Wall clock time and date at job start Tue Mar 31 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47184 * 180.02562 * 18 17 16 20 20 N 1.46902 * 109.47061 * 180.02562 * 19 18 17 21 21 C 1.48534 * 111.00112 * 52.60349 * 20 19 18 22 22 C 1.54939 * 103.22407 * 159.72209 * 21 20 19 23 23 C 1.54591 * 102.92234 * 322.58224 * 22 21 20 24 24 C 1.47904 * 110.99570 * 169.99844 * 20 19 18 25 25 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 27 27 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 35 35 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 36 36 H 1.08999 * 109.47231 * 300.00286 * 18 17 16 37 37 H 1.09004 * 109.47104 * 60.00186 * 18 17 16 38 38 H 1.08999 * 109.46961 * 300.00073 * 19 18 17 39 39 H 1.08998 * 109.46836 * 59.99842 * 19 18 17 40 40 H 1.09004 * 110.66192 * 278.15328 * 21 20 19 41 41 H 1.08996 * 110.66680 * 41.28231 * 21 20 19 42 42 H 1.09003 * 110.71654 * 204.22822 * 22 21 20 43 43 H 1.08997 * 110.72630 * 80.94430 * 22 21 20 44 44 H 1.09005 * 110.30957 * 263.04382 * 23 22 21 45 45 H 1.08996 * 110.31014 * 140.87721 * 23 22 21 46 46 H 1.08995 * 109.92036 * 333.50684 * 24 20 19 47 47 H 1.08997 * 109.91592 * 94.60865 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7521 4.5662 3.8733 19 6 -3.1722 5.1230 3.7546 20 7 -3.5490 5.7763 5.0152 21 6 -2.5276 6.7743 5.4237 22 6 -3.3005 7.6914 6.4046 23 6 -4.7056 7.7749 5.7654 24 6 -4.8122 6.5307 4.8642 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -1.3974 4.6138 1.7493 35 1 -2.0528 3.0720 2.3506 36 1 -1.7139 3.8391 4.6845 37 1 -1.0584 5.3806 4.0825 38 1 -3.2107 5.8500 2.9434 39 1 -3.8655 4.3083 3.5456 40 1 -1.6938 6.2867 5.9289 41 1 -2.1776 7.3416 4.5613 42 1 -2.8400 8.6781 6.4540 43 1 -3.3535 7.2392 7.3949 44 1 -4.7967 8.6828 5.1691 45 1 -5.4746 7.7498 6.5375 46 1 -4.9414 6.8345 3.8255 47 1 -5.6535 5.9127 5.1776 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762719346.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:52 Heat of formation + Delta-G solvation = -62.393909 kcal Electronic energy + Delta-G solvation = -22261.295702 eV Core-core repulsion = 19056.755984 eV Total energy + Delta-G solvation = -3204.539718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.41478 -39.08642 -35.68304 -34.81738 -32.46210 -32.16432 -31.28860 -29.31308 -28.41157 -27.00745 -24.10197 -22.38792 -21.97504 -21.10512 -20.47855 -20.17419 -19.45143 -17.73608 -16.46177 -16.17028 -16.04089 -15.84692 -15.31306 -14.80326 -14.28082 -14.00361 -13.51368 -13.37008 -13.07622 -13.01026 -12.70148 -12.48644 -12.42784 -12.02122 -11.97224 -11.72957 -11.66976 -11.48415 -11.28772 -11.09654 -11.01712 -10.88169 -10.85356 -10.66277 -10.53742 -10.41877 -9.87646 -9.56440 -9.12611 -8.98172 -8.69296 -8.33392 -8.03434 -6.57316 -4.21235 3.32636 3.39301 3.44719 3.59721 3.67499 4.07258 4.32765 4.37784 4.42238 4.62342 4.84395 4.89295 4.96156 5.13022 5.17169 5.18756 5.26785 5.33335 5.40296 5.45889 5.47850 5.49965 5.64822 5.68242 5.69491 5.81878 5.83746 5.89304 5.92331 6.09455 6.11682 6.25890 6.30483 6.39111 6.61034 6.71882 6.78248 6.81284 6.98736 7.07844 7.38796 7.46216 7.68613 8.23949 8.53521 8.72577 9.05227 9.47954 10.83154 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037387 B = 0.002651 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.751615 B =10560.148470 C =10835.160635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.040 0.960 5 C -0.616 4.616 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.899 5.899 9 Si 1.041 2.959 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.281 1.281 13 N -0.704 5.704 14 C 0.499 3.501 15 O -0.554 6.554 16 C -0.141 4.141 17 C -0.100 4.100 18 C -0.119 4.119 19 C 0.047 3.953 20 N -0.520 5.520 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.034 3.966 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.268 0.732 31 H 0.392 0.608 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.911 11.146 14.289 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.142 3.858 4 H 0.058 0.942 5 C -0.654 4.654 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.533 5.533 9 Si 0.869 3.131 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.352 5.352 14 C 0.284 3.716 15 O -0.433 6.433 16 C -0.181 4.181 17 C -0.138 4.138 18 C -0.157 4.157 19 C -0.081 4.081 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.094 4.094 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.224 0.776 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.426 10.166 12.408 23.685 hybrid contribution 0.469 1.152 1.376 1.855 sum -16.957 11.318 13.784 24.609 Atomic orbital electron populations 1.21877 0.97388 0.98770 1.01955 1.22356 0.93805 0.99870 1.01749 1.19019 0.95680 0.88537 0.82515 0.94210 1.22109 0.89828 1.49386 1.04067 0.92135 1.25687 0.97552 0.92384 1.01229 1.70874 1.07081 1.41020 1.34290 0.84102 0.75471 0.77698 0.75837 1.20968 1.19500 1.20665 1.46278 1.14817 1.56139 1.17967 1.20529 0.82465 0.79113 0.89455 1.90646 1.50946 1.60120 1.41590 1.21669 0.98514 1.01125 0.96833 1.21249 0.95237 1.00620 0.96718 1.21678 0.95143 1.00429 0.98416 1.22337 0.97504 0.98629 0.89671 1.64824 1.02507 1.26998 1.30063 1.23258 0.95621 0.92868 0.97791 1.22495 0.95080 0.99436 0.99327 1.22400 0.97926 0.97560 0.99103 1.22878 0.93682 0.94341 0.98541 0.95173 0.93253 0.93085 0.91391 0.93165 0.92157 0.77551 0.89556 0.89630 0.91416 0.91165 0.91112 0.91973 0.94586 0.90449 0.89819 0.93655 0.91133 0.90745 0.91605 0.91053 0.93773 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.53 37.15 0.32 -2.60 16 2 C -0.14 -3.14 5.28 -26.73 -0.14 -3.28 16 3 C 0.25 5.91 1.82 -69.08 -0.13 5.78 16 4 H 0.04 1.05 6.26 -51.93 -0.32 0.72 16 5 C -0.62 -16.72 9.01 -34.44 -0.31 -17.03 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.30 16 7 C 0.04 1.07 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.90 13.69 55.43 0.76 -26.14 16 9 Si 1.04 25.31 26.27 -169.99 -4.47 20.84 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.12 5.67 56.52 0.32 -5.80 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.70 -14.11 5.03 -54.94 -0.28 -14.39 16 14 C 0.50 9.23 6.42 -10.99 -0.07 9.16 16 15 O -0.55 -12.00 13.12 5.56 0.07 -11.93 16 16 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 17 C -0.10 -1.23 4.50 -26.73 -0.12 -1.35 16 18 C -0.12 -1.18 4.87 -26.73 -0.13 -1.31 16 19 C 0.05 0.46 5.03 -3.82 -0.02 0.44 16 20 N -0.52 -4.95 5.40 -230.45 -1.24 -6.20 16 21 C 0.03 0.27 5.10 -1.90 -0.01 0.26 16 22 C -0.13 -0.87 7.06 -24.87 -0.18 -1.04 16 23 C -0.13 -0.89 6.93 -25.38 -0.18 -1.07 16 24 C 0.03 0.27 6.70 -2.75 -0.02 0.26 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.99 5.63 -51.92 -0.29 0.70 16 27 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 28 H 0.07 1.61 4.74 -51.92 -0.25 1.36 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.27 7.93 8.73 -40.82 -0.36 7.58 16 31 H 0.39 7.01 8.53 -40.82 -0.35 6.66 16 32 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.59 6.79 -51.93 -0.35 0.23 16 38 H 0.04 0.36 7.81 -51.93 -0.41 -0.04 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 41 H 0.05 0.39 8.00 -51.93 -0.42 -0.03 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.04 0.36 7.57 -51.93 -0.39 -0.03 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -30.83 358.97 -9.71 -40.54 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.73 Total: 4.70 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.23 Total: -12.83 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.76 Total: -46.72 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.07 Total: -11.93 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -4.47 Total: 20.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.83 -9.71 -40.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719346.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.858 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds