 4.52978 4.72875 4.75471 4.80913 4.81055 4.87676 4.90151 4.92101 4.94807 4.98704 5.05419 5.07183 5.09441 5.15187 5.20688 5.23564 5.25533 5.37228 5.53466 5.56654 5.66936 5.75189 5.80706 5.87677 6.12307 6.44100 6.63276 6.89820 7.31037 7.43616 8.93010 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023078 B = 0.005108 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.987432 B = 5480.010154 C = 5758.805003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.082 3.918 3 C -0.176 4.176 4 N -0.559 5.559 5 C 0.208 3.792 6 C -0.502 4.502 7 H 0.065 0.935 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.956 3.044 11 H -0.283 1.283 12 H -0.280 1.280 13 H -0.263 1.263 14 C 0.303 3.697 15 N -0.614 5.614 16 C 0.498 3.502 17 O -0.580 6.580 18 C -0.094 4.094 19 C -0.120 4.120 20 C -0.119 4.119 21 C 0.150 3.850 22 C -0.153 4.153 23 C -0.145 4.145 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.039 0.961 31 H -0.018 1.018 32 H 0.003 0.997 33 H 0.261 0.739 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.108 0.892 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.107 0.893 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.110 -6.024 -20.261 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.025 4.025 3 C -0.234 4.234 4 N -0.286 5.286 5 C 0.082 3.918 6 C -0.541 4.541 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.782 3.218 11 H -0.209 1.209 12 H -0.206 1.206 13 H -0.187 1.187 14 C 0.092 3.908 15 N -0.349 5.349 16 C 0.286 3.714 17 O -0.458 6.458 18 C -0.097 4.097 19 C -0.177 4.177 20 C -0.176 4.176 21 C 0.067 3.933 22 C -0.210 4.210 23 C -0.203 4.203 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.000 1.000 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.126 0.874 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.628 -6.463 -19.434 23.074 hybrid contribution -0.834 1.023 1.591 2.068 sum 9.793 -5.440 -17.843 21.068 Atomic orbital electron populations 1.21999 0.95248 1.01032 1.00915 1.21786 0.95913 0.92305 0.92537 1.22361 1.00564 0.98339 1.02175 1.61906 1.12891 1.49803 1.03962 1.19442 0.95721 0.91232 0.85437 1.21570 0.94565 1.24082 1.13865 0.91664 1.25755 1.02387 0.95384 0.96013 1.70070 1.37419 1.29581 1.20545 0.85577 0.80377 0.77287 0.78602 1.20894 1.20578 1.18719 1.21524 0.89358 0.86199 0.93699 1.50640 1.63218 1.05095 1.15959 1.23263 0.75570 0.83109 0.89455 1.90622 1.50116 1.65231 1.39852 1.22484 0.99872 0.96072 0.91303 1.21574 0.95483 1.00350 1.00314 1.21585 0.92304 0.99598 1.04139 1.21937 0.96656 0.92705 0.82008 1.22186 0.98734 1.01337 0.98765 1.22040 0.92099 1.02505 1.03616 0.92380 0.91925 0.94800 0.88625 0.92557 0.90482 0.94175 1.00010 0.97975 0.92986 0.90267 0.93089 0.87245 0.91253 0.93960 0.93152 0.91320 0.87213 0.91822 0.87308 0.92737 0.92722 0.87398 0.91523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 7.72 71.98 0.56 -4.74 16 2 C 0.08 3.01 2.89 44.91 0.13 3.14 16 3 C -0.18 -5.89 8.50 71.98 0.61 -5.28 16 4 N -0.56 -24.82 4.58 -887.80 -4.06 -28.88 16 5 C 0.21 11.20 4.49 85.56 0.38 11.59 16 6 C -0.50 -28.92 6.59 25.60 0.17 -28.75 16 7 H 0.07 3.77 5.68 -2.91 -0.02 3.75 16 8 C 0.00 0.11 5.46 84.65 0.46 0.57 16 9 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 10 Si 0.96 45.97 29.54 68.60 2.03 47.99 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 13 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 14 C 0.30 11.48 6.54 170.81 1.12 12.60 16 15 N -0.61 -19.99 3.11 -866.65 -2.69 -22.68 16 16 C 0.50 18.17 8.20 79.70 0.65 18.82 16 17 O -0.58 -28.07 18.03 -3.02 -0.05 -28.12 16 18 C -0.09 -2.05 1.57 -53.01 -0.08 -2.13 16 19 C -0.12 -2.18 8.03 71.98 0.58 -1.60 16 20 C -0.12 -1.87 8.10 71.98 0.58 -1.29 16 21 C 0.15 3.11 1.58 -4.35 -0.01 3.11 16 22 C -0.15 -2.60 6.74 71.98 0.49 -2.12 16 23 C -0.14 -2.08 8.17 71.98 0.59 -1.49 16 24 H 0.06 2.68 5.77 -2.38 -0.01 2.66 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.03 1.43 7.38 -2.39 -0.02 1.41 16 27 H 0.10 2.96 4.18 -2.39 -0.01 2.95 16 28 H 0.06 1.68 6.46 -2.38 -0.02 1.66 16 29 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.66 6.03 -2.38 -0.01 1.65 16 31 H -0.02 -1.10 7.58 -2.39 -0.02 -1.12 16 32 H 0.00 0.15 5.44 -2.39 -0.01 0.13 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.08 2.56 6.14 -2.39 -0.01 2.54 16 35 H 0.05 2.20 7.50 -2.39 -0.02 2.18 16 36 H 0.11 1.13 7.73 -2.39 -0.02 1.11 16 37 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 38 H 0.04 0.98 6.98 -2.38 -0.02 0.96 16 39 H 0.05 0.92 7.26 -2.39 -0.02 0.90 16 40 H 0.07 1.08 8.12 -2.39 -0.02 1.06 16 41 H 0.11 0.88 7.29 -2.39 -0.02 0.87 16 42 H 0.06 1.14 6.84 -2.39 -0.02 1.13 16 43 H 0.11 1.03 8.02 -2.39 -0.02 1.01 16 44 H 0.05 1.15 6.16 -2.38 -0.01 1.13 16 45 H 0.05 0.92 7.33 -2.39 -0.02 0.90 16 46 H 0.11 0.81 7.32 -2.39 -0.02 0.80 16 47 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.14 350.51 2.68 -74.46 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.95 Total: 11.59 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: 6.23 Total: 2.41 kcal Atomic # 7 Polarization: -101.87 SS G_CDS: -6.47 Total: -108.34 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.05 Total: -28.12 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -77.14 2.68 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749166261.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.421 kcal (2) G-P(sol) polarization free energy of solvation -77.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds