Wall clock time and date at job start Tue Mar 31 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47359 * 2 1 4 4 N 1.46903 * 109.46940 * 180.02562 * 3 2 1 5 5 C 1.46839 * 110.99873 * 66.04688 * 4 3 2 6 6 C 1.53042 * 109.52295 * 185.83974 * 5 4 3 7 7 C 1.53130 * 109.27721 * 300.82159 * 6 5 4 8 8 C 1.53118 * 109.15971 * 57.65137 * 7 6 5 9 9 H 1.09007 * 109.50471 * 62.28662 * 8 7 6 10 10 C 1.50693 * 109.50396 * 182.40433 * 8 7 6 11 11 O 1.21285 * 119.99802 * 86.02504 * 10 8 7 12 12 N 1.34770 * 120.00246 * 266.02599 * 10 8 7 13 13 C 1.46509 * 120.00065 * 184.12610 * 12 10 8 14 14 C 1.53000 * 109.47002 * 85.04738 * 13 12 10 15 15 C 1.46500 * 120.00108 * 4.12208 * 12 10 8 16 16 C 1.50707 * 109.46861 * 84.39710 * 15 12 10 17 17 H 1.07997 * 119.99669 * 359.97438 * 16 15 12 18 18 C 1.37874 * 119.99891 * 180.02562 * 16 15 12 19 19 N 1.31515 * 119.99754 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00059 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47178 * 90.00594 * 20 18 16 22 22 H 1.48504 * 109.46888 * 210.00328 * 20 18 16 23 23 H 1.48498 * 109.47187 * 330.00448 * 20 18 16 24 24 C 1.46849 * 110.99608 * 190.25731 * 4 3 2 25 25 H 1.09001 * 109.46985 * 299.99988 * 1 2 3 26 26 H 1.09007 * 109.47199 * 59.99544 * 1 2 3 27 27 H 1.08996 * 109.47613 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46985 * 240.00012 * 2 1 3 29 29 H 1.08999 * 109.46931 * 120.00581 * 2 1 3 30 30 H 1.09001 * 109.47062 * 60.00060 * 3 2 1 31 31 H 1.08994 * 109.46926 * 299.99899 * 3 2 1 32 32 H 1.08996 * 109.46536 * 65.82726 * 5 4 3 33 33 H 1.08996 * 109.46730 * 305.85418 * 5 4 3 34 34 H 1.08995 * 109.50330 * 60.75893 * 6 5 4 35 35 H 1.08993 * 109.50421 * 180.84253 * 6 5 4 36 36 H 1.08996 * 109.52125 * 177.55737 * 7 6 5 37 37 H 1.08994 * 109.51977 * 297.68894 * 7 6 5 38 38 H 1.09001 * 109.46596 * 205.04193 * 13 12 10 39 39 H 1.09001 * 109.47014 * 325.04339 * 13 12 10 40 40 H 1.08999 * 109.46924 * 184.62262 * 14 13 12 41 41 H 1.09001 * 109.46983 * 304.61951 * 14 13 12 42 42 H 1.09002 * 109.47592 * 64.62148 * 14 13 12 43 43 H 1.09005 * 109.47361 * 204.39067 * 15 12 10 44 44 H 1.09002 * 109.47006 * 324.39732 * 15 12 10 45 45 H 0.97004 * 119.99870 * 179.97438 * 19 18 16 46 46 H 1.08995 * 109.46403 * 54.14446 * 24 4 3 47 47 H 1.08998 * 109.46260 * 294.17762 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4424 -0.0006 5 6 4.0347 0.8860 -1.2537 6 6 5.5576 0.7666 -1.1612 7 6 6.1585 2.1514 -0.9041 8 6 5.5584 2.7290 0.3807 9 1 5.8219 2.0909 1.2244 10 6 6.1002 4.1164 0.6097 11 8 5.5627 5.0708 0.0891 12 7 7.1820 4.2966 1.3930 13 6 7.6546 5.6514 1.6890 14 6 6.8798 6.2123 2.8832 15 6 7.8853 3.1378 1.9486 16 6 8.8698 2.6143 0.9348 17 1 8.9620 3.0963 -0.0272 18 6 9.6521 1.5193 1.2351 19 7 10.5109 1.0622 0.3502 20 14 9.4921 0.6852 2.8989 21 1 8.4636 -0.3830 2.8202 22 1 10.7972 0.0886 3.2810 23 1 9.0884 1.6870 3.9181 24 6 4.0354 2.7914 0.2435 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.7717 1.5440 -2.0819 33 1 3.6028 -0.1004 -1.4226 34 1 5.8211 0.0978 -0.3420 35 1 5.9489 0.3676 -2.0970 36 1 7.2395 2.0647 -0.7943 37 1 5.9290 2.8094 -1.7422 38 1 8.7177 5.6213 1.9275 39 1 7.4950 6.2898 0.8200 40 1 7.1727 7.2485 3.0520 41 1 5.8105 6.1661 2.6766 42 1 7.1040 5.6219 3.7716 43 1 8.4177 3.4348 2.8523 44 1 7.1642 2.3573 2.1916 45 1 11.0615 0.2921 0.5616 46 1 3.6040 3.1888 1.1621 47 1 3.7723 3.4405 -0.5916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906374899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:24 Heat of formation + Delta-G solvation = -50.612600 kcal Electronic energy + Delta-G solvation = -23874.281880 eV Core-core repulsion = 20670.253038 eV Total energy + Delta-G solvation = -3204.028842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.82103 -38.16267 -35.28252 -34.75175 -32.74974 -31.82322 -31.12915 -29.99902 -27.55627 -26.18260 -24.30338 -22.86571 -22.64268 -22.15936 -20.85398 -19.53233 -18.00827 -16.99950 -16.49289 -15.90439 -15.36893 -15.28238 -14.55737 -14.37639 -14.04517 -13.88908 -13.64158 -13.29836 -13.15854 -13.10426 -12.62407 -12.44173 -12.24374 -12.14577 -11.83399 -11.70530 -11.66634 -11.63443 -11.09568 -11.07543 -10.92015 -10.83157 -10.67583 -10.41198 -10.35202 -10.23801 -10.04785 -9.90379 -9.52227 -8.90267 -8.67967 -8.12004 -7.73479 -6.20832 -4.21381 3.19662 3.27044 3.29157 3.36738 3.73462 4.17713 4.28174 4.84904 4.98880 5.09437 5.12569 5.23105 5.30558 5.38409 5.42526 5.49017 5.56391 5.63561 5.67090 5.73050 5.74399 5.77969 5.81883 5.90105 5.95234 6.03415 6.10980 6.13958 6.19134 6.25131 6.26455 6.31268 6.37220 6.46042 6.53938 6.57205 6.73243 6.86964 7.06121 7.28389 7.29626 7.39677 7.45066 8.16534 8.41906 8.82738 8.97626 9.38909 10.91299 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.005816 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.963796 B = 4813.285427 C = 5875.191564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 N -0.539 5.539 5 C 0.053 3.947 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.095 4.095 9 H 0.101 0.899 10 C 0.527 3.473 11 O -0.574 6.574 12 N -0.590 5.590 13 C 0.114 3.886 14 C -0.163 4.163 15 C 0.206 3.794 16 C -0.537 4.537 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.890 5.890 20 Si 0.868 3.132 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.265 1.265 24 C 0.076 3.924 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.266 0.734 46 H 0.068 0.932 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 -0.449 1.343 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.071 4.071 4 N -0.263 5.263 5 C -0.074 4.074 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.116 4.116 9 H 0.119 0.881 10 C 0.315 3.685 11 O -0.455 6.455 12 N -0.320 5.320 13 C -0.009 4.009 14 C -0.222 4.222 15 C 0.085 3.915 16 C -0.575 4.575 17 H 0.098 0.902 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.695 3.305 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.052 4.052 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.565 -0.393 1.443 13.647 hybrid contribution -0.072 -0.077 0.258 0.279 sum -13.637 -0.470 1.701 13.751 Atomic orbital electron populations 1.21738 0.95922 1.01524 1.01638 1.21550 0.95012 0.96641 1.02754 1.22103 0.87540 0.96933 1.00565 1.61871 1.06691 1.22603 1.35128 1.22190 0.96410 0.99155 0.89668 1.21528 0.93184 0.98006 1.02141 1.21609 1.03697 0.95194 0.94599 1.21190 0.94234 0.94507 1.01685 0.88110 1.20388 0.79978 0.90600 0.77514 1.90576 1.60820 1.43408 1.50699 1.47966 1.28065 1.07376 1.48627 1.21256 0.98355 0.83781 0.97508 1.22125 1.01044 1.00270 0.98729 1.19872 0.92523 0.83852 0.95228 1.21339 1.20033 1.13969 1.02139 0.90246 1.24834 0.94602 0.96436 0.96594 1.69888 1.23477 1.24768 1.34567 0.86969 0.78074 0.80542 0.84944 1.19682 1.21008 1.18974 1.21850 0.94095 0.88377 1.00914 0.92755 0.93004 0.92702 0.91951 0.91097 0.91038 0.95200 0.95277 0.90933 0.90847 0.91518 0.87594 0.92970 0.90354 0.91064 0.92308 0.92728 0.92847 0.94875 0.95090 0.92398 0.91304 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.26 5.87 -26.73 -0.16 -1.42 16 3 C 0.06 0.69 4.96 -3.82 -0.02 0.67 16 4 N -0.54 -7.92 4.65 -234.68 -1.09 -9.02 16 5 C 0.05 0.76 5.29 -3.84 -0.02 0.74 16 6 C -0.11 -1.78 6.09 -26.64 -0.16 -1.94 16 7 C -0.11 -2.14 5.27 -26.60 -0.14 -2.28 16 8 C -0.09 -1.78 2.13 -91.69 -0.20 -1.98 16 9 H 0.10 1.97 5.84 -51.93 -0.30 1.66 16 10 C 0.53 11.00 6.60 -10.99 -0.07 10.93 16 11 O -0.57 -13.00 15.87 5.55 0.09 -12.91 16 12 N -0.59 -12.20 2.48 -175.05 -0.43 -12.63 16 13 C 0.11 2.08 6.09 -4.04 -0.02 2.05 16 14 C -0.16 -2.49 10.20 37.16 0.38 -2.12 16 15 C 0.21 4.53 4.00 -5.19 -0.02 4.51 16 16 C -0.54 -13.71 8.13 -34.44 -0.28 -13.99 16 17 H 0.08 2.28 7.68 -52.49 -0.40 1.88 16 18 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -25.21 13.96 55.43 0.77 -24.43 16 20 Si 0.87 19.63 27.47 -169.99 -4.67 14.96 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.27 -5.71 6.54 56.52 0.37 -5.34 16 24 C 0.08 1.26 4.40 -3.83 -0.02 1.24 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.84 7.98 -51.93 -0.41 0.43 16 31 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 32 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.91 6.22 -51.93 -0.32 0.58 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 2.35 5.82 -51.93 -0.30 2.04 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.38 8.03 -51.93 -0.42 0.96 16 39 H 0.07 1.33 7.52 -51.93 -0.39 0.94 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.72 7.09 -51.93 -0.37 0.35 16 44 H 0.03 0.67 5.34 -51.93 -0.28 0.39 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 46 H 0.07 1.11 8.01 -51.93 -0.42 0.69 16 47 H 0.04 0.75 7.83 -51.93 -0.41 0.34 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -28.46 359.41 -8.97 -37.43 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -8.60 Total: 3.69 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.46 Total: -2.52 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.75 Total: -46.08 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.09 Total: -12.91 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.67 Total: 14.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.46 -8.97 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906374899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.178 kcal (2) G-P(sol) polarization free energy of solvation -28.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds