Wall clock time and date at job start Tue Mar 31 2020 05:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47639 * 2 1 4 4 H 1.09001 * 110.85439 * 57.33840 * 3 2 1 5 5 C 1.54632 * 110.96765 * 293.54779 * 3 2 1 6 6 C 1.51278 * 104.19422 * 217.07966 * 5 3 2 7 7 O 1.21281 * 124.94334 * 196.27234 * 6 5 3 8 8 N 1.34423 * 110.11721 * 16.25461 * 6 5 3 9 9 C 1.46503 * 124.35196 * 180.40888 * 8 6 5 10 10 N 1.46896 * 109.47385 * 86.31400 * 9 8 6 11 11 C 1.46897 * 110.99917 * 205.75069 * 10 9 8 12 12 C 1.50708 * 109.46935 * 159.21732 * 11 10 9 13 13 H 1.08000 * 120.00199 * 356.62108 * 12 11 10 14 14 C 1.37882 * 119.99682 * 176.89070 * 12 11 10 15 15 N 1.31516 * 120.00181 * 359.72856 * 14 12 11 16 16 Si 1.86799 * 119.99721 * 179.72742 * 14 12 11 17 17 H 1.48495 * 109.47089 * 89.99833 * 16 14 12 18 18 H 1.48500 * 109.47066 * 210.00222 * 16 14 12 19 19 H 1.48501 * 109.47245 * 329.99828 * 16 14 12 20 20 C 1.46891 * 110.99940 * 81.79469 * 10 9 8 21 21 C 1.53005 * 109.47288 * 201.47404 * 20 10 9 22 22 C 1.53000 * 109.46826 * 58.63023 * 21 20 10 23 23 C 1.52998 * 109.47363 * 178.62538 * 21 20 10 24 24 C 1.46760 * 111.29879 * 0.67035 * 8 6 5 25 25 H 1.09001 * 109.47698 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46875 * 300.00091 * 1 2 3 27 27 H 1.09005 * 109.47137 * 59.99423 * 1 2 3 28 28 H 1.09000 * 109.47169 * 239.99454 * 2 1 3 29 29 H 1.09005 * 109.47137 * 120.00576 * 2 1 3 30 30 H 1.08999 * 110.48475 * 98.40543 * 5 3 2 31 31 H 1.08994 * 110.60142 * 335.81294 * 5 3 2 32 32 H 1.09003 * 109.46692 * 326.31239 * 9 8 6 33 33 H 1.09004 * 109.46736 * 206.31540 * 9 8 6 34 34 H 1.09003 * 109.47451 * 39.22258 * 11 10 9 35 35 H 1.08997 * 109.47347 * 279.21921 * 11 10 9 36 36 H 0.96996 * 119.99839 * 180.02562 * 15 14 12 37 37 H 1.09003 * 109.47575 * 321.47362 * 20 10 9 38 38 H 1.08996 * 109.47414 * 81.47973 * 20 10 9 39 39 H 1.09003 * 109.47248 * 298.63439 * 21 20 10 40 40 H 1.09004 * 109.47656 * 65.54163 * 22 21 20 41 41 H 1.08995 * 109.47605 * 185.54332 * 22 21 20 42 42 H 1.09007 * 109.47254 * 305.54288 * 22 21 20 43 43 H 1.08999 * 109.46971 * 60.00875 * 23 21 20 44 44 H 1.09003 * 109.46980 * 180.02562 * 23 21 20 45 45 H 1.09000 * 109.47236 * 300.00387 * 23 21 20 46 46 H 1.09001 * 110.25103 * 101.71978 * 24 8 6 47 47 H 1.09002 * 110.24918 * 223.71849 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6512 1.9915 0.8575 5 6 1.6807 2.1564 -1.3237 6 6 2.8807 3.0317 -1.6107 7 8 2.8944 3.9563 -2.3954 8 7 3.9296 2.6359 -0.8690 9 6 5.2484 3.2736 -0.8954 10 7 5.2667 4.3998 0.0475 11 6 6.2618 5.4041 -0.3513 12 6 5.9250 6.7265 0.2882 13 1 5.0288 6.8263 0.8826 14 6 6.7582 7.8106 0.1099 15 7 7.8495 7.6891 -0.6139 16 14 6.3368 9.4517 0.8962 17 1 6.9438 9.5225 2.2496 18 1 6.8696 10.5544 0.0563 19 1 4.8618 9.5830 1.0079 20 6 5.5093 3.9340 1.4193 21 6 5.0062 4.9847 2.4112 22 6 3.5133 5.2287 2.1821 23 6 5.2278 4.4846 3.8401 24 6 3.5859 1.4790 -0.0341 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 0.7857 2.7656 -1.1977 31 1 1.5377 1.4308 -2.1243 32 1 5.4553 3.6385 -1.9015 33 1 6.0089 2.5472 -0.6087 34 1 6.2541 5.5127 -1.4359 35 1 7.2515 5.0844 -0.0252 36 1 8.4358 8.4516 -0.7390 37 1 4.9791 2.9959 1.5837 38 1 6.5780 3.7780 1.5663 39 1 5.5534 5.9157 2.2631 40 1 2.9557 4.3243 2.4254 41 1 3.1765 6.0458 2.8201 42 1 3.3439 5.4900 1.1374 43 1 6.2913 4.3108 4.0033 44 1 4.8689 5.2330 4.5467 45 1 4.6805 3.5536 3.9881 46 1 3.9778 0.5637 -0.4777 47 1 3.9812 1.6099 0.9733 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755911643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:18 Heat of formation + Delta-G solvation = -60.924230 kcal Electronic energy + Delta-G solvation = -23942.590180 eV Core-core repulsion = 20738.114192 eV Total energy + Delta-G solvation = -3204.475988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41385 -38.99625 -37.75611 -35.67467 -34.99430 -33.99645 -31.04158 -29.15170 -28.60400 -27.81643 -27.16914 -25.34042 -24.03966 -22.75011 -21.28385 -20.64841 -20.36024 -18.55245 -17.71395 -17.22871 -16.96958 -16.58448 -15.94581 -15.68416 -15.26135 -15.23404 -14.93905 -14.41518 -14.36471 -14.15263 -14.01723 -13.92364 -13.69641 -13.24680 -13.11206 -13.07835 -12.87202 -12.72402 -12.60521 -12.41220 -12.32251 -11.99539 -11.79173 -11.69899 -11.63484 -11.52544 -11.42835 -11.33391 -10.91314 -10.71655 -10.51495 -9.74723 -9.01123 -8.16013 -6.21562 1.37447 1.39698 1.50251 1.66279 2.14683 2.41235 3.15233 3.33772 3.49190 3.55013 3.84849 4.03749 4.11640 4.20738 4.30131 4.39866 4.44407 4.48524 4.55274 4.65226 4.68652 4.70358 4.79542 4.83900 4.92757 4.97975 5.00878 5.03965 5.09724 5.11298 5.20055 5.23960 5.28772 5.30564 5.42808 5.45994 5.57603 5.59625 5.70539 5.78017 5.85113 6.12051 6.22268 6.48579 6.61556 6.91848 7.30538 7.44575 8.94309 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020518 B = 0.004904 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.302647 B = 5708.288707 C = 6217.164130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.104 4.104 3 C -0.085 4.085 4 H 0.092 0.908 5 C -0.137 4.137 6 C 0.503 3.497 7 O -0.592 6.592 8 N -0.605 5.605 9 C 0.292 3.708 10 N -0.552 5.552 11 C 0.217 3.783 12 C -0.504 4.504 13 H 0.077 0.923 14 C -0.001 4.001 15 N -0.938 5.938 16 Si 0.957 3.043 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.269 1.269 20 C 0.082 3.918 21 C -0.108 4.108 22 C -0.116 4.116 23 C -0.134 4.134 24 C 0.099 3.901 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.053 0.947 33 H 0.072 0.928 34 H -0.013 1.013 35 H -0.025 1.025 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.015 0.985 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.035 0.965 43 H 0.047 0.953 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.131 -19.021 6.986 23.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.104 4.104 4 H 0.110 0.890 5 C -0.177 4.177 6 C 0.292 3.708 7 O -0.472 6.472 8 N -0.339 5.339 9 C 0.080 3.920 10 N -0.278 5.278 11 C 0.090 3.910 12 C -0.542 4.542 13 H 0.095 0.905 14 C -0.198 4.198 15 N -0.579 5.579 16 Si 0.783 3.217 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.194 1.194 20 C -0.046 4.046 21 C -0.127 4.127 22 C -0.174 4.174 23 C -0.191 4.191 24 C -0.022 4.022 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.138 0.862 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.005 0.995 35 H -0.007 1.007 36 H 0.070 0.930 37 H 0.099 0.901 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.351 -18.215 6.505 22.949 hybrid contribution 1.274 1.177 -0.240 1.751 sum -11.077 -17.038 6.265 21.266 Atomic orbital electron populations 1.21791 0.95219 1.02192 1.02030 1.21478 0.96326 0.92850 1.03542 1.22229 0.93123 0.98443 0.96635 0.88999 1.22427 0.95537 0.99192 1.00522 1.21807 0.86728 0.83213 0.79020 1.90700 1.84842 1.32489 1.39167 1.48545 1.11217 1.31572 1.42575 1.21571 0.83563 0.90681 0.96192 1.61671 1.51477 1.12137 1.02492 1.19343 0.87420 0.90524 0.93690 1.21653 1.07900 0.94553 1.30125 0.90457 1.25840 0.95109 1.02593 0.96254 1.70086 1.14341 1.32069 1.41418 0.85555 0.78561 0.79106 0.78521 1.19384 1.21190 1.19387 1.22070 0.97209 0.97540 0.87759 1.21367 0.97177 0.99859 0.94301 1.21481 0.95254 1.00203 1.00421 1.21734 1.01152 1.01330 0.94915 1.22545 0.96363 0.87706 0.95605 0.91799 0.92661 0.92816 0.90821 0.89931 0.88161 0.86225 0.92830 0.91004 0.99487 1.00727 0.93019 0.90054 0.96723 0.91451 0.92283 0.94137 0.94614 0.93405 0.92558 0.91320 0.88895 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.76 71.98 0.70 -0.74 16 2 C -0.10 -0.97 5.28 30.59 0.16 -0.81 16 3 C -0.09 -1.29 3.20 -9.67 -0.03 -1.32 16 4 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 5 C -0.14 -2.87 5.58 30.59 0.17 -2.70 16 6 C 0.50 17.29 8.02 87.90 0.71 17.99 16 7 O -0.59 -27.81 17.64 -3.03 -0.05 -27.87 16 8 N -0.61 -18.42 3.12 -828.67 -2.59 -21.01 16 9 C 0.29 10.89 5.65 170.81 0.96 11.86 16 10 N -0.55 -23.87 3.60 -913.16 -3.29 -27.16 16 11 C 0.22 11.80 4.77 85.56 0.41 12.21 16 12 C -0.50 -28.90 7.24 25.60 0.19 -28.71 16 13 H 0.08 4.34 4.95 -2.91 -0.01 4.33 16 14 C 0.00 -0.05 5.46 84.66 0.46 0.42 16 15 N -0.94 -57.99 13.29 21.45 0.28 -57.70 16 16 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 17 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 C 0.08 2.94 4.32 86.31 0.37 3.31 16 21 C -0.11 -3.91 2.41 -10.79 -0.03 -3.94 16 22 C -0.12 -4.04 8.45 71.98 0.61 -3.43 16 23 C -0.13 -3.66 9.19 71.98 0.66 -3.00 16 24 C 0.10 1.85 6.70 86.89 0.58 2.43 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.05 0.55 7.51 -2.38 -0.02 0.53 16 28 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.12 2.01 7.86 -2.39 -0.02 1.99 16 32 H 0.05 2.35 7.33 -2.39 -0.02 2.33 16 33 H 0.07 2.27 7.90 -2.38 -0.02 2.26 16 34 H -0.01 -0.80 7.51 -2.39 -0.02 -0.81 16 35 H -0.02 -1.44 7.69 -2.39 -0.02 -1.46 16 36 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.08 2.34 5.56 -2.39 -0.01 2.33 16 38 H 0.01 0.56 7.68 -2.39 -0.02 0.54 16 39 H 0.07 3.05 5.09 -2.39 -0.01 3.04 16 40 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.03 1.51 6.91 -2.38 -0.02 1.49 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.09 1.31 7.89 -2.39 -0.02 1.29 16 47 H 0.08 1.46 6.10 -2.39 -0.01 1.45 16 Total: -1.00 -75.19 362.35 3.23 -71.96 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.92 Total: 10.25 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 5.93 Total: 3.56 kcal Atomic # 7 Polarization: -100.28 SS G_CDS: -5.59 Total: -105.87 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -75.19 3.23 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755911643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.034 kcal (2) G-P(sol) polarization free energy of solvation -75.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds