Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47014 * 2 1 4 4 N 1.46498 * 109.47061 * 240.00152 * 2 1 3 5 5 C 1.46494 * 120.00095 * 242.58188 * 4 2 1 6 6 C 1.53005 * 109.47109 * 90.00385 * 5 4 2 7 7 C 1.53003 * 117.49856 * 243.62275 * 6 5 4 8 8 C 1.52997 * 59.99926 * 252.50735 * 7 6 5 9 9 C 1.34776 * 120.00001 * 62.58664 * 4 2 1 10 10 O 1.21594 * 120.00085 * 354.80947 * 9 4 2 11 11 N 1.34777 * 120.00356 * 174.81731 * 9 4 2 12 12 C 1.46497 * 120.00177 * 185.47422 * 11 9 4 13 13 C 1.53004 * 109.47005 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46833 * 299.99781 * 13 12 11 15 15 C 1.52990 * 109.47270 * 60.00046 * 13 12 11 16 16 C 1.50700 * 109.46923 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00343 * 2.68404 * 16 13 12 18 18 C 1.37884 * 119.99979 * 182.68315 * 16 13 12 19 19 N 1.31504 * 120.00188 * 189.25361 * 18 16 13 20 20 Si 1.86804 * 119.99642 * 9.25201 * 18 16 13 21 21 H 1.48503 * 109.46961 * 92.56232 * 20 18 16 22 22 H 1.48496 * 109.46771 * 212.55845 * 20 18 16 23 23 H 1.48498 * 109.47258 * 332.55716 * 20 18 16 24 24 H 1.09002 * 109.47307 * 182.92252 * 1 2 3 25 25 H 1.08999 * 109.47265 * 302.91613 * 1 2 3 26 26 H 1.09005 * 109.47297 * 62.92403 * 1 2 3 27 27 H 1.08994 * 109.47112 * 120.00375 * 2 1 3 28 28 H 1.08996 * 109.47730 * 305.65667 * 3 2 1 29 29 H 1.09006 * 109.47172 * 65.65872 * 3 2 1 30 30 H 1.09004 * 109.47086 * 185.65098 * 3 2 1 31 31 H 1.08998 * 109.47609 * 209.99865 * 5 4 2 32 32 H 1.08997 * 109.47214 * 330.00442 * 5 4 2 33 33 H 1.09005 * 115.54994 * 29.32585 * 6 5 4 34 34 H 1.08996 * 117.49764 * 359.97438 * 7 6 5 35 35 H 1.09002 * 117.49724 * 145.01355 * 7 6 5 36 36 H 1.09002 * 117.49829 * 252.50747 * 8 7 6 37 37 H 1.08998 * 117.49925 * 107.49048 * 8 7 6 38 38 H 0.97006 * 119.99581 * 5.46630 * 11 9 4 39 39 H 1.08996 * 109.47152 * 299.99612 * 12 11 9 40 40 H 1.09003 * 109.47398 * 60.00102 * 12 11 9 41 41 H 1.09003 * 109.46765 * 70.81035 * 14 13 12 42 42 H 1.09004 * 109.46380 * 190.80326 * 14 13 12 43 43 H 1.08990 * 109.47462 * 310.79815 * 14 13 12 44 44 H 1.09004 * 109.47332 * 59.99950 * 15 13 12 45 45 H 1.09004 * 109.47521 * 179.97438 * 15 13 12 46 46 H 1.09004 * 109.47170 * 300.00229 * 15 13 12 47 47 H 0.96996 * 120.00228 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.8133 -1.9138 -1.0626 6 6 1.8828 -3.1283 -1.0537 7 6 1.8427 -3.9783 0.2179 8 6 2.5304 -4.5144 -1.0393 9 6 1.7363 -0.2005 -2.4196 10 8 0.9990 0.7596 -2.5348 11 7 2.2713 -0.7745 -3.5153 12 6 2.0628 -0.1714 -4.8341 13 6 2.7706 -1.0135 -5.8976 14 6 4.2689 -1.0665 -5.5921 15 6 2.1978 -2.4321 -5.8893 16 6 2.5566 -0.3927 -7.2540 17 1 2.0110 0.5349 -7.3434 18 6 3.0575 -1.0093 -8.3811 19 7 3.0326 -0.3848 -9.5382 20 14 3.7714 -2.7315 -8.2643 21 1 2.7107 -3.7281 -8.5596 22 1 4.8751 -2.8775 -9.2470 23 1 4.2958 -2.9581 -6.8936 24 1 -0.3634 -1.0263 0.0524 25 1 -0.3634 0.5584 0.8627 26 1 -0.3634 0.4678 -0.9151 27 1 1.8933 -0.5139 0.8899 28 1 1.5964 1.9848 -0.8349 29 1 1.7617 1.9263 0.9364 30 1 3.1253 1.4442 -0.1012 31 1 3.5042 -1.9917 -1.9020 32 1 3.3767 -1.8809 -0.1301 33 1 0.9535 -3.0127 -1.6116 34 1 2.4795 -3.6725 1.0479 35 1 0.8869 -4.4219 0.4968 36 1 2.0270 -5.3109 -1.5875 37 1 3.6193 -4.5611 -1.0362 38 1 2.7946 -1.5869 -3.4307 39 1 0.9954 -0.1333 -5.0514 40 1 2.4713 0.8391 -4.8402 41 1 4.4379 -1.6818 -4.7084 42 1 4.7978 -1.4980 -6.4420 43 1 4.6382 -0.0576 -5.4086 44 1 1.1304 -2.3943 -6.1068 45 1 2.7017 -3.0319 -6.6472 46 1 2.3529 -2.8808 -4.9080 47 1 3.3846 -0.8187 -10.3311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895302455.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = 10.476643 kcal Electronic energy + Delta-G solvation = -23959.561311 eV Core-core repulsion = 20758.181497 eV Total energy + Delta-G solvation = -3201.379814 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.27450 -37.71898 -37.01400 -35.38475 -33.64325 -32.02228 -30.99526 -27.08299 -26.90445 -26.36831 -25.76907 -24.76831 -22.62620 -22.10767 -20.93969 -19.49558 -19.01694 -17.59548 -16.31987 -16.06489 -15.52320 -15.37867 -15.10186 -14.36368 -14.34160 -14.06734 -13.50617 -13.26582 -13.02842 -13.00043 -12.87517 -12.52554 -12.16374 -12.03473 -12.02416 -11.96913 -11.83881 -11.72563 -11.28385 -11.08236 -11.04420 -10.63106 -10.39279 -10.23445 -10.17724 -10.13801 -10.04477 -9.43760 -9.05421 -8.69304 -8.61375 -8.50891 -8.21683 -6.11340 -4.10295 2.87889 3.25286 3.31718 3.38946 3.53384 3.61048 4.20803 4.37165 4.55444 4.67950 4.80038 4.94337 5.08630 5.17916 5.19997 5.25570 5.31891 5.42252 5.49277 5.68132 5.70238 5.72939 5.78239 5.88055 5.89508 6.00730 6.04534 6.07387 6.11624 6.30940 6.38881 6.43828 6.50454 6.57136 6.62961 6.74276 6.80228 6.87838 7.05659 7.21730 7.28126 7.45968 7.74781 8.33868 8.49795 8.92836 9.01597 9.51483 11.01846 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.005094 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.852287 B = 5495.234708 C = 6480.658944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.167 3.833 3 C -0.169 4.169 4 N -0.629 5.629 5 C 0.142 3.858 6 C -0.173 4.173 7 C -0.177 4.177 8 C -0.176 4.176 9 C 0.704 3.296 10 O -0.587 6.587 11 N -0.739 5.739 12 C 0.160 3.840 13 C 0.028 3.972 14 C -0.139 4.139 15 C -0.145 4.145 16 C -0.508 4.508 17 H 0.077 0.923 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.882 3.118 21 H -0.288 1.288 22 H -0.304 1.304 23 H -0.243 1.243 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.392 0.608 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.052 0.948 45 H 0.041 0.959 46 H 0.028 0.972 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 -6.386 21.081 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.064 3.936 3 C -0.227 4.227 4 N -0.367 5.367 5 C 0.018 3.982 6 C -0.192 4.192 7 C -0.214 4.214 8 C -0.213 4.213 9 C 0.405 3.595 10 O -0.466 6.466 11 N -0.395 5.395 12 C 0.037 3.963 13 C 0.027 3.973 14 C -0.197 4.197 15 C -0.202 4.202 16 C -0.546 4.546 17 H 0.095 0.905 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.714 3.286 21 H -0.216 1.216 22 H -0.233 1.233 23 H -0.169 1.169 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.228 0.772 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.032 -5.627 20.767 21.516 hybrid contribution 0.605 -1.559 -0.107 1.676 sum 0.574 -7.186 20.660 21.881 Atomic orbital electron populations 1.22241 0.95236 1.01630 1.03577 1.20745 0.94417 0.92801 0.85670 1.22234 1.01002 0.96475 1.02996 1.47276 1.57461 1.26990 1.04966 1.21058 0.92029 0.82493 1.02603 1.22922 1.02163 0.91921 1.02226 1.22998 1.02465 1.04245 0.91698 1.22950 1.00240 0.96665 1.01479 1.15960 0.80626 0.82707 0.80167 1.90829 1.40486 1.29950 1.85337 1.45690 1.56612 1.30405 1.06830 1.21350 1.00280 0.96341 0.78347 1.18731 0.91575 0.91971 0.95069 1.22295 0.98696 0.99840 0.98853 1.22346 1.01182 0.98411 0.98227 1.20743 1.36380 1.09588 0.87935 0.90522 1.24984 0.94950 0.97658 0.95268 1.69918 1.46300 1.37241 0.99773 0.87368 0.78463 0.85395 0.77365 1.21556 1.23296 1.16876 0.93182 0.92490 0.89884 0.90396 0.90017 0.92352 0.93027 0.90370 0.90305 0.87424 0.88863 0.89030 0.88647 0.88580 0.77226 0.92208 0.92309 0.96118 0.92668 0.93487 0.92888 0.94061 0.95278 0.92632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.20 37.16 0.34 -1.67 16 2 C 0.17 1.91 3.28 -67.93 -0.22 1.69 16 3 C -0.17 -2.01 8.99 37.16 0.33 -1.68 16 4 N -0.63 -8.11 2.42 -171.81 -0.42 -8.53 16 5 C 0.14 1.45 5.51 -4.04 -0.02 1.42 16 6 C -0.17 -1.69 6.01 -90.62 -0.54 -2.24 16 7 C -0.18 -1.41 10.18 -26.73 -0.27 -1.68 16 8 C -0.18 -1.49 10.25 -26.73 -0.27 -1.76 16 9 C 0.70 11.90 7.68 -86.92 -0.67 11.23 16 10 O -0.59 -11.83 12.62 5.28 0.07 -11.76 16 11 N -0.74 -12.56 4.87 -65.22 -0.32 -12.88 16 12 C 0.16 3.27 4.49 -4.04 -0.02 3.25 16 13 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 14 C -0.14 -2.84 7.42 37.16 0.28 -2.56 16 15 C -0.14 -2.96 7.50 37.15 0.28 -2.68 16 16 C -0.51 -13.71 8.62 -34.44 -0.30 -14.01 16 17 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 18 C 0.07 2.05 5.38 -17.82 -0.10 1.95 16 19 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 20 Si 0.88 21.02 22.80 -169.99 -3.88 17.14 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.24 -5.22 4.39 56.52 0.25 -4.97 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.08 1.27 6.11 -51.93 -0.32 0.95 16 27 H 0.08 0.71 7.78 -51.93 -0.40 0.30 16 28 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.82 6.25 -51.93 -0.32 0.49 16 32 H 0.08 0.65 7.63 -51.93 -0.40 0.25 16 33 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 0.64 8.03 -51.93 -0.42 0.23 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.39 5.95 3.98 -40.82 -0.16 5.78 16 39 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.02 0.35 7.16 -51.93 -0.37 -0.02 16 42 H 0.05 1.19 4.22 -51.93 -0.22 0.97 16 43 H 0.05 0.94 8.10 -51.93 -0.42 0.52 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.04 0.89 2.31 -51.93 -0.12 0.77 16 46 H 0.03 0.50 6.86 -51.93 -0.36 0.14 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 350.91 15.07 5.29 5.29 Total: -1.00 -30.47 350.91 -7.94 -38.41 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -8.20 Total: 6.66 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.26 Total: -8.19 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.04 Total: -47.56 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -3.88 Total: 17.14 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.47 -7.94 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895302455.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.891 kcal (2) G-P(sol) polarization free energy of solvation -30.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds