Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47639 * 2 1 4 4 H 1.09001 * 110.85439 * 57.33840 * 3 2 1 5 5 C 1.54632 * 110.96765 * 293.54779 * 3 2 1 6 6 C 1.51278 * 104.19422 * 217.07966 * 5 3 2 7 7 O 1.21281 * 124.94334 * 196.27234 * 6 5 3 8 8 N 1.34423 * 110.11721 * 16.25461 * 6 5 3 9 9 C 1.46503 * 124.35196 * 180.40888 * 8 6 5 10 10 N 1.46896 * 109.47385 * 86.31400 * 9 8 6 11 11 C 1.46897 * 110.99917 * 205.75069 * 10 9 8 12 12 C 1.50708 * 109.46935 * 159.21732 * 11 10 9 13 13 H 1.08000 * 120.00199 * 356.62108 * 12 11 10 14 14 C 1.37882 * 119.99682 * 176.89070 * 12 11 10 15 15 N 1.31516 * 120.00181 * 359.72856 * 14 12 11 16 16 Si 1.86799 * 119.99721 * 179.72742 * 14 12 11 17 17 H 1.48495 * 109.47089 * 89.99833 * 16 14 12 18 18 H 1.48500 * 109.47066 * 210.00222 * 16 14 12 19 19 H 1.48501 * 109.47245 * 329.99828 * 16 14 12 20 20 C 1.46891 * 110.99940 * 81.79469 * 10 9 8 21 21 C 1.53005 * 109.47288 * 201.47404 * 20 10 9 22 22 C 1.53000 * 109.46826 * 58.63023 * 21 20 10 23 23 C 1.52998 * 109.47363 * 178.62538 * 21 20 10 24 24 C 1.46760 * 111.29879 * 0.67035 * 8 6 5 25 25 H 1.09001 * 109.47698 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46875 * 300.00091 * 1 2 3 27 27 H 1.09005 * 109.47137 * 59.99423 * 1 2 3 28 28 H 1.09000 * 109.47169 * 239.99454 * 2 1 3 29 29 H 1.09005 * 109.47137 * 120.00576 * 2 1 3 30 30 H 1.08999 * 110.48475 * 98.40543 * 5 3 2 31 31 H 1.08994 * 110.60142 * 335.81294 * 5 3 2 32 32 H 1.09003 * 109.46692 * 326.31239 * 9 8 6 33 33 H 1.09004 * 109.46736 * 206.31540 * 9 8 6 34 34 H 1.09003 * 109.47451 * 39.22258 * 11 10 9 35 35 H 1.08997 * 109.47347 * 279.21921 * 11 10 9 36 36 H 0.96996 * 119.99839 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47575 * 321.47362 * 20 10 9 38 38 H 1.08996 * 109.47414 * 81.47973 * 20 10 9 39 39 H 1.09003 * 109.47248 * 298.63439 * 21 20 10 40 40 H 1.09004 * 109.47656 * 65.54163 * 22 21 20 41 41 H 1.08995 * 109.47605 * 185.54332 * 22 21 20 42 42 H 1.09007 * 109.47254 * 305.54288 * 22 21 20 43 43 H 1.08999 * 109.46971 * 60.00875 * 23 21 20 44 44 H 1.09003 * 109.46980 * 180.02562 * 23 21 20 45 45 H 1.09000 * 109.47236 * 300.00387 * 23 21 20 46 46 H 1.09001 * 110.25103 * 101.71978 * 24 8 6 47 47 H 1.09002 * 110.24918 * 223.71849 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6512 1.9915 0.8575 5 6 1.6807 2.1564 -1.3237 6 6 2.8807 3.0317 -1.6107 7 8 2.8944 3.9563 -2.3954 8 7 3.9296 2.6359 -0.8690 9 6 5.2484 3.2736 -0.8954 10 7 5.2667 4.3998 0.0475 11 6 6.2618 5.4041 -0.3513 12 6 5.9250 6.7265 0.2882 13 1 5.0288 6.8263 0.8826 14 6 6.7582 7.8106 0.1099 15 7 7.8495 7.6891 -0.6139 16 14 6.3368 9.4517 0.8962 17 1 6.9438 9.5225 2.2496 18 1 6.8696 10.5544 0.0563 19 1 4.8618 9.5830 1.0079 20 6 5.5093 3.9340 1.4193 21 6 5.0062 4.9847 2.4112 22 6 3.5133 5.2287 2.1821 23 6 5.2278 4.4846 3.8401 24 6 3.5859 1.4790 -0.0341 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.7857 2.7656 -1.1977 31 1 1.5377 1.4308 -2.1243 32 1 5.4553 3.6385 -1.9015 33 1 6.0089 2.5472 -0.6087 34 1 6.2541 5.5127 -1.4359 35 1 7.2515 5.0844 -0.0252 36 1 8.4358 8.4516 -0.7390 37 1 4.9791 2.9959 1.5837 38 1 6.5780 3.7780 1.5663 39 1 5.5534 5.9157 2.2631 40 1 2.9557 4.3243 2.4254 41 1 3.1765 6.0458 2.8201 42 1 3.3439 5.4900 1.1374 43 1 6.2913 4.3108 4.0033 44 1 4.8689 5.2330 4.5467 45 1 4.6805 3.5536 3.9881 46 1 3.9778 0.5637 -0.4777 47 1 3.9812 1.6099 0.9733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755911643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = -41.195076 kcal Electronic energy + Delta-G solvation = -23941.734659 eV Core-core repulsion = 20738.114192 eV Total energy + Delta-G solvation = -3203.620468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20187 -37.38539 -36.55555 -34.43345 -33.29876 -32.30605 -29.97633 -27.62686 -27.19087 -26.46170 -25.81753 -23.61405 -23.18595 -20.97765 -20.53284 -19.18625 -18.97648 -16.76728 -16.38594 -15.91390 -15.43709 -14.78882 -14.61625 -14.39272 -14.05743 -13.79869 -13.63551 -13.40686 -13.14495 -12.85901 -12.75620 -12.42159 -12.30549 -12.12991 -11.74998 -11.65449 -11.62554 -11.28275 -11.09000 -11.00250 -10.90598 -10.77188 -10.63168 -10.52160 -10.24603 -10.14133 -9.97433 -9.53152 -9.33694 -9.04487 -8.42357 -8.33553 -7.28335 -5.97506 -3.95981 2.99268 3.34560 3.40345 3.41557 3.46822 4.36290 4.45989 4.47149 4.57872 4.91194 5.02765 5.11411 5.18252 5.29807 5.36220 5.42142 5.51076 5.54017 5.59243 5.65023 5.72136 5.75787 5.78343 5.85682 5.91699 5.99508 6.02346 6.08672 6.14930 6.24229 6.27033 6.40990 6.50008 6.66744 6.79021 6.87947 7.17223 7.24506 7.30924 7.39767 7.55154 7.89876 8.13628 8.21766 8.53650 8.65826 9.10105 9.65751 11.13002 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.004904 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.302647 B = 5708.288707 C = 6217.164130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.099 4.099 4 H 0.090 0.910 5 C -0.150 4.150 6 C 0.520 3.480 7 O -0.524 6.524 8 N -0.607 5.607 9 C 0.291 3.709 10 N -0.544 5.544 11 C 0.198 3.802 12 C -0.500 4.500 13 H 0.076 0.924 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.272 1.272 20 C 0.079 3.921 21 C -0.106 4.106 22 C -0.127 4.127 23 C -0.143 4.143 24 C 0.105 3.895 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.045 0.955 34 H 0.027 0.973 35 H -0.002 1.002 36 H 0.260 0.740 37 H 0.046 0.954 38 H 0.025 0.975 39 H 0.111 0.889 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.040 0.960 46 H 0.066 0.934 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -16.652 4.497 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.118 4.118 4 H 0.109 0.891 5 C -0.190 4.190 6 C 0.307 3.693 7 O -0.399 6.399 8 N -0.342 5.342 9 C 0.080 3.920 10 N -0.270 5.270 11 C 0.073 3.927 12 C -0.538 4.538 13 H 0.094 0.906 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.197 1.197 20 C -0.049 4.049 21 C -0.125 4.125 22 C -0.184 4.184 23 C -0.201 4.201 24 C -0.019 4.019 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.129 0.871 40 H 0.048 0.952 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.529 -15.782 3.972 19.384 hybrid contribution 0.725 0.527 0.554 1.054 sum -9.804 -15.256 4.526 18.690 Atomic orbital electron populations 1.21777 0.95505 1.01567 1.02219 1.21506 0.96202 0.94909 1.02351 1.22225 0.94596 0.96844 0.98153 0.89150 1.22426 0.98414 0.99718 0.98440 1.20724 0.84920 0.83554 0.80119 1.90743 1.83550 1.29311 1.36330 1.48470 1.12610 1.30880 1.42261 1.21744 0.81150 0.90745 0.98399 1.61763 1.53186 1.11479 1.00588 1.19767 0.87265 0.89231 0.96412 1.21347 1.08108 0.93717 1.30678 0.90613 1.24989 0.95187 0.98883 0.95636 1.69955 1.13184 1.31013 1.39828 0.86583 0.78774 0.83644 0.79009 1.20799 1.21349 1.19727 1.22001 0.97289 0.96109 0.89527 1.21449 0.97521 1.01643 0.91839 1.21617 0.95241 0.98680 1.02881 1.21835 1.00577 0.99971 0.97680 1.22186 0.94926 0.88846 0.95904 0.92781 0.92592 0.92417 0.91615 0.91487 0.88565 0.88426 0.89387 0.93733 0.95539 0.98448 0.93055 0.93587 0.95708 0.87085 0.95158 0.94686 0.90712 0.93425 0.93331 0.94075 0.91584 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.76 37.16 0.36 -0.64 16 2 C -0.11 -0.78 5.28 -26.73 -0.14 -0.92 16 3 C -0.10 -0.94 3.20 -88.89 -0.28 -1.22 16 4 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.15 -1.73 5.58 -26.74 -0.15 -1.88 16 6 C 0.52 8.90 8.02 -10.86 -0.09 8.81 16 7 O -0.52 -11.69 17.64 5.56 0.10 -11.59 16 8 N -0.61 -9.48 3.12 -175.79 -0.55 -10.03 16 9 C 0.29 5.30 5.65 -63.32 -0.36 4.94 16 10 N -0.54 -11.43 3.60 -239.98 -0.86 -12.30 16 11 C 0.20 5.08 4.77 -4.97 -0.02 5.06 16 12 C -0.50 -13.75 7.24 -34.43 -0.25 -14.00 16 13 H 0.08 2.06 4.95 -52.49 -0.26 1.80 16 14 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 15 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 16 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.08 1.45 4.32 -3.83 -0.02 1.44 16 21 C -0.11 -1.97 2.41 -90.62 -0.22 -2.19 16 22 C -0.13 -2.30 8.45 37.16 0.31 -1.98 16 23 C -0.14 -2.17 9.19 37.16 0.34 -1.83 16 24 C 0.11 1.16 6.70 -3.03 -0.02 1.14 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.39 7.51 -51.93 -0.39 0.00 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 0.96 7.86 -51.93 -0.41 0.55 16 32 H 0.09 1.78 7.33 -51.93 -0.38 1.40 16 33 H 0.04 0.72 7.90 -51.93 -0.41 0.31 16 34 H 0.03 0.75 7.51 -51.93 -0.39 0.36 16 35 H 0.00 -0.06 7.69 -51.93 -0.40 -0.46 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.05 0.73 5.56 -51.93 -0.29 0.45 16 38 H 0.02 0.48 7.68 -51.93 -0.40 0.08 16 39 H 0.11 2.49 5.09 -51.93 -0.26 2.22 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.59 6.91 -51.93 -0.36 1.23 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 47 H 0.08 0.83 6.10 -51.93 -0.32 0.52 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -31.93 362.35 -9.22 -41.16 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -8.46 Total: -1.70 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -0.63 Total: -1.84 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: -0.68 Total: -48.34 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.93 -9.22 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755911643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.038 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds