Wall clock time and date at job start Tue Mar 31 2020 05:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46865 * 2 1 4 4 H 1.09004 * 110.85453 * 308.79141 * 3 2 1 5 5 C 1.54630 * 111.00021 * 72.60024 * 3 2 1 6 6 C 1.51283 * 104.19520 * 142.93095 * 5 3 2 7 7 O 1.21281 * 124.94590 * 163.78794 * 6 5 3 8 8 N 1.34423 * 110.11205 * 343.74741 * 6 5 3 9 9 C 1.46503 * 124.34825 * 179.59084 * 8 6 5 10 10 N 1.46900 * 109.47367 * 268.70553 * 9 8 6 11 11 C 1.46895 * 111.00401 * 153.78543 * 10 9 8 12 12 C 1.50694 * 109.47179 * 199.94515 * 11 10 9 13 13 H 1.07998 * 120.00509 * 4.50850 * 12 11 10 14 14 C 1.37880 * 120.00022 * 184.50856 * 12 11 10 15 15 N 1.31521 * 119.99838 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 120.00140 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47539 * 89.99783 * 16 14 12 18 18 H 1.48507 * 109.47205 * 209.99688 * 16 14 12 19 19 H 1.48504 * 109.47271 * 329.99448 * 16 14 12 20 20 C 1.46902 * 110.99499 * 277.74382 * 10 9 8 21 21 C 1.52999 * 109.47111 * 162.29302 * 20 10 9 22 22 C 1.52998 * 109.47478 * 179.78262 * 21 20 10 23 23 C 1.52999 * 109.46993 * 299.78186 * 21 20 10 24 24 C 1.46765 * 111.30257 * 359.59414 * 8 6 5 25 25 H 1.08997 * 109.47443 * 299.99811 * 1 2 3 26 26 H 1.09002 * 109.47036 * 60.00144 * 1 2 3 27 27 H 1.09006 * 109.46685 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47443 * 240.00189 * 2 1 3 29 29 H 1.09002 * 109.47036 * 119.99856 * 2 1 3 30 30 H 1.08995 * 110.49094 * 261.60997 * 5 3 2 31 31 H 1.09006 * 110.48519 * 24.12081 * 5 3 2 32 32 H 1.09004 * 109.46941 * 28.70489 * 9 8 6 33 33 H 1.08992 * 109.47214 * 148.70034 * 9 8 6 34 34 H 1.09000 * 109.47270 * 319.95126 * 11 10 9 35 35 H 1.09004 * 109.46987 * 79.94719 * 11 10 9 36 36 H 0.97001 * 119.99722 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47063 * 282.29045 * 20 10 9 38 38 H 1.08996 * 109.47792 * 42.29113 * 20 10 9 39 39 H 1.09003 * 109.47223 * 59.78011 * 21 20 10 40 40 H 1.09003 * 109.47098 * 59.99673 * 22 21 20 41 41 H 1.09000 * 109.47430 * 179.97438 * 22 21 20 42 42 H 1.08997 * 109.47014 * 300.00030 * 22 21 20 43 43 H 1.09002 * 109.47018 * 64.79611 * 23 21 20 44 44 H 1.09004 * 109.47273 * 184.79674 * 23 21 20 45 45 H 1.08998 * 109.47521 * 304.79953 * 23 21 20 46 46 H 1.09003 * 110.24375 * 258.01419 * 24 8 6 47 47 H 1.09002 * 110.24582 * 136.01454 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5676 2.0211 -0.7940 5 6 1.8176 2.1089 1.3775 6 6 3.0420 2.9759 1.5722 7 8 3.1370 3.8716 2.3843 8 7 4.0098 2.6083 0.7147 9 6 5.3254 3.2471 0.6298 10 7 5.2802 4.3318 -0.3598 11 6 6.2881 5.3583 -0.0623 12 6 5.9149 6.6440 -0.7540 13 1 4.9826 6.7157 -1.2943 14 6 6.7638 7.7290 -0.6970 15 7 7.8990 7.6420 -0.0386 16 14 6.3009 9.3231 -1.5538 17 1 5.5377 10.1855 -0.6163 18 1 7.5340 10.0299 -1.9842 19 1 5.4631 9.0212 -2.7422 20 6 5.4478 3.8086 -1.7222 21 6 4.9660 4.8521 -2.7321 22 6 5.1455 4.3094 -4.1513 23 6 3.4868 5.1555 -2.4854 24 6 3.5790 1.4848 -0.1257 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.9155 2.7204 1.3645 31 1 1.7541 1.3535 2.1609 32 1 5.5947 3.6551 1.6041 33 1 6.0686 2.5096 0.3269 34 1 6.3312 5.5240 1.0142 35 1 7.2629 5.0241 -0.4177 36 1 8.4963 8.4052 0.0011 37 1 6.5006 3.5896 -1.9004 38 1 4.8627 2.8961 -1.8356 39 1 5.5486 5.7661 -2.6162 40 1 4.5629 3.3955 -4.2672 41 1 4.8018 5.0527 -4.8707 42 1 6.1992 4.0933 -4.3270 43 1 3.3697 5.6211 -1.5068 44 1 3.1215 5.8338 -3.2566 45 1 2.9153 4.2279 -2.5171 46 1 4.0129 0.5535 0.2382 47 1 3.8682 1.6567 -1.1625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755911645.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:22 Heat of formation + Delta-G solvation = -40.036450 kcal Electronic energy + Delta-G solvation = -23926.239719 eV Core-core repulsion = 20722.669493 eV Total energy + Delta-G solvation = -3203.570226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.21398 -37.42000 -36.56843 -34.43642 -33.26632 -32.33369 -30.01467 -27.63081 -27.23626 -26.44472 -25.81900 -23.61881 -23.15269 -20.96446 -20.56886 -19.16915 -19.01626 -16.77780 -16.38632 -15.92691 -15.44866 -14.80315 -14.61946 -14.40319 -14.04803 -13.80807 -13.64353 -13.42482 -13.15990 -12.84567 -12.72778 -12.42518 -12.25660 -12.13478 -11.78477 -11.64725 -11.62999 -11.29956 -11.10913 -11.02600 -10.89582 -10.79412 -10.60963 -10.49777 -10.20409 -10.11676 -9.98995 -9.52998 -9.34874 -9.06104 -8.41846 -8.33806 -7.29140 -5.98983 -3.96981 2.96964 3.34652 3.39736 3.41058 3.44278 4.36580 4.45437 4.46040 4.57405 4.92085 5.02158 5.11229 5.18124 5.30453 5.34089 5.42355 5.51884 5.53181 5.60155 5.65798 5.73327 5.75813 5.78045 5.86220 5.93408 5.99358 6.02439 6.10246 6.15518 6.25148 6.28651 6.42670 6.52179 6.67616 6.79151 6.87449 7.17312 7.23226 7.30582 7.45684 7.53582 7.88622 8.12577 8.20384 8.52236 8.63846 9.08569 9.63946 11.11448 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.004920 C = 0.004488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.837714 B = 5689.799937 C = 6237.283328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.100 4.100 4 H 0.090 0.910 5 C -0.149 4.149 6 C 0.520 3.480 7 O -0.527 6.527 8 N -0.605 5.605 9 C 0.290 3.710 10 N -0.545 5.545 11 C 0.197 3.803 12 C -0.502 4.502 13 H 0.078 0.922 14 C 0.054 3.946 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.272 1.272 20 C 0.079 3.921 21 C -0.111 4.111 22 C -0.142 4.142 23 C -0.125 4.125 24 C 0.104 3.896 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.026 0.974 35 H -0.001 1.001 36 H 0.260 0.740 37 H 0.023 0.977 38 H 0.047 0.953 39 H 0.118 0.882 40 H 0.039 0.961 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.031 0.969 46 H 0.066 0.934 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.584 -16.446 -3.451 19.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.119 4.119 4 H 0.108 0.892 5 C -0.190 4.190 6 C 0.307 3.693 7 O -0.403 6.403 8 N -0.340 5.340 9 C 0.078 3.922 10 N -0.271 5.271 11 C 0.073 3.927 12 C -0.541 4.541 13 H 0.096 0.904 14 C -0.147 4.147 15 N -0.539 5.539 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.049 4.049 21 C -0.129 4.129 22 C -0.200 4.200 23 C -0.182 4.182 24 C -0.020 4.020 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.016 0.984 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.136 0.864 40 H 0.058 0.942 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.728 -15.599 -2.929 19.157 hybrid contribution 0.679 0.504 -0.611 1.043 sum -10.049 -15.094 -3.539 18.476 Atomic orbital electron populations 1.21775 0.95498 1.01567 1.02189 1.21511 0.96195 0.94881 1.02362 1.22201 0.95016 0.97074 0.97575 0.89151 1.22431 0.98352 1.00001 0.98186 1.20737 0.84975 0.83156 0.80431 1.90736 1.81653 1.30906 1.36987 1.48462 1.15719 1.33081 1.36778 1.21749 0.81119 0.91123 0.98165 1.61780 1.53378 1.11436 1.00519 1.19761 0.87245 0.88797 0.96946 1.21386 1.05238 0.95454 1.31996 0.90373 1.24996 0.95086 0.98762 0.95854 1.69962 1.10603 1.30969 1.42332 0.86587 0.77752 0.83737 0.79934 1.20680 1.21434 1.19724 1.22037 0.97400 0.95955 0.89551 1.21556 0.97981 1.01701 0.91691 1.21832 1.00524 0.99900 0.97782 1.21604 0.95324 0.99278 1.01989 1.22184 0.94175 0.89499 0.96133 0.92465 0.92578 0.92776 0.91467 0.91604 0.88546 0.88404 0.89195 0.93796 0.95572 0.98361 0.93031 0.95925 0.93452 0.86410 0.94157 0.93344 0.93458 0.90986 0.94793 0.95037 0.91626 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.81 37.16 0.36 -0.64 16 2 C -0.11 -0.78 5.29 -26.73 -0.14 -0.93 16 3 C -0.10 -0.95 3.12 -88.99 -0.28 -1.23 16 4 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.73 5.89 -26.74 -0.16 -1.88 16 6 C 0.52 8.90 8.02 -10.86 -0.09 8.81 16 7 O -0.53 -11.69 17.57 5.56 0.10 -11.59 16 8 N -0.61 -9.52 3.15 -175.91 -0.55 -10.07 16 9 C 0.29 5.30 5.75 -63.31 -0.36 4.94 16 10 N -0.54 -11.43 3.89 -239.99 -0.93 -12.36 16 11 C 0.20 5.05 4.76 -4.98 -0.02 5.02 16 12 C -0.50 -13.69 6.95 -34.44 -0.24 -13.93 16 13 H 0.08 2.09 4.49 -52.49 -0.24 1.86 16 14 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 C 0.08 1.45 4.27 -3.82 -0.02 1.43 16 21 C -0.11 -2.08 2.40 -90.62 -0.22 -2.29 16 22 C -0.14 -2.19 9.19 37.16 0.34 -1.85 16 23 C -0.12 -2.26 8.41 37.16 0.31 -1.95 16 24 C 0.10 1.17 6.71 -3.13 -0.02 1.15 16 25 H 0.06 0.38 7.74 -51.93 -0.40 -0.02 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.44 7.93 -51.93 -0.41 0.03 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.10 0.96 7.76 -51.93 -0.40 0.55 16 32 H 0.09 1.83 7.22 -51.93 -0.37 1.46 16 33 H 0.04 0.72 7.90 -51.93 -0.41 0.31 16 34 H 0.03 0.74 7.53 -51.93 -0.39 0.34 16 35 H 0.00 -0.04 7.76 -51.93 -0.40 -0.44 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.02 0.43 7.77 -51.93 -0.40 0.03 16 38 H 0.05 0.76 5.32 -51.93 -0.28 0.48 16 39 H 0.12 2.67 4.92 -51.93 -0.26 2.41 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 1.53 6.70 -51.93 -0.35 1.18 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.62 7.89 -51.93 -0.41 0.21 16 47 H 0.08 0.88 5.79 -51.93 -0.30 0.58 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -31.66 361.22 -9.24 -40.90 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.39 Total: -1.21 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -0.62 Total: -1.93 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.75 Total: -48.30 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.10 Total: -11.59 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.66 -9.24 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755911645.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.862 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds