Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31515 * 119.99867 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00050 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47175 * 60.00893 * 9 7 5 11 11 H 1.48504 * 109.47307 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47672 * 300.00505 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.52994 * 109.47118 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46834 * 179.97438 * 18 17 16 20 20 N 1.46910 * 109.46821 * 179.97438 * 19 18 17 21 21 C 1.48527 * 110.99950 * 52.60554 * 20 19 18 22 22 C 1.54941 * 103.22691 * 159.71807 * 21 20 19 23 23 C 1.54592 * 102.91987 * 322.58917 * 22 21 20 24 24 C 1.47897 * 110.99719 * 170.00502 * 20 19 18 25 25 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 27 27 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 28 28 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 29 29 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 30 30 H 0.96999 * 119.99893 * 179.97438 * 8 7 5 31 31 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 32 32 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 33 33 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 34 34 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 35 35 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 36 36 H 1.08998 * 109.46965 * 299.99512 * 18 17 16 37 37 H 1.09003 * 109.47184 * 60.00331 * 18 17 16 38 38 H 1.08990 * 109.47421 * 299.99996 * 19 18 17 39 39 H 1.09002 * 109.47073 * 60.00711 * 19 18 17 40 40 H 1.08996 * 110.67167 * 278.15464 * 21 20 19 41 41 H 1.09007 * 110.66464 * 41.28538 * 21 20 19 42 42 H 1.08999 * 110.72365 * 204.22732 * 22 21 20 43 43 H 1.08999 * 110.72113 * 80.94855 * 22 21 20 44 44 H 1.09009 * 110.30709 * 263.03784 * 23 22 21 45 45 H 1.08998 * 110.30825 * 140.87175 * 23 22 21 46 46 H 1.09005 * 109.91999 * 333.50757 * 24 20 19 47 47 H 1.09001 * 109.92116 * 94.60800 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3366 2.1728 9 14 6.0050 0.8799 1.3809 10 1 6.5005 2.2798 1.3807 11 1 6.3980 0.2155 2.6496 12 1 6.5967 0.1452 0.2341 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7939 4.5634 -3.8341 19 6 -3.2152 5.1143 -3.7025 20 7 -3.6057 5.7669 -4.9594 21 6 -3.4012 4.8586 -6.1166 22 6 -4.3169 5.4652 -7.2095 23 6 -5.5491 5.9382 -6.4047 24 6 -5.0466 6.1003 -4.9580 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8294 -0.0619 2.9494 31 1 2.2719 2.1232 -1.9977 32 1 0.7225 4.1501 -2.8716 33 1 0.0680 2.6061 -3.4682 34 1 -2.0754 3.0670 -2.3098 35 1 -1.4210 4.6110 -1.7131 36 1 -1.1055 5.3807 -4.0486 37 1 -1.7600 3.8370 -4.6460 38 1 -3.9034 4.2968 -3.4881 39 1 -3.2496 5.8407 -2.8905 40 1 -2.3594 4.8718 -6.4367 41 1 -3.7162 3.8446 -5.8701 42 1 -4.6006 4.7070 -7.9394 43 1 -3.8282 6.3083 -7.6978 44 1 -6.3400 5.1893 -6.4488 45 1 -5.9087 6.8925 -6.7894 46 1 -5.5849 5.4186 -4.2994 47 1 -5.1897 7.1283 -4.6252 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762719348.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = -62.642640 kcal Electronic energy + Delta-G solvation = -22188.956561 eV Core-core repulsion = 18984.406057 eV Total energy + Delta-G solvation = -3204.550504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.32840 -38.92842 -35.51782 -34.68117 -32.38201 -32.03832 -30.84009 -29.26966 -28.30995 -26.78702 -24.10327 -22.90861 -21.89357 -21.05299 -20.39746 -19.97346 -19.22672 -17.00805 -16.35051 -16.11999 -15.78895 -15.50261 -15.19316 -14.69117 -14.29785 -14.18552 -13.52956 -13.31980 -13.04719 -12.87867 -12.67814 -12.34475 -12.02034 -11.81224 -11.69057 -11.46479 -11.44507 -11.27506 -11.16940 -11.05189 -10.95805 -10.92842 -10.82233 -10.79307 -10.47018 -10.30702 -10.12259 -9.60601 -9.03236 -8.87157 -8.65095 -8.47127 -7.75675 -6.10324 -4.19734 3.26266 3.31605 3.32718 3.51073 3.72361 4.17035 4.34333 4.40298 4.44508 4.65931 4.91120 4.95718 4.99667 5.19425 5.20627 5.26094 5.33112 5.39592 5.46058 5.50671 5.52716 5.56640 5.68216 5.72849 5.77754 5.87092 5.89748 5.97032 6.02743 6.34259 6.41088 6.46638 6.49203 6.65312 6.68790 6.82673 7.06345 7.22676 7.40299 7.52095 7.64570 7.77250 7.93666 8.21201 8.73908 8.81352 9.22371 9.48202 10.94937 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039732 B = 0.002515 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.546793 B =11132.652100 C =11416.695770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.498 3.502 15 O -0.552 6.552 16 C -0.141 4.141 17 C -0.100 4.100 18 C -0.118 4.118 19 C 0.046 3.954 20 N -0.519 5.519 21 C 0.032 3.968 22 C -0.125 4.125 23 C -0.132 4.132 24 C 0.033 3.967 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.038 0.962 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.044 0.956 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.202 8.241 -16.721 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.359 5.359 14 C 0.283 3.717 15 O -0.431 6.431 16 C -0.182 4.182 17 C -0.138 4.138 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.244 5.244 21 C -0.095 4.095 22 C -0.163 4.163 23 C -0.170 4.170 24 C -0.095 4.095 25 H 0.040 0.960 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.219 0.781 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.062 0.938 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.406 8.574 -15.863 22.470 hybrid contribution 0.854 -0.829 -0.098 1.195 sum -12.552 7.745 -15.961 21.732 Atomic orbital electron populations 1.21833 0.98393 0.97900 1.01229 1.21929 0.92581 0.99927 1.02168 1.18746 0.94070 0.89142 0.81274 0.93438 1.21213 0.90832 1.38969 1.06226 0.92203 1.24892 0.98571 0.94860 0.95415 1.69888 1.35179 1.37590 1.09359 0.86521 0.84930 0.78290 0.77418 1.20201 1.21155 1.20194 1.46516 1.14889 1.56120 1.18414 1.20447 0.82631 0.79268 0.89328 1.90656 1.51514 1.60019 1.40941 1.21675 0.98385 1.01061 0.97059 1.21244 0.95235 1.00540 0.96805 1.21678 0.95725 1.00123 0.98100 1.22347 0.96559 0.97296 0.91968 1.64826 1.17058 1.39382 1.03107 1.23255 1.00582 0.94691 0.90995 1.22495 0.95745 1.00745 0.97354 1.22400 0.97945 1.01682 0.94958 1.22879 0.88367 1.01572 0.96640 0.95980 0.93200 0.94276 0.95145 0.88374 0.92546 0.78077 0.89637 0.89878 0.91491 0.91155 0.91117 0.92054 0.94586 0.90429 0.89822 0.93676 0.91163 0.90758 0.91624 0.91073 0.93772 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.27 16 9 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -14.69 5.02 -54.93 -0.28 -14.97 16 14 C 0.50 9.67 6.40 -10.98 -0.07 9.60 16 15 O -0.55 -12.73 13.12 5.55 0.07 -12.66 16 16 C -0.14 -1.95 5.70 -27.88 -0.16 -2.11 16 17 C -0.10 -1.30 4.50 -26.74 -0.12 -1.42 16 18 C -0.12 -1.23 4.87 -26.73 -0.13 -1.36 16 19 C 0.05 0.48 5.03 -3.82 -0.02 0.46 16 20 N -0.52 -5.11 5.40 -230.45 -1.24 -6.35 16 21 C 0.03 0.28 5.10 -1.90 -0.01 0.27 16 22 C -0.13 -0.89 7.06 -24.87 -0.18 -1.06 16 23 C -0.13 -0.92 6.93 -25.38 -0.18 -1.09 16 24 C 0.03 0.28 6.70 -2.76 -0.02 0.26 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.20 7.85 -51.93 -0.41 0.80 16 27 H 0.04 0.85 5.64 -51.93 -0.29 0.56 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.39 6.94 8.54 -40.82 -0.35 6.59 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.60 6.80 -51.93 -0.35 0.24 16 38 H 0.04 0.38 7.81 -51.93 -0.41 -0.03 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 41 H 0.04 0.39 8.00 -51.92 -0.42 -0.02 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.04 0.37 7.57 -51.93 -0.39 -0.02 16 47 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 363.41 15.07 5.48 5.48 Total: -1.00 -29.93 363.41 -10.37 -40.31 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.75 Total: 5.40 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.26 Total: -8.61 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.89 Total: -45.59 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.07 Total: -12.66 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.93 -10.37 -40.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762719348.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.336 kcal (2) G-P(sol) polarization free energy of solvation -29.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds