Wall clock time and date at job start Tue Mar 31 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46947 * 2 1 4 4 N 1.46900 * 109.47298 * 119.99544 * 2 1 3 5 5 C 1.46904 * 110.99631 * 72.96036 * 4 2 1 6 6 C 1.50699 * 109.47246 * 66.04664 * 5 4 2 7 7 O 1.21281 * 119.99867 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99871 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99789 * 179.97438 * 8 6 5 10 10 C 1.50702 * 109.46805 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00312 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99804 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00292 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 120.00063 * 179.97438 * 12 10 9 15 15 H 1.48493 * 109.46944 * 59.99918 * 14 12 10 16 16 H 1.48498 * 109.46974 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46790 * 300.00184 * 14 12 10 18 18 C 1.46900 * 110.99969 * 309.00544 * 4 2 1 19 19 C 1.52996 * 109.46979 * 87.64185 * 18 4 2 20 20 C 1.53002 * 109.47068 * 179.97438 * 19 18 4 21 21 C 1.52999 * 109.46934 * 299.99385 * 20 19 18 22 22 C 1.53006 * 109.47069 * 60.00256 * 21 20 19 23 23 C 1.53001 * 109.46639 * 207.63705 * 18 4 2 24 24 H 1.09005 * 109.47089 * 306.39009 * 1 2 3 25 25 H 1.08995 * 109.46852 * 66.39308 * 1 2 3 26 26 H 1.08997 * 109.46865 * 186.38990 * 1 2 3 27 27 H 1.09002 * 109.47599 * 240.00252 * 2 1 3 28 28 H 1.09002 * 109.46990 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47030 * 299.99688 * 3 2 1 30 30 H 1.08996 * 109.47045 * 60.00023 * 3 2 1 31 31 H 1.08997 * 109.46771 * 186.04967 * 5 4 2 32 32 H 1.09002 * 109.47007 * 306.04432 * 5 4 2 33 33 H 0.97001 * 120.00255 * 359.97438 * 8 6 5 34 34 H 1.08996 * 109.47207 * 299.99412 * 9 8 6 35 35 H 1.09002 * 109.47220 * 59.99829 * 9 8 6 36 36 H 0.97001 * 120.00695 * 179.97438 * 13 12 10 37 37 H 1.08996 * 109.47301 * 327.63451 * 18 4 2 38 38 H 1.09002 * 109.47154 * 299.99427 * 19 18 4 39 39 H 1.08996 * 109.47703 * 59.99513 * 19 18 4 40 40 H 1.08999 * 109.47205 * 179.97438 * 20 19 18 41 41 H 1.08996 * 109.47248 * 59.99244 * 20 19 18 42 42 H 1.08997 * 109.47119 * 300.00533 * 21 20 19 43 43 H 1.09001 * 109.46830 * 179.97438 * 21 20 19 44 44 H 1.08990 * 109.47122 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47245 * 59.99450 * 22 21 20 46 46 H 1.08998 * 109.47565 * 299.99786 * 23 18 4 47 47 H 1.08999 * 109.47300 * 60.00194 * 23 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.8163 -2.1431 1.0897 6 6 2.6805 -2.6893 -0.0174 7 8 3.3951 -1.9434 -0.6529 8 7 2.6584 -4.0065 -0.3021 9 6 3.4981 -4.5373 -1.3788 10 6 3.2895 -6.0255 -1.4912 11 1 2.6006 -6.5260 -0.8269 12 6 3.9788 -6.7484 -2.4416 13 7 4.8188 -6.1393 -3.2497 14 14 3.7207 -8.5934 -2.5806 15 1 2.2939 -8.8721 -2.8830 16 1 4.5718 -9.1314 -3.6721 17 1 4.0909 -9.2429 -1.2975 18 6 1.3814 -0.1614 2.4113 19 6 0.0728 -0.9111 2.6687 20 6 -0.5917 -0.3585 3.9313 21 6 0.3466 -0.5458 5.1251 22 6 1.6554 0.2039 4.8678 23 6 2.3196 -0.3482 3.6054 24 1 -0.3633 0.6097 0.8273 25 1 -0.3633 0.4115 -0.9416 26 1 -0.3633 -1.0213 0.1144 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.0875 -2.6202 2.0314 32 1 0.7689 -2.3474 0.8675 33 1 2.0866 -4.6030 0.2058 34 1 3.2266 -4.0599 -2.3203 35 1 4.5456 -4.3333 -1.1568 36 1 5.3041 -6.6479 -3.9181 37 1 1.1718 0.8997 2.2764 38 1 -0.5956 -0.7781 1.8180 39 1 0.2824 -1.9722 2.8036 40 1 -1.5242 -0.8923 4.1144 41 1 -0.8012 0.7026 3.7969 42 1 0.5562 -1.6070 5.2595 43 1 -0.1266 -0.1517 6.0245 44 1 2.3236 0.0708 5.7184 45 1 1.4458 1.2651 4.7332 46 1 2.5292 -1.4093 3.7404 47 1 3.2519 0.1859 3.4220 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750617353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:07 Heat of formation + Delta-G solvation = -48.130988 kcal Electronic energy + Delta-G solvation = -23537.228993 eV Core-core repulsion = 20333.307761 eV Total energy + Delta-G solvation = -3203.921231 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34490 -38.33014 -36.30256 -34.07186 -32.37958 -31.95720 -30.97088 -29.60640 -27.61401 -27.17901 -25.55002 -22.71382 -22.52127 -22.11954 -20.09366 -19.98868 -18.89255 -16.99505 -16.32764 -15.92232 -15.33458 -15.05899 -14.87276 -14.46278 -14.37186 -14.11558 -13.85847 -13.55229 -13.46591 -12.70626 -12.63454 -12.46717 -12.42321 -12.23310 -11.90212 -11.82252 -11.65874 -11.44250 -11.20542 -11.18887 -11.11260 -10.96728 -10.88603 -10.78508 -10.30179 -10.27307 -10.23527 -9.96940 -9.38632 -8.86925 -8.70026 -8.04441 -7.79886 -6.14627 -4.21546 3.26080 3.30853 3.32317 3.46060 3.73878 4.27073 4.45145 4.55729 4.65879 4.80765 4.98161 5.09173 5.10138 5.21207 5.22867 5.27885 5.37292 5.40578 5.41153 5.47964 5.52648 5.55441 5.63826 5.71083 5.72971 5.83793 5.86227 5.89365 5.92965 5.99400 6.03520 6.08126 6.12532 6.29244 6.34319 6.38786 6.47989 7.17351 7.32911 7.37886 7.50336 7.55730 7.70879 8.00004 8.68601 8.82414 9.18745 9.45447 10.95525 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022759 B = 0.003688 C = 0.003430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.004363 B = 7589.370443 C = 8162.390535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.070 3.930 3 C -0.136 4.136 4 N -0.506 5.506 5 C 0.033 3.967 6 C 0.497 3.503 7 O -0.538 6.538 8 N -0.716 5.716 9 C 0.252 3.748 10 C -0.544 4.544 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.886 5.886 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.085 3.915 19 C -0.170 4.170 20 C -0.114 4.114 21 C -0.120 4.120 22 C -0.118 4.118 23 C -0.108 4.108 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.388 0.612 34 H 0.025 0.975 35 H 0.026 0.974 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.285 12.790 14.544 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.038 4.038 3 C -0.193 4.193 4 N -0.228 5.228 5 C -0.098 4.098 6 C 0.281 3.719 7 O -0.416 6.416 8 N -0.366 5.366 9 C 0.131 3.869 10 C -0.582 4.582 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.730 3.270 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.023 4.023 19 C -0.209 4.209 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.146 4.146 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.220 0.780 34 H 0.043 0.957 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.081 13.370 13.916 21.773 hybrid contribution -1.267 -1.586 0.074 2.032 sum -11.349 11.784 13.990 21.526 Atomic orbital electron populations 1.22790 0.98475 1.01513 1.01934 1.21886 0.91510 0.95848 0.94594 1.21764 1.02293 0.94728 1.00533 1.61983 1.57233 1.01765 1.01858 1.22067 0.98369 0.90109 0.99236 1.20395 0.83635 0.83043 0.84818 1.90629 1.41497 1.57628 1.51881 1.46455 1.45357 1.07110 1.37644 1.19054 0.90065 0.93152 0.84594 1.21201 1.26209 0.92188 1.18587 0.92015 1.24948 0.94751 0.99062 0.95217 1.69964 1.26182 1.36317 1.19848 0.86488 0.78208 0.84459 0.77829 1.20103 1.21071 1.20065 1.21760 0.91603 0.99099 0.89886 1.22787 0.98318 1.00958 0.98817 1.21465 0.98063 1.00865 0.94828 1.21552 0.95917 1.00689 0.97628 1.21517 0.96551 0.99700 0.97798 1.21516 0.98552 1.01573 0.92961 0.92183 0.92449 0.92470 0.87872 0.91621 0.92716 0.93374 0.88633 0.92175 0.77955 0.95706 0.95606 0.92413 0.90036 0.90221 0.91439 0.92325 0.92293 0.92026 0.92403 0.92033 0.92219 0.92037 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 7.32 37.16 0.27 -1.88 16 2 C 0.07 0.97 2.49 -67.71 -0.17 0.81 16 3 C -0.14 -1.69 9.22 37.16 0.34 -1.34 16 4 N -0.51 -7.08 4.05 -220.14 -0.89 -7.98 16 5 C 0.03 0.49 3.94 -4.97 -0.02 0.47 16 6 C 0.50 9.94 7.43 -10.99 -0.08 9.86 16 7 O -0.54 -12.89 14.43 5.56 0.08 -12.81 16 8 N -0.72 -15.14 5.55 -61.47 -0.34 -15.48 16 9 C 0.25 6.73 5.43 -5.19 -0.03 6.71 16 10 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 14 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 18 C 0.08 0.93 1.53 -67.71 -0.10 0.82 16 19 C -0.17 -1.64 3.59 -26.73 -0.10 -1.73 16 20 C -0.11 -0.93 5.92 -26.73 -0.16 -1.09 16 21 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 22 C -0.12 -1.00 5.92 -26.75 -0.16 -1.16 16 23 C -0.11 -1.14 5.40 -26.75 -0.14 -1.28 16 24 H 0.06 0.60 5.92 -51.93 -0.31 0.29 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.66 5.47 -51.93 -0.28 0.38 16 27 H 0.10 1.83 5.79 -51.93 -0.30 1.53 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.52 6.40 -51.93 -0.33 0.19 16 31 H 0.10 1.26 6.72 -51.93 -0.35 0.91 16 32 H 0.06 0.78 5.42 -51.93 -0.28 0.50 16 33 H 0.39 7.03 8.32 -40.82 -0.34 6.70 16 34 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 0.88 5.53 -51.93 -0.29 0.59 16 38 H 0.08 0.78 4.14 -51.93 -0.22 0.56 16 39 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.69 7.26 -51.93 -0.38 0.31 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 347.99 15.07 5.24 5.24 Total: -1.00 -31.03 347.99 -9.13 -40.15 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.01 Total: 4.91 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -0.92 Total: -4.41 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.50 Total: -48.99 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.03 -9.13 -40.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750617353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.976 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds