Wall clock time and date at job start Tue Mar 31 2020 06:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47204 * 2 1 4 4 N 1.46897 * 109.47110 * 120.00489 * 2 1 3 5 5 C 1.47449 * 111.00112 * 176.72939 * 4 2 1 6 6 C 1.54315 * 107.23601 * 236.74325 * 5 4 2 7 7 C 1.55142 * 103.17450 * 337.62764 * 6 5 4 8 8 C 1.47843 * 111.00161 * 55.88993 * 4 2 1 9 9 H 1.09003 * 110.37725 * 27.41825 * 8 4 2 10 10 C 1.50708 * 110.37233 * 265.19010 * 8 4 2 11 11 O 1.21277 * 119.99784 * 359.97438 * 10 8 4 12 12 N 1.34775 * 120.00060 * 180.02562 * 10 8 4 13 13 C 1.46497 * 120.00108 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47276 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47107 * 300.00004 * 14 13 12 16 16 C 1.52999 * 109.47136 * 59.99645 * 14 13 12 17 17 C 1.50697 * 109.47059 * 179.97438 * 14 13 12 18 18 H 1.07999 * 120.00328 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99924 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00018 * 0.02562 * 19 17 14 21 21 Si 1.86802 * 120.00230 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.47039 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46883 * 120.00046 * 21 19 17 24 24 H 1.48492 * 109.47632 * 240.00006 * 21 19 17 25 25 H 1.09009 * 109.47104 * 295.56910 * 1 2 3 26 26 H 1.08998 * 109.47581 * 55.56783 * 1 2 3 27 27 H 1.09000 * 109.47266 * 175.57119 * 1 2 3 28 28 H 1.09001 * 109.46775 * 240.00381 * 2 1 3 29 29 H 1.08998 * 109.47047 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47046 * 300.00511 * 3 2 1 31 31 H 1.09001 * 109.46943 * 60.00484 * 3 2 1 32 32 H 1.09001 * 109.88568 * 117.32857 * 5 4 2 33 33 H 1.09005 * 109.88459 * 356.14801 * 5 4 2 34 34 H 1.08995 * 110.70476 * 96.09853 * 6 5 4 35 35 H 1.09002 * 110.70483 * 219.16030 * 6 5 4 36 36 H 1.09001 * 110.99005 * 153.83510 * 7 6 5 37 37 H 1.08999 * 110.98594 * 277.64842 * 7 6 5 38 38 H 0.97004 * 119.99527 * 359.97438 * 12 10 8 39 39 H 1.09006 * 109.46832 * 299.99615 * 13 12 10 40 40 H 1.08997 * 109.47166 * 59.99365 * 13 12 10 41 41 H 1.08993 * 109.47352 * 59.99791 * 15 14 13 42 42 H 1.09001 * 109.47305 * 180.02562 * 15 14 13 43 43 H 1.09005 * 109.47293 * 299.99565 * 15 14 13 44 44 H 1.09006 * 109.47198 * 60.00140 * 16 14 13 45 45 H 1.09000 * 109.47608 * 179.97438 * 16 14 13 46 46 H 1.08999 * 109.47529 * 300.00151 * 16 14 13 47 47 H 0.97008 * 120.00195 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1993 5 6 3.4915 -0.7807 1.1948 6 6 3.8605 -2.2749 1.3062 7 6 2.5931 -2.9057 1.9408 8 6 1.4665 -2.0610 1.2839 9 1 1.2377 -2.4401 0.2879 10 6 0.2306 -2.0750 2.1462 11 8 -0.1671 -1.0473 2.6526 12 7 -0.4322 -3.2297 2.3554 13 6 -1.6339 -3.2432 3.1931 14 6 -2.1885 -4.6673 3.2666 15 6 -2.5429 -5.1498 1.8586 16 6 -1.1335 -5.5948 3.8730 17 6 -3.4243 -4.6812 4.1289 18 1 -3.7785 -3.7660 4.5798 19 6 -4.1028 -5.8624 4.3421 20 7 -3.6712 -6.9769 3.7935 21 14 -5.6343 -5.8798 5.4116 22 1 -5.9077 -4.5069 5.9072 23 1 -6.7912 -6.3563 4.6116 24 1 -5.4220 -6.7900 6.5655 25 1 -0.3634 0.4436 0.9271 26 1 -0.3634 0.5810 -0.8476 27 1 -0.3634 -1.0246 -0.0794 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.8982 -0.2337 2.0454 33 1 3.8846 -0.3699 0.2648 34 1 4.0500 -2.6995 0.3204 35 1 4.7252 -2.4109 1.9558 36 1 2.5041 -3.9582 1.6713 37 1 2.5949 -2.7803 3.0235 38 1 -0.1138 -4.0518 1.9506 39 1 -1.3814 -2.8991 4.1962 40 1 -2.3855 -2.5828 2.7609 41 1 -1.6488 -5.1398 1.2353 42 1 -2.9384 -6.1641 1.9110 43 1 -3.2945 -4.4891 1.4265 44 1 -0.8810 -5.2510 4.8762 45 1 -1.5287 -6.6092 3.9258 46 1 -0.2394 -5.5848 3.2497 47 1 -4.1484 -7.8081 3.9438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822399842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:04 Heat of formation + Delta-G solvation = -42.887653 kcal Electronic energy + Delta-G solvation = -23743.924504 eV Core-core repulsion = 20540.230641 eV Total energy + Delta-G solvation = -3203.693863 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.16366 -38.10324 -36.14847 -34.53206 -33.12103 -30.97047 -29.66172 -29.24361 -26.89016 -25.70921 -25.57526 -24.88137 -22.72311 -21.39770 -20.29252 -19.44758 -18.71076 -17.20472 -16.47750 -15.81964 -15.13955 -15.02697 -14.67748 -14.43570 -14.29895 -13.63070 -13.38240 -13.28181 -12.90596 -12.67561 -12.49407 -12.33935 -12.13648 -11.94855 -11.63198 -11.40083 -11.29058 -11.24193 -11.16594 -11.04346 -10.86794 -10.83370 -10.79296 -10.64229 -10.35577 -10.18328 -9.60776 -9.39990 -9.11521 -8.75578 -8.40954 -8.26186 -8.20834 -6.00721 -4.10417 3.19610 3.28104 3.36659 3.40819 3.48275 4.17859 4.41733 4.50231 4.55746 4.79126 4.98303 5.03565 5.11974 5.25434 5.26167 5.30947 5.38770 5.55728 5.66039 5.68035 5.72982 5.80342 5.85498 5.89204 5.95237 6.09539 6.20858 6.28771 6.37881 6.50631 6.53797 6.83227 6.84416 6.86850 6.99125 7.04473 7.10822 7.13889 7.39254 7.57569 7.71298 8.02904 8.12682 8.24803 8.41361 8.86839 8.92898 9.55387 11.00635 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030011 B = 0.003880 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.757199 B = 7215.245730 C = 7679.698932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.077 3.923 3 C -0.142 4.142 4 N -0.501 5.501 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.119 4.119 8 C 0.054 3.946 9 H 0.074 0.926 10 C 0.513 3.487 11 O -0.527 6.527 12 N -0.721 5.721 13 C 0.136 3.864 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.129 4.129 17 C -0.504 4.504 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 H 0.082 0.918 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.394 0.606 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.005 0.995 42 H 0.085 0.915 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.084 0.916 46 H 0.006 0.994 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.057 7.873 -8.692 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 C -0.199 4.199 4 N -0.226 5.226 5 C -0.084 4.084 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.058 4.058 9 H 0.092 0.908 10 C 0.297 3.703 11 O -0.403 6.403 12 N -0.373 5.373 13 C 0.013 3.987 14 C 0.054 3.946 15 C -0.187 4.187 16 C -0.187 4.187 17 C -0.542 4.542 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.101 0.899 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.229 0.771 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.024 0.976 42 H 0.103 0.897 43 H 0.045 0.955 44 H 0.045 0.955 45 H 0.103 0.897 46 H 0.025 0.975 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.525 8.747 -7.901 17.941 hybrid contribution -0.454 -0.994 -0.384 1.158 sum 13.071 7.753 -8.285 17.309 Atomic orbital electron populations 1.21979 0.93796 1.01760 1.03096 1.21765 0.96292 0.95091 0.89932 1.21843 1.00477 0.95327 1.02282 1.63209 1.05581 1.15004 1.38804 1.22852 0.87967 0.96068 1.01537 1.22789 0.98337 0.95729 1.01110 1.22762 0.92754 0.98854 1.01366 1.22588 0.94655 0.89966 0.98608 0.90805 1.20158 0.84225 0.83993 0.81892 1.90634 1.67469 1.32405 1.49776 1.46290 1.29311 1.09739 1.51977 1.21645 0.84060 1.00288 0.92714 1.18358 0.94128 0.88159 0.93911 1.21815 0.97099 1.03961 0.95849 1.21813 0.95473 1.04032 0.97380 1.21037 1.09160 0.94474 1.29571 0.92419 1.24879 0.97401 0.95546 0.95712 1.69817 1.39643 0.98878 1.44169 0.86531 0.83043 0.78130 0.80278 1.19754 1.21097 1.21079 0.89905 0.92816 0.93338 0.94710 0.92929 0.92431 0.91475 0.90379 0.92526 0.91397 0.90453 0.89979 0.89938 0.77098 0.92906 0.92976 0.97566 0.89664 0.95524 0.95493 0.89689 0.97528 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 7.92 37.16 0.29 -1.73 16 2 C 0.08 0.93 2.22 -67.72 -0.15 0.78 16 3 C -0.14 -1.45 9.12 37.16 0.34 -1.11 16 4 N -0.50 -6.62 4.26 -216.53 -0.92 -7.54 16 5 C 0.04 0.45 6.16 -2.83 -0.02 0.43 16 6 C -0.14 -1.28 6.93 -24.91 -0.17 -1.46 16 7 C -0.12 -1.34 6.50 -24.34 -0.16 -1.50 16 8 C 0.05 0.73 2.23 -67.08 -0.15 0.58 16 9 H 0.07 0.92 7.41 -51.93 -0.38 0.54 16 10 C 0.51 8.98 5.83 -10.98 -0.06 8.92 16 11 O -0.53 -11.11 14.49 5.56 0.08 -11.03 16 12 N -0.72 -12.86 4.94 -60.29 -0.30 -13.16 16 13 C 0.14 2.90 4.50 -4.04 -0.02 2.88 16 14 C 0.06 1.28 0.50 -155.67 -0.08 1.20 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 17 C -0.50 -13.24 8.01 -34.44 -0.28 -13.52 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 20 N -0.89 -23.60 9.35 55.43 0.52 -23.08 16 21 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.08 1.36 6.79 -51.92 -0.35 1.01 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.70 6.38 -51.93 -0.33 0.37 16 28 H 0.04 0.39 8.13 -51.93 -0.42 -0.04 16 29 H 0.05 0.47 6.70 -51.93 -0.35 0.13 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.04 8.06 -51.93 -0.42 0.63 16 38 H 0.39 6.37 6.16 -40.82 -0.25 6.12 16 39 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 42 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 46 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 47 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -28.52 352.81 -8.65 -37.18 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -8.38 Total: 4.66 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.06 Total: -8.11 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.70 Total: -43.77 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.52 -8.65 -37.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822399842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.712 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds