Wall clock time and date at job start Tue Mar 31 2020 06:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47331 * 2 1 4 4 N 1.46501 * 109.46809 * 120.00205 * 2 1 3 5 5 C 1.46498 * 119.99963 * 123.56109 * 4 2 1 6 6 C 1.50704 * 109.47054 * 269.99871 * 5 4 2 7 7 H 1.08000 * 119.99475 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00195 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00209 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47090 * 59.99807 * 10 8 6 12 12 H 1.48498 * 109.47050 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46987 * 299.99632 * 10 8 6 14 14 C 1.34768 * 119.99929 * 303.55444 * 4 2 1 15 15 O 1.21277 * 120.00269 * 8.06278 * 14 4 2 16 16 C 1.50709 * 120.00015 * 188.06202 * 14 4 2 17 17 H 1.08994 * 112.74217 * 280.91655 * 16 14 4 18 18 C 1.53508 * 113.52716 * 51.73981 * 16 14 4 19 19 C 1.53516 * 83.57596 * 88.75358 * 18 16 14 20 20 N 1.47478 * 113.47423 * 150.15000 * 16 14 4 21 21 C 1.46896 * 111.00512 * 23.87654 * 20 16 14 22 22 C 1.52999 * 109.46945 * 41.83107 * 21 20 16 23 23 C 1.52997 * 109.47282 * 161.83716 * 21 20 16 24 24 C 1.53008 * 109.46995 * 281.83711 * 21 20 16 25 25 H 1.09005 * 109.47231 * 305.63706 * 1 2 3 26 26 H 1.09011 * 109.47014 * 65.62835 * 1 2 3 27 27 H 1.08997 * 109.47660 * 185.63273 * 1 2 3 28 28 H 1.09005 * 109.47148 * 239.99678 * 2 1 3 29 29 H 1.09004 * 109.47027 * 184.88898 * 3 2 1 30 30 H 1.09000 * 109.47357 * 304.88966 * 3 2 1 31 31 H 1.08996 * 109.47014 * 64.89699 * 3 2 1 32 32 H 1.09003 * 109.47321 * 29.99437 * 5 4 2 33 33 H 1.08995 * 109.47456 * 149.99665 * 5 4 2 34 34 H 0.97009 * 119.99798 * 179.97438 * 9 8 6 35 35 H 1.09008 * 114.17028 * 202.39740 * 18 16 14 36 36 H 1.08995 * 114.17207 * 334.91440 * 18 16 14 37 37 H 1.09003 * 113.47391 * 271.25381 * 19 18 16 38 38 H 1.08998 * 113.47738 * 140.78913 * 19 18 16 39 39 H 1.09004 * 109.46843 * 87.55858 * 22 21 20 40 40 H 1.08999 * 109.47558 * 207.55222 * 22 21 20 41 41 H 1.08993 * 109.47813 * 327.55747 * 22 21 20 42 42 H 1.09002 * 109.47333 * 60.00337 * 23 21 20 43 43 H 1.09004 * 109.47245 * 179.97438 * 23 21 20 44 44 H 1.08999 * 109.47093 * 299.99436 * 23 21 20 45 45 H 1.08998 * 109.47154 * 28.15213 * 24 21 20 46 46 H 1.09000 * 109.47206 * 148.15195 * 24 21 20 47 47 H 1.08997 * 109.46775 * 268.14798 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.9236 -1.8347 1.0632 6 6 2.1178 -3.1045 0.9666 7 1 1.0391 -3.0634 1.0012 8 6 2.7575 -4.3187 0.8350 9 7 4.0711 -4.3687 0.7933 10 14 1.7587 -5.8927 0.7159 11 1 0.8688 -5.8257 -0.4709 12 1 2.6765 -7.0524 0.5822 13 1 0.9369 -6.0514 1.9426 14 6 1.6346 -0.2735 2.4189 15 8 0.7751 0.5751 2.5281 16 6 2.2736 -0.8617 3.6506 17 1 1.8696 -1.8406 3.9083 18 6 3.8079 -0.8208 3.6239 19 6 3.6105 0.5602 4.2646 20 7 2.3217 0.0727 4.7906 21 6 1.2811 1.1027 4.6715 22 6 -0.0215 0.4585 4.1929 23 6 1.0547 1.7590 6.0349 24 6 1.7263 2.1633 3.6625 25 1 -0.3634 0.5988 0.8352 26 1 -0.3633 0.4241 -0.9362 27 1 -0.3634 -1.0226 0.1009 28 1 1.8933 -0.5139 -0.8900 29 1 3.1265 1.4436 -0.0876 30 1 1.6069 1.9810 -0.8429 31 1 1.7501 1.9303 0.9306 32 1 3.5269 -1.7179 0.1628 33 1 3.5768 -1.8843 1.9343 34 1 4.5212 -5.2231 0.7011 35 1 4.2852 -1.5516 4.2768 36 1 4.2363 -0.7942 2.6220 37 1 3.5060 1.3653 3.5373 38 1 4.3395 0.7861 5.0427 39 1 -0.5872 0.1003 5.0531 40 1 -0.6135 1.1956 3.6503 41 1 0.2078 -0.3792 3.5344 42 1 1.9828 2.2180 6.3758 43 1 0.2829 2.5236 5.9464 44 1 0.7375 1.0035 6.7537 45 1 2.3972 1.7110 2.9322 46 1 0.8528 2.5681 3.1516 47 1 2.2462 2.9662 4.1851 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900469702.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:17 Heat of formation + Delta-G solvation = 134.734249 kcal Electronic energy + Delta-G solvation = -25634.187706 eV Core-core repulsion = 22438.196107 eV Total energy + Delta-G solvation = -3195.991600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.28526 -38.13256 -36.43804 -34.16554 -33.13854 -31.39403 -28.19886 -27.38719 -26.93059 -26.86872 -26.48281 -25.24879 -23.01647 -21.78169 -20.52244 -19.45957 -17.16741 -16.78706 -16.25053 -15.90543 -15.76644 -15.48320 -14.83445 -14.39960 -14.12501 -13.78056 -13.19188 -13.12998 -12.95505 -12.56235 -12.31454 -12.15527 -11.84311 -11.81083 -11.68037 -11.43151 -11.13285 -10.99056 -10.95616 -10.89560 -10.80372 -10.49406 -10.43036 -10.38217 -10.13658 -10.08227 -9.93068 -9.78392 -9.48723 -8.56503 -8.48703 -7.86589 -7.19828 -6.17792 -4.24764 3.18194 3.24038 3.29115 3.33077 3.81953 4.33030 4.33404 4.86949 5.11203 5.16231 5.24904 5.33061 5.42674 5.49952 5.57042 5.62724 5.76494 5.79011 5.88919 5.92894 5.99356 6.02696 6.09852 6.13055 6.20400 6.26728 6.28589 6.34147 6.34933 6.37078 6.49069 6.53256 6.63967 6.66001 6.76003 6.80614 6.84609 6.91375 7.12493 7.20314 7.50515 7.56455 7.76603 8.06600 8.33921 8.76765 8.94936 9.42332 10.87979 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018296 B = 0.006831 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.031690 B = 4097.787537 C = 4623.244933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 C -0.165 4.165 4 N -0.579 5.579 5 C 0.214 3.786 6 C -0.536 4.536 7 H 0.058 0.942 8 C 0.066 3.934 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.481 3.519 15 O -0.519 6.519 16 C 0.022 3.978 17 H 0.120 0.880 18 C -0.135 4.135 19 C -0.035 4.035 20 N -0.447 5.447 21 C 0.075 3.925 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.145 4.145 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.078 0.922 39 H -0.018 1.018 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.045 0.955 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.574 10.208 3.076 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.043 3.957 3 C -0.223 4.223 4 N -0.310 5.310 5 C 0.094 3.906 6 C -0.574 4.574 7 H 0.076 0.924 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.203 1.203 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.271 3.729 15 O -0.402 6.402 16 C -0.090 4.090 17 H 0.138 0.862 18 C -0.173 4.173 19 C -0.164 4.164 20 N -0.170 5.170 21 C -0.014 4.014 22 C -0.148 4.148 23 C -0.183 4.183 24 C -0.202 4.202 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.000 1.000 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.922 10.275 3.798 11.122 hybrid contribution -0.516 -0.802 -0.995 1.378 sum -2.438 9.473 2.804 10.175 Atomic orbital electron populations 1.22259 0.95507 1.02617 1.01954 1.20834 0.94326 0.92023 0.88480 1.22212 1.00586 0.96960 1.02511 1.48352 1.46894 1.31777 1.03961 1.19999 0.89165 0.81922 0.99469 1.21443 0.93509 0.91057 1.51415 0.92355 1.24902 0.94899 0.99043 0.94833 1.69900 1.07291 1.26304 1.49482 0.86613 0.79928 0.82471 0.78814 1.20254 1.21142 1.20094 1.20297 0.82769 0.84292 0.85546 1.90998 1.31048 1.34416 1.83741 1.22843 0.97679 0.99297 0.89217 0.86247 1.23396 0.94412 0.96930 1.02555 1.24535 0.93586 0.98494 0.99773 1.69315 1.02190 1.11185 1.34291 1.21515 0.94056 0.91848 0.94020 1.22643 0.93466 1.03337 0.95331 1.21743 1.00333 0.99644 0.96567 1.22769 1.01448 0.97192 0.98819 0.90171 0.93479 0.92656 0.89995 0.93142 0.92548 0.91369 0.95058 0.91773 0.92502 0.88595 0.88545 0.88888 0.90400 0.99990 0.92797 0.88828 0.93608 0.93126 0.92653 0.91144 0.91698 0.95699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 8.91 37.16 0.33 -2.42 16 2 C 0.15 2.54 3.27 -67.93 -0.22 2.32 16 3 C -0.16 -2.43 9.24 37.16 0.34 -2.09 16 4 N -0.58 -11.08 2.39 -167.49 -0.40 -11.48 16 5 C 0.21 4.77 4.48 -5.19 -0.02 4.74 16 6 C -0.54 -13.52 9.39 -34.44 -0.32 -13.85 16 7 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 10 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.48 8.82 3.86 -10.98 -0.04 8.78 16 15 O -0.52 -9.24 3.30 5.56 0.02 -9.22 16 16 C 0.02 0.39 2.93 -72.58 -0.21 0.18 16 17 H 0.12 2.36 8.14 -51.93 -0.42 1.94 16 18 C -0.14 -2.24 6.63 -26.20 -0.17 -2.42 16 19 C -0.04 -0.54 7.12 -7.54 -0.05 -0.59 16 20 N -0.45 -7.47 6.25 -222.22 -1.39 -8.85 16 21 C 0.08 1.21 0.89 -131.60 -0.12 1.09 16 22 C -0.09 -1.61 7.21 37.16 0.27 -1.34 16 23 C -0.12 -1.79 8.47 37.16 0.31 -1.48 16 24 C -0.15 -2.22 5.84 37.16 0.22 -2.00 16 25 H 0.08 1.39 5.93 -51.93 -0.31 1.08 16 26 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.08 1.46 7.82 -51.93 -0.41 1.05 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.06 5.42 -51.93 -0.28 0.78 16 32 H 0.03 0.75 7.95 -51.93 -0.41 0.33 16 33 H 0.06 1.43 3.70 -51.93 -0.19 1.24 16 34 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 36 H 0.10 1.69 5.63 -51.93 -0.29 1.39 16 37 H 0.09 1.41 4.33 -51.93 -0.22 1.18 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H -0.02 -0.32 7.85 -51.93 -0.41 -0.72 16 40 H 0.05 0.94 6.70 -51.93 -0.35 0.60 16 41 H 0.09 1.82 3.65 -58.53 -0.21 1.60 16 42 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 45 H 0.07 1.14 2.64 -51.93 -0.14 1.00 16 46 H 0.06 1.03 6.76 -51.93 -0.35 0.68 16 47 H 0.02 0.35 7.79 -51.93 -0.40 -0.06 16 LS Contribution 333.43 15.07 5.02 5.02 Total: -1.00 -25.33 333.43 -8.57 -33.90 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -7.75 Total: 5.86 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 0.21 Total: -7.46 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.05 Total: -43.53 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.02 Total: -9.22 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.33 -8.57 -33.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900469702.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.637 kcal (2) G-P(sol) polarization free energy of solvation -25.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds